Ss1.1-Thy1-THY010096C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAAGGCCTCGTGTTGAGGACAAGGCTGACACGCCCAGAGCTGTTTTTCAAGTGTTTGC TGTTTGGTATATGGGCTGGTTGAGTTGAAACAACAAAACAAAAAAATGCAGCAACTGACT GGATGACCCTAAATGGCCGAAATTGCTACCTGCCTCTAGAACGAGATGACTTGATGTCTG CACTAGTTTCTGTAAGGAGCAGCTTGACGGACGTGCAGCAAAGAGAAGCGAGTGCTTTTG AGCAGGTGAAACAAGCTGTGCAAATGACCGAGGAAGCCAATTTTGAAAAAACCAAGGCTT TAATCCAGTGCGAACAGTTGAAGAATGAACTAGAGAGGCAGACAGAACGACTTGAGAAAG AACTTGCATCTCAGCAAGAAAAAAGGACCTTTGAGAAAGAGATGATGAAAAAAGAAATGA CAAAAGAAAGAGAGGACATGAGATCAAAGGTGTTGACCCTATCTCAGAATATTGCCCAAC TGGAGACCCAGGTGGAAAAGGCTACAAGAGAGAAAATTTCAGCTGTTAATCAACTAGAAG AAATTCAAAACCAGCTTGCTTCCCAGGAAATGGATGTCACAAAGGTGTGTGGAGAAATGC GCTATCAACTGAATAAAATCAAAATGGAAAAGGATGATGCAGAAAAGGAGCACAGAGAGT ACAGAACAAAAACAAAAAGGGATCTTGAAATTAAAGATCAGGAAATCGAGAAATTGAGAT TAGAAGTGAGTGAAAGCAAGCAGCGCTTGGAACAGGAGCAGCAGAAGGCAACCCAGGCCA GGGAGGAGTGCCTGAAACTGACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCA CCAGACTGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAACGAAGCAAAGGCCCAAGCCC TTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAAGCCCAGC ATGACAAAACTGAAAGTGAACAATATTCCTTGCTGACCTCCCAGAATACATTTTTGATCA AGTTAAAGGAAGAGTGCTGTACATACCAGCTTCTGCAGGAAAGACAGAGCCTGTCGGAAG GATCTGAAATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAAGGCCTCGTGTTGAGGACAAGGCTGACACGCCCAGAGCTGTTTTTCAAGTGTTTGC TGTTTGGTATATGGGCTGGTTGAGTTGAAACAACAAAACAAAAAAATGCAGCAACTGACT GGATGACCCTAAATGGCCGAAATTGCTACCTGCCTCTAGAACGAGATGACTTGATGTCTG CACTAGTTTCTGTAAGGAGCAGCTTGACGGACGTGCAGCAAAGAGAAGCGAGTGCTTTTG AGCAGGTGAAACAAGCTGTGCAAATGACCGAGGAAGCCAATTTTGAAAAAACCAAGGCTT TAATCCAGTGCGAACAGTTGAAGAATGAACTAGAGAGGCAGACAGAACGACTTGAGAAAG AACTTGCATCTCAGCAAGAAAAAAGGACCTTTGAGAAAGAGATGATGAAAAAAGAAATGA CAAAAGAAAGAGAGGACATGAGATCAAAGGTGTTGACCCTATCTCAGAATATTGCCCAAC TGGAGACCCAGGTGGAAAAGGCTACAAGAGAGAAAATTTCAGCTGTTAATCAACTAGAAG AAATTCAAAACCAGCTTGCTTCCCAGGAAATGGATGTCACAAAGGTGTGTGGAGAAATGC GCTATCAACTGAATAAAATCAAAATGGAAAAGGATGATGCAGAAAAGGAGCACAGAGAGT ACAGAACAAAAACAAAAAGGGATCTTGAAATTAAAGATCAGGAAATCGAGAAATTGAGAT TAGAAGTGAGTGAAAGCAAGCAGCGCTTGGAACAGGAGCAGCAGAAGGCAACCCAGGCCA GGGAGGAGTGCCTGAAACTGACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCA CCAGACTGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAACGAAGCAAAGGCCCAAGCCC TTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAAGCCCAGC ATGACAAAACTGAAAGTGAACAATATTCCTTGCTGACCTCCCAGAATACATTTTTGATCA AGTTAAAGGAAGAGTGCTGTACATACCAGCTTCTGCAGGAAAGACAGAGCCTGTCGGAAG GATCTGAAATAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 7-124, gnl|bosTau2|chr16 (23752533-23752651) | |
| 295-451, gnl|bosTau2|chr16 (23765298-23765454) | |
| 295-451, gnl|canFam2|chr7 (37434544-37434727) | |
| 295-451, gnl|dasNov1|scaffold_39545 (9654-9481) | |
| 295-451, gnl|echTel1|scaffold_325382 (266921-266737) | |
| 295-451, gnl|galGal2|chr3 (31487269-31487092) | |
| 295-451, gnl|hg17|chr1 (239819857-239820041) | |
| 295-451, gnl|Hg17|chr1 (239819881-239820037) | |
| 295-451, gnl|loxAfr1|scaffold_597 (142672-142488) | |
| 295-451, gnl|mm7|chr1 (176834473-176834653) | |
| 295-451, gnl|Mm7|chr1_random (10288163-10288007) | |
| 295-451, gnl|monDom2|scaffold_13 (40530827-40530647) | |
| 295-451, gnl|oryCun1|scaffold_41012 (1096-916) | |
| 295-451, gnl|panTro1|chr1 (223812336-223812520) | |
| 295-451, gnl|rheMac2|chr1 (213778971-213778787) | |
| 295-451, gnl|rn3|chr13 (92844843-92845023) | |
| 583-705, gnl|bosTau2|chr16 (18967065-18966943) | |
| 583-705, gnl|canFam2|chr7 (37449056-37449382) | |
| 583-705, gnl|dasNov1|scaffold_7414 (13887-13545) | |
| 583-705, gnl|echTel1|scaffold_325382 (254402-254079) | |
| 583-705, gnl|galGal2|chr3 (31480755-31480428) | |
| 583-705, gnl|hg17|chr1 (239833401-239833746) | |
| 583-705, gnl|Hg17|chr1 (239833556-239833678) | |
| 583-705, gnl|loxAfr1|scaffold_597 (125950-125615) | |
| 583-705, gnl|mm7|chr1 (176844141-176844458) | |
| 583-705, gnl|Mm7|chr1 (176844271-176844393) | |
| 583-705, gnl|monDom2|scaffold_13 (40520398-40520017) | |
| 583-705, gnl|panTro1|chr1 (223826420-223826765) | |
| 583-705, gnl|rheMac2|chr1 (213765704-213765360) | |
| 583-705, gnl|rn3|chr13 (92854039-92854358) | |
| 583-705, gnl|xenTro1|scaffold_556 (451305-451035) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-124, gnl|bosTau2|chr16 (23752533-23752651) | |
| 295-451, gnl|bosTau2|chr16 (23765298-23765454) | |
| 295-451, gnl|canFam2|chr7 (37434544-37434727) | |
| 295-451, gnl|dasNov1|scaffold_39545 (9654-9481) | |
| 295-451, gnl|echTel1|scaffold_325382 (266921-266737) | |
| 295-451, gnl|galGal2|chr3 (31487269-31487092) | |
| 295-451, gnl|hg17|chr1 (239819857-239820041) | |
| 295-451, gnl|Hg17|chr1 (239819881-239820037) | |
| 295-451, gnl|loxAfr1|scaffold_597 (142672-142488) | |
| 295-451, gnl|mm7|chr1 (176834473-176834653) | |
| 295-451, gnl|Mm7|chr1_random (10288163-10288007) | |
| 295-451, gnl|monDom2|scaffold_13 (40530827-40530647) | |
| 295-451, gnl|oryCun1|scaffold_41012 (1096-916) | |
| 295-451, gnl|panTro1|chr1 (223812336-223812520) | |
| 295-451, gnl|rheMac2|chr1 (213778971-213778787) | |
| 295-451, gnl|rn3|chr13 (92844843-92845023) | |
| 583-705, gnl|bosTau2|chr16 (18967065-18966943) | |
| 583-705, gnl|canFam2|chr7 (37449056-37449382) | |
| 583-705, gnl|dasNov1|scaffold_7414 (13887-13545) | |
| 583-705, gnl|echTel1|scaffold_325382 (254402-254079) | |
| 583-705, gnl|galGal2|chr3 (31480755-31480428) | |
| 583-705, gnl|hg17|chr1 (239833401-239833746) | |
| 583-705, gnl|Hg17|chr1 (239833556-239833678) | |
| 583-705, gnl|loxAfr1|scaffold_597 (125950-125615) | |
| 583-705, gnl|mm7|chr1 (176844141-176844458) | |
| 583-705, gnl|Mm7|chr1 (176844271-176844393) | |
| 583-705, gnl|monDom2|scaffold_13 (40520398-40520017) | |
| 583-705, gnl|panTro1|chr1 (223826420-223826765) | |
| 583-705, gnl|rheMac2|chr1 (213765704-213765360) | |
| 583-705, gnl|rn3|chr13 (92854039-92854358) | |
| 583-705, gnl|xenTro1|scaffold_556 (451305-451035) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cte (1.17096) | |
| tes (0.207814) | |
| sin (0.174948) | |
| spl (0.143184) | |
| ese (0.126502) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| tes (0.207814) | |
| sin (0.174948) | |
| spl (0.143184) | |
| ese (0.126502) |