Non-Coding RNA Search

Ss1.1-Thy1-THY010096G11.5

Sequence:


               
               ATTGCTCTCTCTCCCCTGCGATGGCATCCGGGCTGGTGAGGCTGCTGCAGTGGGGACCTC
GCCGCCTCCTGGCACCGGCCGCCCCGACTCTCGCCCCGCCAGTTCGGGGAGCAAAGAAGG
GCTTCCGCGCCGCCTACCGCTTCCAGAAGGAGTTGGAGCGGTGGCGCCTCCTCAGGTGCC
CTCCGCCGCCCGTGCGCCGTTCAGAGAAGCCCAACTGGGATTACCATGCTGAAATACAAG
CATTTGGCCATCGGTTACAGGAAACCTTTTCCCTAGATCTTCTCAAAACTGCATTTGTTA
ATAGCTGCTATATTAAAAGTGAGGAGGCCAAACGCCAAAAACTTGGAATAGACAAAGAAG
CTGCTCTTCTGAACCTTAAAGATAATCAAGAACTATCTGAACAAGGGATATCTTTTTCAC
AAACTTGCCTCACACAATTTTTTGAGGACGCCTTCCCAGACTTGCCCACTGAAGGCGTTA
CAAGTCTAGTTGACTTTCTCACCAGTGAGGAAGTTGTGTGTCATGTGGCTAGAAACCTGG
CTGTGGAGCAGTTAGCGCTGAGTGCAGAGTTTCCTGTTCCCCCGCCTGTGTTAAGGCAGA
CTTTCTTTGCAGTGATTGGAGCCCTGTTACAGAGCAGTGGACCAGAGAGGACTGCACTTT
TCATCAGGGACTTCTTAATTACGCAAATGACTGGAAAAGAACTCTTTGAGATGTGGACGA
TAACAAATCCCATGGGGTTACTGGTAGAAGAACTGAAGAAAAGGAAGATTTCAGCTCCCG
AATCTAGACTTACTAGGCAGTCTGGAAGCACCACAGCTCTCCCTGTATATTTTGTTGGCT
TATACTGTGATAGAAAGTTGATTGCGGAAGGTCCTGGGGAGACAGTGCTGGTTGCGGAAG
AAGAAGCTGCCCGAGTGGCCCTTAGGAAACTCTTTGGGTTCACCGAGAATCGCCGGCCCT
GGGACTATTCCAAGCCCAAAGAGCATGTCAGAGCAGAAAAGACCATCACTGCCAGCTAGC
CAGCCAAAGAGATGGCAGCCTGAAATTATGAGCAAAATGGTGAGACAGACGTCAGAGATG
TTCAAAGTTGGACATTTTTCAAATTGTAAAGAAATGTGTCTCATTCCTCATACTGAGTTC
CTAAAATTAAGTATTTATCAGGTCACTTCTTTTTCTTTTTCATTTTTTTTTTGTCAAAAG
TCTTTTTTTGATAGTTTTCAATAAATTTTAACTAAAGTCCTTGATTTTATTATTGTATTT
AACTTGTACAGTTAGGTGTATTTTATTCCCTTCTAGCTTTAGGTATCATAACTTGAATAT
ATGTTTTACGTGAACTTTGCTATATTACCAATAAAAAGTTATTCTTTAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCTCTCTCTCCCCTGCGATGGCATCCGGGCTGGTGAGGCTGCTGCAGTGGGGACCTC
GCCGCCTCCTGGCACCGGCCGCCCCGACTCTCGCCCCGCCAGTTCGGGGAGCAAAGAAGG
GCTTCCGCGCCGCCTACCGCTTCCAGAAGGAGTTGGAGCGGTGGCGCCTCCTCAGGTGCC
CTCCGCCGCCCGTGCGCCGTTCAGAGAAGCCCAACTGGGATTACCATGCTGAAATACAAG
CATTTGGCCATCGGTTACAGGAAACCTTTTCCCTAGATCTTCTCAAAACTGCATTTGTTA
ATAGCTGCTATATTAAAAGTGAGGAGGCCAAACGCCAAAAACTTGGAATAGACAAAGAAG
CTGCTCTTCTGAACCTTAAAGATAATCAAGAACTATCTGAACAAGGGATATCTTTTTCAC
AAACTTGCCTCACACAATTTTTTGAGGACGCCTTCCCAGACTTGCCCACTGAAGGCGTTA
CAAGTCTAGTTGACTTTCTCACCAGTGAGGAAGTTGTGTGTCATGTGGCTAGAAACCTGG
CTGTGGAGCAGTTAGCGCTGAGTGCAGAGTTTCCTGTTCCCCCGCCTGTGTTAAGGCAGA
CTTTCTTTGCAGTGATTGGAGCCCTGTTACAGAGCAGTGGACCAGAGAGGACTGCACTTT
TCATCAGGGACTTCTTAATTACGCAAATGACTGGAAAAGAACTCTTTGAGATGTGGACGA
TAACAAATCCCATGGGGTTACTGGTAGAAGAACTGAAGAAAAGGAAGATTTCAGCTCCCG
AATCTAGACTTACTAGGCAGTCTGGAAGCACCACAGCTCTCCCTGTATATTTTGTTGGCT
TATACTGTGATAGAAAGTTGATTGCGGAAGGTCCTGGGGAGACAGTGCTGGTTGCGGAAG
AAGAAGCTGCCCGAGTGGCCCTTAGGAAACTCTTTGGGTTCACCGAGAATCGCCGGCCCT
GGGACTATTCCAAGCCCAAAGAGCATGTCAGAGCAGAAAAGACCATCACTGCCAGCTAGC
CAGCCAAAGAGATGGCAGCCTGAAATTATGAGCAAAATGGTGAGACAGACGTCAGAGATG
TTCAAAGTTGGACATTTTTCAAATTGTAAAGAAATGTGTCTCATTCCTCATACTGAGTTC
CTAAAATTAAGTATTTATCAGGTCACTTCTTTTTCTTTTTCATTTTTTTTTTGTCAAAAG
TCTTTTTTTGATAGTTTTCAATAAATTTTAACTAAAGTCCTTGATTTTATTATTGTATTT
AACTTGTACAGTTAGGTGTATTTTATTCCCTTCTAGCTTTAGGTATCATAACTTGAATAT
ATGTTTTACGTGAACTTTGCTATATTACCAATAAAAAGTTATTCTTTAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810311|ref|XP_610905.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810311|ref|XP_610905.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               318-517, - strand, RNAz p=0.776013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-517, - strand, RNAz p=0.776013

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               199-669, gnl|bosTau2|chr2 (68230703-68231173)
               

               
               199-669, gnl|Hg17|chr2 (224649755-224650225)
               

               
               199-669, gnl|Mm7|chr1 (79992130-79992600)
               


               
               847-1366, gnl|bosTau2|chr2 (68236089-68236630)
               

               
               847-1366, gnl|Hg17|chr2 (224657084-224657926)
               

               
               847-1366, gnl|Mm7|chr1 (79995290-79995769)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-669, gnl|bosTau2|chr2 (68230703-68231173)
               

               
               199-669, gnl|Hg17|chr2 (224649755-224650225)
               

               
               199-669, gnl|Mm7|chr1 (79992130-79992600)
               


               
               847-1366, gnl|bosTau2|chr2 (68236089-68236630)
               

               
               847-1366, gnl|Hg17|chr2 (224657084-224657926)
               

               
               847-1366, gnl|Mm7|chr1 (79995290-79995769)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               hea (0.817996)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               cje (0.330469)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               med (0.116252)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.817996)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               cje (0.330469)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               med (0.116252)

	199-669, gnl\|bosTau2\|chr2 (68230703-68231173)
	199-669, gnl\|Hg17\|chr2 (224649755-224650225)
	199-669, gnl\|Mm7\|chr1 (79992130-79992600)

	847-1366, gnl\|bosTau2\|chr2 (68236089-68236630)
	847-1366, gnl\|Hg17\|chr2 (224657084-224657926)
	847-1366, gnl\|Mm7\|chr1 (79995290-79995769)

	hea (0.817996)
	nlu (0.383362)
	rec (0.346141)
	cje (0.330469)
	csk (0.281492)
	che (0.272628)
	cbe (0.239234)
	aor (0.195274)
	fty (0.17584)
	cut (0.169924)
	nje (0.16592)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	cst (0.140036)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	kid (0.129735)
	eep (0.122564)
	med (0.116252)