Ss1.1-Thy1-THY010096G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAAGGAGCTGACTGGGGGAGTTTGAGGCGGCGGGCGGCGGCAGCGACCCAGGCCTGG ATCAGCCCCGACGCGGAAGTGTTCCGGGGTCCGTGGGGAGCAGGAGAGGGGGTAGCGGCC CGGCCCGCTCGGGGCACGATGTTGAACATGTGGAAAGTGCGGGAGCTGGTGGACAAAGCC ACCAATGTGGTTATGAATTATTCAGAGATCGAGTCTAAGGTTCGAGAAGCAACGAATGAC GATCCTTGGGGACCTTCTGGGCAACTCATGGGAGAGATTGCCAAGGCTACATTTATGTAT GAACAATTTCCAGAACTTATGAACATGCTTTGGTCACGAATGTTAAAAGACAACAAAAAA AATTGGAGAAGAGTTTATAAGTCATTGCTACTCCTAGCTTACCTCATAAGGAATGGATCA GAGCGTGTTGTTACAAGTGCCAGAGAACACATTTATGATTTGCGATCCCTGGAAAATTAC CACTTTGTAGATGAGCATGGCAAGGATCAAGGTATAAATATTCGCCAGAAGGTGAAAGAA TTGGTTGAATTTGCCCAAGATGATGACAGGCTTCGTGAAGAGCGTAAGAAAGCAAAGAAG AACAAAGACAAGTATGTTGGGGTTTCCTCAGACAGTGTTGGAGGATTCAGATACAGTGAA AGATATGATCCTGAGCCCAGATCAAAATGGGATGAGGAGTGGGATAAAAACAAGAGTGCT TTTCCATTCAGTGATAAATTAGGTGAACTGAGTGATAAAATTGGAAGCACAATTGATGAC ACCATCAGCAAGTTTCGGAGGAAAGATAGAGAAGACTCTCCAGAAAGATGCAGCGACAGC GATGAGGAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAAGGAGCTGACTGGGGGAGTTTGAGGCGGCGGGCGGCGGCAGCGACCCAGGCCTGG ATCAGCCCCGACGCGGAAGTGTTCCGGGGTCCGTGGGGAGCAGGAGAGGGGGTAGCGGCC CGGCCCGCTCGGGGCACGATGTTGAACATGTGGAAAGTGCGGGAGCTGGTGGACAAAGCC ACCAATGTGGTTATGAATTATTCAGAGATCGAGTCTAAGGTTCGAGAAGCAACGAATGAC GATCCTTGGGGACCTTCTGGGCAACTCATGGGAGAGATTGCCAAGGCTACATTTATGTAT GAACAATTTCCAGAACTTATGAACATGCTTTGGTCACGAATGTTAAAAGACAACAAAAAA AATTGGAGAAGAGTTTATAAGTCATTGCTACTCCTAGCTTACCTCATAAGGAATGGATCA GAGCGTGTTGTTACAAGTGCCAGAGAACACATTTATGATTTGCGATCCCTGGAAAATTAC CACTTTGTAGATGAGCATGGCAAGGATCAAGGTATAAATATTCGCCAGAAGGTGAAAGAA TTGGTTGAATTTGCCCAAGATGATGACAGGCTTCGTGAAGAGCGTAAGAAAGCAAAGAAG AACAAAGACAAGTATGTTGGGGTTTCCTCAGACAGTGTTGGAGGATTCAGATACAGTGAA AGATATGATCCTGAGCCCAGATCAAAATGGGATGAGGAGTGGGATAAAAACAAGAGTGCT TTTCCATTCAGTGATAAATTAGGTGAACTGAGTGATAAAATTGGAAGCACAATTGATGAC ACCATCAGCAAGTTTCGGAGGAAAGATAGAGAAGACTCTCCAGAAAGATGCAGCGACAGC GATGAGGAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 656-833, + strand, RNAz p=0.861606 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 656-833, + strand, RNAz p=0.861606 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 8-179, gnl|bosTau2|chr7 (46983490-46983663) | |
| 8-179, gnl|canFam2|chr4 (55650030-55649831) | |
| 8-179, gnl|dasNov1|scaffold_61515 (44755-44953) | |
| 8-179, gnl|echTel1|scaffold_232481 (9887-9695) | |
| 8-179, gnl|fr1|chrUn (44023477-44023278) | |
| 8-179, gnl|hg17|chr5 (157218466-157218664) | |
| 8-179, gnl|Hg17|chr5 (157218666-157218516) | |
| 8-179, gnl|loxAfr1|scaffold_1829 (171581-171783) | |
| 8-179, gnl|mm7|chr11 (45808997-45808796) | |
| 8-179, gnl|Mm7|chr11 (45808792-45808945) | |
| 8-179, gnl|monDom2|scaffold_6 (47585075-47584829) | |
| 8-179, gnl|oryCun1|scaffold_213191 (41120-41321) | |
| 8-179, gnl|panTro1|chr4 (164363712-164363910) | |
| 8-179, gnl|rheMac2|chr6 (154280470-154280668) | |
| 8-179, gnl|rn3|chr10 (30997325-30997123) | |
| 8-179, gnl|tetNig1|chr7 (7466026-7465824) | |
| 180-285, gnl|bosTau2|chr7 (47013405-47013510) | |
| 180-285, gnl|canFam2|chr4 (55680921-55680810) | |
| 180-285, gnl|danRer3|chr14 (58823068-58823179) | |
| 180-285, gnl|dasNov1|scaffold_47993 (2118-2013) | |
| 180-285, gnl|echTel1|scaffold_324168 (105261-105372) | |
| 180-285, gnl|fr1|chrUn (141443674-141443782) | |
| 180-285, gnl|galGal2|chr13 (10231491-10231380) | |
| 180-285, gnl|hg17|chr5 (157177023-157177134) | |
| 180-285, gnl|Hg17|chr5 (157177133-157177028) | |
| 180-285, gnl|loxAfr1|scaffold_1829 (141662-141773) | |
| 180-285, gnl|mm7|chr11 (45840575-45840464) | |
| 180-285, gnl|Mm7|chr11 (45840463-45840568) | |
| 180-285, gnl|monDom2|scaffold_6 (47620808-47620697) | |
| 180-285, gnl|oryCun1|scaffold_213191 (4603-4715) | |
| 180-285, gnl|panTro1|chr4 (164320734-164320845) | |
| 180-285, gnl|rheMac2|chr19 (61710767-61710667) | |
| 180-285, gnl|rn3|chr10 (31025134-31025023) | |
| 180-285, gnl|tetNig1|chr7 (7467149-7467039) | |
| 180-285, gnl|xenTro1|scaffold_669 (423598-423487) | |
| 374-497, gnl|bosTau2|chr7 (47015344-47015468) | |
| 374-497, gnl|Hg17|chr5 (157173888-157173764) | |
| 374-497, gnl|Mm7|chr11 (45843175-45843299) | |
| 656-833, gnl|bosTau2|chr7 (47019540-47019717) | |
| 656-833, gnl|canFam2|chr4 (55687018-55686841) | |
| 656-833, gnl|danRer3|chr14 (58820790-58820970) | |
| 656-833, gnl|dasNov1|scaffold_47993 (2660-2493) | |
| 656-833, gnl|echTel1|scaffold_324168 (97271-97448) | |
| 656-833, gnl|fr1|chrUn (141441319-141441499) | |
| 656-833, gnl|galGal2|chr13 (10238444-10238270) | |
| 656-833, gnl|hg17|chr5 (157169212-157169389) | |
| 656-833, gnl|Hg17|chr5 (157169391-157169214) | |
| 656-833, gnl|loxAfr1|scaffold_1829 (134915-135092) | |
| 656-833, gnl|mm7|chr11 (45847556-45847379) | |
| 656-833, gnl|Mm7|chr11 (45847375-45847552) | |
| 656-833, gnl|monDom2|scaffold_6 (47627899-47627722) | |
| 656-833, gnl|oryCun1|scaffold_209668 (40540-40718) | |
| 656-833, gnl|panTro1|chr4 (164312923-164313100) | |
| 656-833, gnl|rheMac2|chr6 (154230488-154230665) | |
| 656-833, gnl|rn3|chr10 (31033225-31033048) | |
| 656-833, gnl|tetNig1|chr7 (7468216-7468065) | |
| 656-833, gnl|xenTro1|scaffold_669 (433593-433416) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-179, gnl|bosTau2|chr7 (46983490-46983663) | |
| 8-179, gnl|canFam2|chr4 (55650030-55649831) | |
| 8-179, gnl|dasNov1|scaffold_61515 (44755-44953) | |
| 8-179, gnl|echTel1|scaffold_232481 (9887-9695) | |
| 8-179, gnl|fr1|chrUn (44023477-44023278) | |
| 8-179, gnl|hg17|chr5 (157218466-157218664) | |
| 8-179, gnl|Hg17|chr5 (157218666-157218516) | |
| 8-179, gnl|loxAfr1|scaffold_1829 (171581-171783) | |
| 8-179, gnl|mm7|chr11 (45808997-45808796) | |
| 8-179, gnl|Mm7|chr11 (45808792-45808945) | |
| 8-179, gnl|monDom2|scaffold_6 (47585075-47584829) | |
| 8-179, gnl|oryCun1|scaffold_213191 (41120-41321) | |
| 8-179, gnl|panTro1|chr4 (164363712-164363910) | |
| 8-179, gnl|rheMac2|chr6 (154280470-154280668) | |
| 8-179, gnl|rn3|chr10 (30997325-30997123) | |
| 8-179, gnl|tetNig1|chr7 (7466026-7465824) | |
| 180-285, gnl|bosTau2|chr7 (47013405-47013510) | |
| 180-285, gnl|canFam2|chr4 (55680921-55680810) | |
| 180-285, gnl|danRer3|chr14 (58823068-58823179) | |
| 180-285, gnl|dasNov1|scaffold_47993 (2118-2013) | |
| 180-285, gnl|echTel1|scaffold_324168 (105261-105372) | |
| 180-285, gnl|fr1|chrUn (141443674-141443782) | |
| 180-285, gnl|galGal2|chr13 (10231491-10231380) | |
| 180-285, gnl|hg17|chr5 (157177023-157177134) | |
| 180-285, gnl|Hg17|chr5 (157177133-157177028) | |
| 180-285, gnl|loxAfr1|scaffold_1829 (141662-141773) | |
| 180-285, gnl|mm7|chr11 (45840575-45840464) | |
| 180-285, gnl|Mm7|chr11 (45840463-45840568) | |
| 180-285, gnl|monDom2|scaffold_6 (47620808-47620697) | |
| 180-285, gnl|oryCun1|scaffold_213191 (4603-4715) | |
| 180-285, gnl|panTro1|chr4 (164320734-164320845) | |
| 180-285, gnl|rheMac2|chr19 (61710767-61710667) | |
| 180-285, gnl|rn3|chr10 (31025134-31025023) | |
| 180-285, gnl|tetNig1|chr7 (7467149-7467039) | |
| 180-285, gnl|xenTro1|scaffold_669 (423598-423487) | |
| 374-497, gnl|bosTau2|chr7 (47015344-47015468) | |
| 374-497, gnl|Hg17|chr5 (157173888-157173764) | |
| 374-497, gnl|Mm7|chr11 (45843175-45843299) | |
| 656-833, gnl|bosTau2|chr7 (47019540-47019717) | |
| 656-833, gnl|canFam2|chr4 (55687018-55686841) | |
| 656-833, gnl|danRer3|chr14 (58820790-58820970) | |
| 656-833, gnl|dasNov1|scaffold_47993 (2660-2493) | |
| 656-833, gnl|echTel1|scaffold_324168 (97271-97448) | |
| 656-833, gnl|fr1|chrUn (141441319-141441499) | |
| 656-833, gnl|galGal2|chr13 (10238444-10238270) | |
| 656-833, gnl|hg17|chr5 (157169212-157169389) | |
| 656-833, gnl|Hg17|chr5 (157169391-157169214) | |
| 656-833, gnl|loxAfr1|scaffold_1829 (134915-135092) | |
| 656-833, gnl|mm7|chr11 (45847556-45847379) | |
| 656-833, gnl|Mm7|chr11 (45847375-45847552) | |
| 656-833, gnl|monDom2|scaffold_6 (47627899-47627722) | |
| 656-833, gnl|oryCun1|scaffold_209668 (40540-40718) | |
| 656-833, gnl|panTro1|chr4 (164312923-164313100) | |
| 656-833, gnl|rheMac2|chr6 (154230488-154230665) | |
| 656-833, gnl|rn3|chr10 (31033225-31033048) | |
| 656-833, gnl|tetNig1|chr7 (7468216-7468065) | |
| 656-833, gnl|xenTro1|scaffold_669 (433593-433416) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| lun (0.150489) | |
| ldo (0.0970026) |