Ss1.1-Thy1-THY010096H05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGAAGACTACCTCATGTGGTTCTTGCATCAAGCAGGCATGAAAGCTAGACCATCTAT AATACAGGATACTGTAACACTCTGTTCCTACCCTTTCATCTTTGATGCCCAAGCCAAGAC CAAAATGTTACAGACTGATGCTGAACTGCAGATGCAGGTGGCGGTCAACGGGGCCAACCT GCAGAATGTCTTCATGCTTCTCACCCTGGAGCCTCTGCTGGCCAGAAGCCCCTTCCTGGT CCTTCACGTGCGCAGGAACAACCTTGTTGGGGACGCCCTGCGAGAGCTGAGCATCCATTC TGACATCGATCTGAAAAAGCCTCTCAAGGTCATTTTTGATGGCGAAGAAGCAGTGGATGC CGGTGGTGTCACAAAGGAGTTCTTCCTTTTACTATTAAAAGAGCTGTTGAATCCCATCTA TGGAATGTTTACCTACTACCAGGACTCCAATCTCCTGTGGTTTTCAGATACGTGTTTTGT AGAGCACAACTGGTTTCACTTGATTGGCATAACCTGCGGTCTGGCCATCTACAACTCCAC GGTGGTCGACCTGCACTTCCCGCTGGCGCTCTATAAGAAGCTCCTGAACGTGCAGCCCGG CCTGGAAGACCTGAAGGAGCTGTCCCCCGCGGAAGGAAGGAGTCTTCAGGAGCTTTTAGA TTACCCCGGGGAAGATATCGAGGAGACCTTCTGCCTCAACTTCACGATTTGTCGCGAAAG CTATGGCGTCGTTGAGCAGAAGAAGCTGATACCCGGGGGAGACAGAGTCACCGTGTGCAA GGAGAACAGGCAGGAGTTTGTGGATGCTTATGTGAATTACGTCTTCCAAATCTCCGTTGG CGAGTGGTACACAGCTTTCTCCAGCGGCTTCCTCAAGGTGTGTGGCGGCAAAGTGCTGGA GCTCTTCCAGCCTTCCGAACTGAGGGCCATGATGGTGGGGAACAGCAACTACAACTGGGA GGAACTGGAAGAGACCGCCGTCTACAAGGGTGACTACTCAGCCGCACATCCCACGGTGAA ACTGTTTTGGGAAACATTTCACGAGTTCCCTTTGGAAAAGAAGAAGAAGTTTCTCCTGTT CCTCACGGGCAGCGACCGGATTCCCATCTACGGCATGGCCAGCCTGCAGATTGTCATCCA GTCCACAGCCAGCGGGGAGGACTACTTGCCTGTGGCCCACACGTGCTACAACCTTCTCGA CCTGCCCAAGTACAGCAGCAAAGAGGTCCTGCGCGCCCGGCTGACCCAGGCCCTTGACAA CTACGAGGGGTTCAGTCTGGCCTGAGGCTCCGCAGCCTGCCCCCCGATTTCCCTTCCTTC CTCACCGTCCACATCGAGGCCCATACCATACAGAAAATCATGGGGAGTGAGTTCTATTTT TTTATGGTCCAAGTGGGTTGCAGCTTTGGAATCCTGAACCCGATGGGTGAGTGTCTGGGG TGGCAAGCAGTAACCTTTTGGAAAAATCAGGGGTTGGGGATGGGGGTGACAGATGGGCCC TGGAATGGGAGGTGTTTTTGTTTTTCAGCCAAATCCCCCAGGTTCCTTGCACTCGTGGCC GTGTTGCACTCTGCTGGATAAAATGCCAGTGGATTTTGACACTCCCGTTTCCCCAGTGTC TCTCTCAGCCCTGATCTCTCCTCACCAAGCTTCCTTGCCCTTGGCTCCTCCCTTCTCCCT CCTCTGCAAGAGCAATCAGACCCTCCCGTCCTTGCCCACCTGCACATGCAGGACGTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGAAGACTACCTCATGTGGTTCTTGCATCAAGCAGGCATGAAAGCTAGACCATCTAT AATACAGGATACTGTAACACTCTGTTCCTACCCTTTCATCTTTGATGCCCAAGCCAAGAC CAAAATGTTACAGACTGATGCTGAACTGCAGATGCAGGTGGCGGTCAACGGGGCCAACCT GCAGAATGTCTTCATGCTTCTCACCCTGGAGCCTCTGCTGGCCAGAAGCCCCTTCCTGGT CCTTCACGTGCGCAGGAACAACCTTGTTGGGGACGCCCTGCGAGAGCTGAGCATCCATTC TGACATCGATCTGAAAAAGCCTCTCAAGGTCATTTTTGATGGCGAAGAAGCAGTGGATGC CGGTGGTGTCACAAAGGAGTTCTTCCTTTTACTATTAAAAGAGCTGTTGAATCCCATCTA TGGAATGTTTACCTACTACCAGGACTCCAATCTCCTGTGGTTTTCAGATACGTGTTTTGT AGAGCACAACTGGTTTCACTTGATTGGCATAACCTGCGGTCTGGCCATCTACAACTCCAC GGTGGTCGACCTGCACTTCCCGCTGGCGCTCTATAAGAAGCTCCTGAACGTGCAGCCCGG CCTGGAAGACCTGAAGGAGCTGTCCCCCGCGGAAGGAAGGAGTCTTCAGGAGCTTTTAGA TTACCCCGGGGAAGATATCGAGGAGACCTTCTGCCTCAACTTCACGATTTGTCGCGAAAG CTATGGCGTCGTTGAGCAGAAGAAGCTGATACCCGGGGGAGACAGAGTCACCGTGTGCAA GGAGAACAGGCAGGAGTTTGTGGATGCTTATGTGAATTACGTCTTCCAAATCTCCGTTGG CGAGTGGTACACAGCTTTCTCCAGCGGCTTCCTCAAGGTGTGTGGCGGCAAAGTGCTGGA GCTCTTCCAGCCTTCCGAACTGAGGGCCATGATGGTGGGGAACAGCAACTACAACTGGGA GGAACTGGAAGAGACCGCCGTCTACAAGGGTGACTACTCAGCCGCACATCCCACGGTGAA ACTGTTTTGGGAAACATTTCACGAGTTCCCTTTGGAAAAGAAGAAGAAGTTTCTCCTGTT CCTCACGGGCAGCGACCGGATTCCCATCTACGGCATGGCCAGCCTGCAGATTGTCATCCA GTCCACAGCCAGCGGGGAGGACTACTTGCCTGTGGCCCACACGTGCTACAACCTTCTCGA CCTGCCCAAGTACAGCAGCAAAGAGGTCCTGCGCGCCCGGCTGACCCAGGCCCTTGACAA CTACGAGGGGTTCAGTCTGGCCTGAGGCTCCGCAGCCTGCCCCCCGATTTCCCTTCCTTC CTCACCGTCCACATCGAGGCCCATACCATACAGAAAATCATGGGGAGTGAGTTCTATTTT TTTATGGTCCAAGTGGGTTGCAGCTTTGGAATCCTGAACCCGATGGGTGAGTGTCTGGGG TGGCAAGCAGTAACCTTTTGGAAAAATCAGGGGTTGGGGATGGGGGTGACAGATGGGCCC TGGAATGGGAGGTGTTTTTGTTTTTCAGCCAAATCCCCCAGGTTCCTTGCACTCGTGGCC GTGTTGCACTCTGCTGGATAAAATGCCAGTGGATTTTGACACTCCCGTTTCCCCAGTGTC TCTCTCAGCCCTGATCTCTCCTCACCAAGCTTCCTTGCCCTTGGCTCCTCCCTTCTCCCT CCTCTGCAAGAGCAATCAGACCCTCCCGTCCTTGCCCACCTGCACATGCAGGACGTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 856-973, + strand, RNAz p=0.83573 | |
| 884-1171, - strand, RNAz p=0.875973 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 856-973, + strand, RNAz p=0.83573 | |
| 884-1171, - strand, RNAz p=0.875973 |
| Aligned organism(s): 74 entry(ies) | More info |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
| 147-330, gnl|bosTau2|chr6 (19434385-19434202) | |
| 147-330, gnl|Hg17|chr4 (89956282-89956465) | |
| 147-330, gnl|Mm7|chr6 (58855513-58855696) | |
| 472-640, gnl|bosTau2|chr6 (19430457-19430289) | |
| 472-640, gnl|canFam2|chr32 (14906216-14906403) | |
| 472-640, gnl|danRer3|chr10 (24210236-24210410) | |
| 472-640, gnl|dasNov1|scaffold_51611 (9790-9603) | |
| 472-640, gnl|echTel1|scaffold_30183 (2495-2678) | |
| 472-640, gnl|fr1|chrUn (214059149-214058980) | |
| 472-640, gnl|galGal2|chr4 (35550630-35550813) | |
| 472-640, gnl|hg17|chr4 (89959487-89959670) | |
| 472-640, gnl|Hg17|chr4 (89959487-89959655) | |
| 472-640, gnl|loxAfr1|scaffold_3727 (86036-86219) | |
| 472-640, gnl|mm7|chr6 (58858183-58858370) | |
| 472-640, gnl|Mm7|chr6 (58858183-58858351) | |
| 472-640, gnl|monDom2|scaffold_32 (21143569-21143398) | |
| 472-640, gnl|oryCun1|scaffold_195027 (7096-7283) | |
| 472-640, gnl|panTro1|chr3 (105956139-105956322) | |
| 472-640, gnl|rheMac2|chr5 (81648383-81648566) | |
| 472-640, gnl|rn3|chr4 (88025707-88025894) | |
| 472-640, gnl|tetNig1|chr18 (6547065-6547235) | |
| 472-640, gnl|xenTro1|scaffold_424 (755420-755606) | |
| 787-973, gnl|bosTau2|chr6 (19347992-19347806) | |
| 787-973, gnl|canFam2|chr32 (14933312-14933525) | |
| 787-973, gnl|danRer3|chr10 (24222503-24222723) | |
| 787-973, gnl|dasNov1|scaffold_81714 (5384-5168) | |
| 787-973, gnl|echTel1|scaffold_308351 (184-399) | |
| 787-973, gnl|fr1|chrUn (200020612-200020419) | |
| 787-973, gnl|galGal2|chr4 (35555999-35556200) | |
| 787-973, gnl|hg17|chr4 (89982412-89982625) | |
| 787-973, gnl|Hg17|chr4 (89982424-89982610) | |
| 787-973, gnl|loxAfr1|scaffold_16409 (26617-26829) | |
| 787-973, gnl|mm7|chr6 (58884646-58884859) | |
| 787-973, gnl|Mm7|chr6 (58884658-58884844) | |
| 787-973, gnl|monDom2|scaffold_32 (21121638-21121426) | |
| 787-973, gnl|oryCun1|scaffold_205206 (155689-155475) | |
| 787-973, gnl|panTro1|chr3 (105979282-105979495) | |
| 787-973, gnl|rheMac2|chr5 (81669871-81670084) | |
| 787-973, gnl|rn3|chr4 (88056624-88056837) | |
| 787-973, gnl|tetNig1|chr18 (6548416-6548610) | |
| 787-973, gnl|xenTro1|scaffold_424 (758403-758606) | |
| 1077-1423, gnl|bosTau2|chr6 (19344093-19343758) | |
| 1077-1423, gnl|canFam2|chr32 (14935957-14936187) | |
| 1077-1423, gnl|danRer3|chr10 (24225122-24225347) | |
| 1077-1423, gnl|dasNov1|scaffold_1572 (99756-99526) | |
| 1077-1423, gnl|echTel1|scaffold_308351 (2779-3013) | |
| 1077-1423, gnl|fr1|chrUn (200020136-200019904) | |
| 1077-1423, gnl|galGal2|chr4 (35557463-35557687) | |
| 1077-1423, gnl|hg17|chr4 (89985066-89985296) | |
| 1077-1423, gnl|Hg17|chr4 (89985081-89985534) | |
| 1077-1423, gnl|loxAfr1|scaffold_16409 (28954-29184) | |
| 1077-1423, gnl|mm7|chr6 (58886949-58887177) | |
| 1077-1423, gnl|Mm7|chr6 (58886962-58887436) | |
| 1077-1423, gnl|monDom2|scaffold_32 (21115017-21114787) | |
| 1077-1423, gnl|oryCun1|scaffold_205206 (152809-152579) | |
| 1077-1423, gnl|panTro1|chr3 (105982367-105982597) | |
| 1077-1423, gnl|rheMac2|chr5 (81672671-81672901) | |
| 1077-1423, gnl|rn3|chr4 (88058964-88059192) | |
| 1077-1423, gnl|tetNig1|chr18 (6549110-6549338) | |
| 1077-1423, gnl|xenTro1|scaffold_424 (760878-761095) | |
| 1529-1737, gnl|bosTau2|chr6 (19343756-19343552) | |
| 1529-1737, gnl|canFam2|chr32 (14936414-14936771) | |
| 1529-1737, gnl|dasNov1|scaffold_1572 (99261-98894) | |
| 1529-1737, gnl|echTel1|scaffold_308351 (3242-3574) | |
| 1529-1737, gnl|hg17|chr4 (89985535-89985904) | |
| 1529-1737, gnl|Hg17|chr4 (89985536-89985745) | |
| 1529-1737, gnl|loxAfr1|scaffold_16409 (29423-29773) | |
| 1529-1737, gnl|mm7|chr6 (58887437-58887765) | |
| 1529-1737, gnl|Mm7|chr6 (58887438-58887639) | |
| 1529-1737, gnl|monDom2|scaffold_32 (21114539-21114156) | |
| 1529-1737, gnl|oryCun1|scaffold_205206 (152330-151978) | |
| 1529-1737, gnl|panTro1|chr3 (105982836-105983205) | |
| 1529-1737, gnl|rheMac2|chr5 (81673139-81673508) | |
| 1529-1737, gnl|rn3|chr4 (88059447-88059786) |
| Aligned organism(s): 74 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-330, gnl|bosTau2|chr6 (19434385-19434202) | |
| 147-330, gnl|Hg17|chr4 (89956282-89956465) | |
| 147-330, gnl|Mm7|chr6 (58855513-58855696) | |
| 472-640, gnl|bosTau2|chr6 (19430457-19430289) | |
| 472-640, gnl|canFam2|chr32 (14906216-14906403) | |
| 472-640, gnl|danRer3|chr10 (24210236-24210410) | |
| 472-640, gnl|dasNov1|scaffold_51611 (9790-9603) | |
| 472-640, gnl|echTel1|scaffold_30183 (2495-2678) | |
| 472-640, gnl|fr1|chrUn (214059149-214058980) | |
| 472-640, gnl|galGal2|chr4 (35550630-35550813) | |
| 472-640, gnl|hg17|chr4 (89959487-89959670) | |
| 472-640, gnl|Hg17|chr4 (89959487-89959655) | |
| 472-640, gnl|loxAfr1|scaffold_3727 (86036-86219) | |
| 472-640, gnl|mm7|chr6 (58858183-58858370) | |
| 472-640, gnl|Mm7|chr6 (58858183-58858351) | |
| 472-640, gnl|monDom2|scaffold_32 (21143569-21143398) | |
| 472-640, gnl|oryCun1|scaffold_195027 (7096-7283) | |
| 472-640, gnl|panTro1|chr3 (105956139-105956322) | |
| 472-640, gnl|rheMac2|chr5 (81648383-81648566) | |
| 472-640, gnl|rn3|chr4 (88025707-88025894) | |
| 472-640, gnl|tetNig1|chr18 (6547065-6547235) | |
| 472-640, gnl|xenTro1|scaffold_424 (755420-755606) | |
| 787-973, gnl|bosTau2|chr6 (19347992-19347806) | |
| 787-973, gnl|canFam2|chr32 (14933312-14933525) | |
| 787-973, gnl|danRer3|chr10 (24222503-24222723) | |
| 787-973, gnl|dasNov1|scaffold_81714 (5384-5168) | |
| 787-973, gnl|echTel1|scaffold_308351 (184-399) | |
| 787-973, gnl|fr1|chrUn (200020612-200020419) | |
| 787-973, gnl|galGal2|chr4 (35555999-35556200) | |
| 787-973, gnl|hg17|chr4 (89982412-89982625) | |
| 787-973, gnl|Hg17|chr4 (89982424-89982610) | |
| 787-973, gnl|loxAfr1|scaffold_16409 (26617-26829) | |
| 787-973, gnl|mm7|chr6 (58884646-58884859) | |
| 787-973, gnl|Mm7|chr6 (58884658-58884844) | |
| 787-973, gnl|monDom2|scaffold_32 (21121638-21121426) | |
| 787-973, gnl|oryCun1|scaffold_205206 (155689-155475) | |
| 787-973, gnl|panTro1|chr3 (105979282-105979495) | |
| 787-973, gnl|rheMac2|chr5 (81669871-81670084) | |
| 787-973, gnl|rn3|chr4 (88056624-88056837) | |
| 787-973, gnl|tetNig1|chr18 (6548416-6548610) | |
| 787-973, gnl|xenTro1|scaffold_424 (758403-758606) | |
| 1077-1423, gnl|bosTau2|chr6 (19344093-19343758) | |
| 1077-1423, gnl|canFam2|chr32 (14935957-14936187) | |
| 1077-1423, gnl|danRer3|chr10 (24225122-24225347) | |
| 1077-1423, gnl|dasNov1|scaffold_1572 (99756-99526) | |
| 1077-1423, gnl|echTel1|scaffold_308351 (2779-3013) | |
| 1077-1423, gnl|fr1|chrUn (200020136-200019904) | |
| 1077-1423, gnl|galGal2|chr4 (35557463-35557687) | |
| 1077-1423, gnl|hg17|chr4 (89985066-89985296) | |
| 1077-1423, gnl|Hg17|chr4 (89985081-89985534) | |
| 1077-1423, gnl|loxAfr1|scaffold_16409 (28954-29184) | |
| 1077-1423, gnl|mm7|chr6 (58886949-58887177) | |
| 1077-1423, gnl|Mm7|chr6 (58886962-58887436) | |
| 1077-1423, gnl|monDom2|scaffold_32 (21115017-21114787) | |
| 1077-1423, gnl|oryCun1|scaffold_205206 (152809-152579) | |
| 1077-1423, gnl|panTro1|chr3 (105982367-105982597) | |
| 1077-1423, gnl|rheMac2|chr5 (81672671-81672901) | |
| 1077-1423, gnl|rn3|chr4 (88058964-88059192) | |
| 1077-1423, gnl|tetNig1|chr18 (6549110-6549338) | |
| 1077-1423, gnl|xenTro1|scaffold_424 (760878-761095) | |
| 1529-1737, gnl|bosTau2|chr6 (19343756-19343552) | |
| 1529-1737, gnl|canFam2|chr32 (14936414-14936771) | |
| 1529-1737, gnl|dasNov1|scaffold_1572 (99261-98894) | |
| 1529-1737, gnl|echTel1|scaffold_308351 (3242-3574) | |
| 1529-1737, gnl|hg17|chr4 (89985535-89985904) | |
| 1529-1737, gnl|Hg17|chr4 (89985536-89985745) | |
| 1529-1737, gnl|loxAfr1|scaffold_16409 (29423-29773) | |
| 1529-1737, gnl|mm7|chr6 (58887437-58887765) | |
| 1529-1737, gnl|Mm7|chr6 (58887438-58887639) | |
| 1529-1737, gnl|monDom2|scaffold_32 (21114539-21114156) | |
| 1529-1737, gnl|oryCun1|scaffold_205206 (152330-151978) | |
| 1529-1737, gnl|panTro1|chr3 (105982836-105983205) | |
| 1529-1737, gnl|rheMac2|chr5 (81673139-81673508) | |
| 1529-1737, gnl|rn3|chr4 (88059447-88059786) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| ton (0.1755) | |
| jej (0.0989218) |