Ss1.1-Thy1-THY010096C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCTATCGGAGAATCATGTCTGTGAAAAGGCCAGATGTCCCGAAAGCAAGGCTGTGGAT TGAATTTGAATCGGAGAAAGGTCTGGACTACGGGGGCGTGGCCAGAGAATGGTTCTTCTT ACTGTCCAAAGAGATGTTCAACCCCTACTATGGTCTCTTCGAGTATTCCGCAACGGACAA CTATACGCTTCAGATCAATCCCAATTCGGGCCTCTGTAATGAAGATCATTTGTCCTATTT CACTTTTATTGGAAGAGTTGCTGGCCTGGCAGTATTTCATGGGAAACTTTTAGATGGTTT CTTCATTAGACCATTTTACAAAATGATGCTGGGAAAGCAGATAACTCTGAATGACATGGA ATCTGTGGATAGTGAATATTACAACTCTTTGAAATGGATCTTAGAAAATGATCCGACTGA ATTGGATCTTATGTTCTGCATCGATGAAGAAAACTTTGGGCAGACATATCAAGTGGATCT GAAGCCCAATGGGTCAGAAATAATGGTAACAAATGAAAACAAAAGGGAGTATATTGACCT CGTCATCCAGTGGAGATTTGTGAACAGGGTCCAGAAGCAAATGAACGCCTTCCTGGAGGG ATTCACGGAACTGCTTCCTATTGATTTGATTAAAATTTTTGACGAAAATGAGCTGGAGTT GCTGATGTGCGGCCTTGGTGATGTGGATGTGAACGACTGGCGACAACATTCTATTTACAA GAATGGCTACTGCCCAAACCACCCTGTGATTCAGTGGTTCTGGAAGGCTGTGCTGCTGAT GGACGCCGAGAAGCGGATCCGGTTACTGCAGTTCGTCACCGGGACGTCCCGAGTACCTAT GAATGGATTTGCCGAGCTTTATGGTTCCAATGGTCCTCAGCTGTTTACAATAGAGCAATG GGGAAGTCCTGAGAAACTGCCCAGAGCTCACACATGCTTTAATCGCCTTGACTTACCTCC ATACGAAACGTTCGAGGATTTACGAGAGAAGCTTCTCATGGCTGTGGAAAATGCCCAAGG ATTCGAGGGGGTGGATTAGGCACCCCTCGCCTCGGAGTGGTTGTTCTTCGAGCAAGTCCT GCTTGCACTTTTGCATTTGCCTAACAGACTCTGCAGAGACCGTGGCAGAGAGCGGTGTGC GGCGTGGGCTCCTGGAGCTGAGCCTTCGCCTGCGACTTGCCCACGTTCTGACACGGGAAC CCAGTCCCAGGTCGCGTTCCTGCATCTTCCACCACAAGTTACCAACTGGTTGATGTGTAT ACTAATTACATTTCAGGAGGACTTATTCTATTTATGTTGTGCCTCTGTAGGCCAAGCCCT TAATAAATATTTTACATACTTTATAATGACAGCGAATGGAATTAATCACTCTCCAGGTAT AGTATTACAACTCATGTTTACTTCTTAAAATGATTTAGACCGATTTGCAGATTTTATTTC AGTACAATTAAAGATGTCTCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCTATCGGAGAATCATGTCTGTGAAAAGGCCAGATGTCCCGAAAGCAAGGCTGTGGAT TGAATTTGAATCGGAGAAAGGTCTGGACTACGGGGGCGTGGCCAGAGAATGGTTCTTCTT ACTGTCCAAAGAGATGTTCAACCCCTACTATGGTCTCTTCGAGTATTCCGCAACGGACAA CTATACGCTTCAGATCAATCCCAATTCGGGCCTCTGTAATGAAGATCATTTGTCCTATTT CACTTTTATTGGAAGAGTTGCTGGCCTGGCAGTATTTCATGGGAAACTTTTAGATGGTTT CTTCATTAGACCATTTTACAAAATGATGCTGGGAAAGCAGATAACTCTGAATGACATGGA ATCTGTGGATAGTGAATATTACAACTCTTTGAAATGGATCTTAGAAAATGATCCGACTGA ATTGGATCTTATGTTCTGCATCGATGAAGAAAACTTTGGGCAGACATATCAAGTGGATCT GAAGCCCAATGGGTCAGAAATAATGGTAACAAATGAAAACAAAAGGGAGTATATTGACCT CGTCATCCAGTGGAGATTTGTGAACAGGGTCCAGAAGCAAATGAACGCCTTCCTGGAGGG ATTCACGGAACTGCTTCCTATTGATTTGATTAAAATTTTTGACGAAAATGAGCTGGAGTT GCTGATGTGCGGCCTTGGTGATGTGGATGTGAACGACTGGCGACAACATTCTATTTACAA GAATGGCTACTGCCCAAACCACCCTGTGATTCAGTGGTTCTGGAAGGCTGTGCTGCTGAT GGACGCCGAGAAGCGGATCCGGTTACTGCAGTTCGTCACCGGGACGTCCCGAGTACCTAT GAATGGATTTGCCGAGCTTTATGGTTCCAATGGTCCTCAGCTGTTTACAATAGAGCAATG GGGAAGTCCTGAGAAACTGCCCAGAGCTCACACATGCTTTAATCGCCTTGACTTACCTCC ATACGAAACGTTCGAGGATTTACGAGAGAAGCTTCTCATGGCTGTGGAAAATGCCCAAGG ATTCGAGGGGGTGGATTAGGCACCCCTCGCCTCGGAGTGGTTGTTCTTCGAGCAAGTCCT GCTTGCACTTTTGCATTTGCCTAACAGACTCTGCAGAGACCGTGGCAGAGAGCGGTGTGC GGCGTGGGCTCCTGGAGCTGAGCCTTCGCCTGCGACTTGCCCACGTTCTGACACGGGAAC CCAGTCCCAGGTCGCGTTCCTGCATCTTCCACCACAAGTTACCAACTGGTTGATGTGTAT ACTAATTACATTTCAGGAGGACTTATTCTATTTATGTTGTGCCTCTGTAGGCCAAGCCCT TAATAAATATTTTACATACTTTATAATGACAGCGAATGGAATTAATCACTCTCCAGGTAT AGTATTACAACTCATGTTTACTTCTTAAAATGATTTAGACCGATTTGCAGATTTTATTTC AGTACAATTAAAGATGTCTCATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 2-175, gnl|bosTau2|chr10 (39213572-39213399) | |
| 2-175, gnl|canFam2|chr30 (24126305-24126569) | |
| 2-175, gnl|danRer3|chr13 (5108238-5108496) | |
| 2-175, gnl|dasNov1|scaffold_51038 (6164-5900) | |
| 2-175, gnl|echTel1|scaffold_321328 (42313-42050) | |
| 2-175, gnl|fr1|chrUn (230777827-230777562) | |
| 2-175, gnl|galGal2|chr10 (8291400-8291136) | |
| 2-175, gnl|hg17|chr15 (53921411-53921673) | |
| 2-175, gnl|Hg17|chr15 (53921596-53921423) | |
| 2-175, gnl|loxAfr1|scaffold_30134 (3533-3795) | |
| 2-175, gnl|mm7|chr9 (72767871-72767612) | |
| 2-175, gnl|Mm7|chr9 (72767688-72767861) | |
| 2-175, gnl|monDom2|scaffold_12 (33446132-33446391) | |
| 2-175, gnl|oryCun1|scaffold_199389 (42416-42153) | |
| 2-175, gnl|panTro1|chr16 (54267676-54267938) | |
| 2-175, gnl|rheMac2|chr7 (34162532-34162794) | |
| 2-175, gnl|rn3|chr8 (77343010-77342747) | |
| 2-175, gnl|tetNig1|chr5 (5291833-5292074) | |
| 2-175, gnl|xenTro1|scaffold_685 (143872-144117) | |
| 1103-1346, gnl|bosTau2|chr20 (29086362-29086124) | |
| 1103-1346, gnl|Hg17|chr18 (54214546-54214780) | |
| 1103-1346, gnl|Mm7|chr18 (65601823-65602052) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-175, gnl|bosTau2|chr10 (39213572-39213399) | |
| 2-175, gnl|canFam2|chr30 (24126305-24126569) | |
| 2-175, gnl|danRer3|chr13 (5108238-5108496) | |
| 2-175, gnl|dasNov1|scaffold_51038 (6164-5900) | |
| 2-175, gnl|echTel1|scaffold_321328 (42313-42050) | |
| 2-175, gnl|fr1|chrUn (230777827-230777562) | |
| 2-175, gnl|galGal2|chr10 (8291400-8291136) | |
| 2-175, gnl|hg17|chr15 (53921411-53921673) | |
| 2-175, gnl|Hg17|chr15 (53921596-53921423) | |
| 2-175, gnl|loxAfr1|scaffold_30134 (3533-3795) | |
| 2-175, gnl|mm7|chr9 (72767871-72767612) | |
| 2-175, gnl|Mm7|chr9 (72767688-72767861) | |
| 2-175, gnl|monDom2|scaffold_12 (33446132-33446391) | |
| 2-175, gnl|oryCun1|scaffold_199389 (42416-42153) | |
| 2-175, gnl|panTro1|chr16 (54267676-54267938) | |
| 2-175, gnl|rheMac2|chr7 (34162532-34162794) | |
| 2-175, gnl|rn3|chr8 (77343010-77342747) | |
| 2-175, gnl|tetNig1|chr5 (5291833-5292074) | |
| 2-175, gnl|xenTro1|scaffold_685 (143872-144117) | |
| 1103-1346, gnl|bosTau2|chr20 (29086362-29086124) | |
| 1103-1346, gnl|Hg17|chr18 (54214546-54214780) | |
| 1103-1346, gnl|Mm7|chr18 (65601823-65602052) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pro (0.512033) | |
| fce (0.271592) | |
| tes (0.207814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| fce (0.271592) | |
| tes (0.207814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |