Non-Coding RNA Search

Ss1.1-Thy1-THY010096H09.5

Sequence:


               
               CCCCAGCCGAAGGGGGCGAAGGCCGAGGGGCCGAGGCGGGATCTCGGGTTTGAGAGAAAG
CGGGGGCGTGGCTTCCTCGCTGGGTGGGCGGCCACTCTGCAGCCCCGCCCCCGTCGGCAG
CTGACTCCGCGCGCCAAAATCAAACCCGCGGGCCCGCCGTCCGGAGAACCTGCAAGGGGT
GAGGGTTCCGCGTGCGGGTCCACACGAGCTCCGCGGTAGCGTGAGCCCCGGCGCGCGCAG
TCTGCGGCACCTCCCAGCCCCCTTGCCCAACGCCCTCGGGGCCGCCACGGGCGAGGCATG
GCCACCCCCCCCAAGAGGAGCTGCCCGTCTTCCCCAGCCAGCTCAGAGGGGAACCGCATC
AAGAAAATTTCCATTGAAGGGAACATCGCTGCGGGGAAGTCAACATTTGTGAATATTCTT
AAACAAGTCTGCGAGGATTGGGAAGTGGTTCCTGAACCTGTTGCCAGGTGGTGCAATGTT
CAGAGTACTCAAAATGAATTTGAGGAATTGACAACATCTCAGAAAAGTGGCGGGAATGTT
CTTCAGATGATGTATGAGAAACCTGAACGATGGTCTTTTACCTTCCAGTCCTATGCCTGC
CTCAGTCGAATACGAGCTCAGCTTGCTGCTCTCAATGGCAAGCTCAAAGATGCAGAGAAA
CCTGTATTATTCTTTGAACGATCTGTGTATAGTGACAGGTATATTTTTGCATCTAATCTG
TATGAATCTGACTGCATGAATGAAACAGAATGGACCATTTATCAAGACTGGCATGACTGG
ATGAATAACCAGTTTGGCCAAAGCCTTGAACTGGATGGAATCATTTATCTTCGCGCCACT
CCAGAGAAATGTTTGAATAGAATATATTTACGGGGAAGAAATGAAGAACAAGGCATTCCT
CTTGAATACTTAGAGAAGCTTCACTATAAGCATGAAAGCTGGCTCCTGCATAGAACACTA
AAAACCAACTTTGATTATCTACAAGAAGTGCCTATCTTAACACTGGATGTTAACGAAGAC
TTTAAAGACAAACACAGCAGTCTGGTTGAAAAGGTAAAAGAATTTTTGAGCACTTTGTGA
TCTTTCCGAAGACTGCAGACAGCCAAATGAGTCCAGATACTTCAGCTCTGTATATCTTTA
TAGCTCCATATTCATACAAGTCCTCTAGAAAACCCAAGTTTTTTTAAATAATTTTTGTTA
TAAGAATTTTTTTGTATGAATCCTATACAAAAGTTTATAACCACTTTCTTTTCTTTTTTG
GGAGTTTTTAAAAACACAGACTTTGGAGTTCCCTTGTAGTGCAGCAGATTAAGGATCCAG
CCTTGTCACTGCTGTGACTTGGGTCGTAGTGGTGGTGTGGATTCAATCCCTAGCCCCAGA
ACTTCTGCTTGCCGTGGGTGTGGCAAAAAAAAAAAAAAAAAGAGTTTTGGAGTTCCTTCT
TTGGTGCAGTGAGTTAAGAATCTCGTGTCTCTGTGGTGGCTCCCTGCTGAAGCGTGGTTT
CCATCCCCTCCCCAGAACAGTGTGTTAAGGATCCAGTGTTGCCGCAGTTGTGACCTAGGT
GACATCTGTGGCTTGGATTTGATCCTTGGCCTGTGAACATCCATATGCTGTTGGTATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGCCGAAGGGGGCGAAGGCCGAGGGGCCGAGGCGGGATCTCGGGTTTGAGAGAAAG
CGGGGGCGTGGCTTCCTCGCTGGGTGGGCGGCCACTCTGCAGCCCCGCCCCCGTCGGCAG
CTGACTCCGCGCGCCAAAATCAAACCCGCGGGCCCGCCGTCCGGAGAACCTGCAAGGGGT
GAGGGTTCCGCGTGCGGGTCCACACGAGCTCCGCGGTAGCGTGAGCCCCGGCGCGCGCAG
TCTGCGGCACCTCCCAGCCCCCTTGCCCAACGCCCTCGGGGCCGCCACGGGCGAGGCATG
GCCACCCCCCCCAAGAGGAGCTGCCCGTCTTCCCCAGCCAGCTCAGAGGGGAACCGCATC
AAGAAAATTTCCATTGAAGGGAACATCGCTGCGGGGAAGTCAACATTTGTGAATATTCTT
AAACAAGTCTGCGAGGATTGGGAAGTGGTTCCTGAACCTGTTGCCAGGTGGTGCAATGTT
CAGAGTACTCAAAATGAATTTGAGGAATTGACAACATCTCAGAAAAGTGGCGGGAATGTT
CTTCAGATGATGTATGAGAAACCTGAACGATGGTCTTTTACCTTCCAGTCCTATGCCTGC
CTCAGTCGAATACGAGCTCAGCTTGCTGCTCTCAATGGCAAGCTCAAAGATGCAGAGAAA
CCTGTATTATTCTTTGAACGATCTGTGTATAGTGACAGGTATATTTTTGCATCTAATCTG
TATGAATCTGACTGCATGAATGAAACAGAATGGACCATTTATCAAGACTGGCATGACTGG
ATGAATAACCAGTTTGGCCAAAGCCTTGAACTGGATGGAATCATTTATCTTCGCGCCACT
CCAGAGAAATGTTTGAATAGAATATATTTACGGGGAAGAAATGAAGAACAAGGCATTCCT
CTTGAATACTTAGAGAAGCTTCACTATAAGCATGAAAGCTGGCTCCTGCATAGAACACTA
AAAACCAACTTTGATTATCTACAAGAAGTGCCTATCTTAACACTGGATGTTAACGAAGAC
TTTAAAGACAAACACAGCAGTCTGGTTGAAAAGGTAAAAGAATTTTTGAGCACTTTGTGA
TCTTTCCGAAGACTGCAGACAGCCAAATGAGTCCAGATACTTCAGCTCTGTATATCTTTA
TAGCTCCATATTCATACAAGTCCTCTAGAAAACCCAAGTTTTTTTAAATAATTTTTGTTA
TAAGAATTTTTTTGTATGAATCCTATACAAAAGTTTATAACCACTTTCTTTTCTTTTTTG
GGAGTTTTTAAAAACACAGACTTTGGAGTTCCCTTGTAGTGCAGCAGATTAAGGATCCAG
CCTTGTCACTGCTGTGACTTGGGTCGTAGTGGTGGTGTGGATTCAATCCCTAGCCCCAGA
ACTTCTGCTTGCCGTGGGTGTGGCAAAAAAAAAAAAAAAAAGAGTTTTGGAGTTCCTTCT
TTGGTGCAGTGAGTTAAGAATCTCGTGTCTCTGTGGTGGCTCCCTGCTGAAGCGTGGTTT
CCATCCCCTCCCCAGAACAGTGTGTTAAGGATCCAGTGTTGCCGCAGTTGTGACCTAGGT
GACATCTGTGGCTTGGATTTGATCCTTGGCCTGTGAACATCCATATGCTGTTGGTATGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827203|ref|XP_609117.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827203|ref|XP_609117.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               585-704, + strand, RNAz p=0.767187

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-704, + strand, RNAz p=0.767187

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               14-396, gnl|bosTau2|chr6 (48641857-48642243)
               

               
               14-396, gnl|Hg17|chr4 (72224334-72224686)
               


               
               489-704, gnl|bosTau2|chr6 (48658067-48658281)
               

               
               489-704, gnl|Hg17|chr4 (72253104-72253318)
               

               
               489-704, gnl|Mm7|chr5 (88712649-88712866)
               


               
               928-1235, gnl|bosTau2|chr16 (2392987-2393290)
               

               
               928-1235, gnl|Hg17|chr4 (72256649-72260289)
               

               
               928-1235, gnl|Mm7|chr6 (59911701-59911986)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-396, gnl|bosTau2|chr6 (48641857-48642243)
               

               
               14-396, gnl|Hg17|chr4 (72224334-72224686)
               


               
               489-704, gnl|bosTau2|chr6 (48658067-48658281)
               

               
               489-704, gnl|Hg17|chr4 (72253104-72253318)
               

               
               489-704, gnl|Mm7|chr5 (88712649-88712866)
               


               
               928-1235, gnl|bosTau2|chr16 (2392987-2393290)
               

               
               928-1235, gnl|Hg17|chr4 (72256649-72260289)
               

               
               928-1235, gnl|Mm7|chr6 (59911701-59911986)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               thg (0.760746)
               

               
               fty (0.703359)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.760746)
               

               
               fty (0.703359)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	14-396, gnl\|bosTau2\|chr6 (48641857-48642243)
	14-396, gnl\|Hg17\|chr4 (72224334-72224686)

	489-704, gnl\|bosTau2\|chr6 (48658067-48658281)
	489-704, gnl\|Hg17\|chr4 (72253104-72253318)
	489-704, gnl\|Mm7\|chr5 (88712649-88712866)

	928-1235, gnl\|bosTau2\|chr16 (2392987-2393290)
	928-1235, gnl\|Hg17\|chr4 (72256649-72260289)
	928-1235, gnl\|Mm7\|chr6 (59911701-59911986)

	thg (0.760746)
	fty (0.703359)
	eep (0.245128)
	med (0.232504)
	sag (0.182715)
	ton (0.1755)
	mcp (0.170648)
	nmm (0.132802)
	sug (0.127291)
	tra (0.123092)
	cbl (0.114797)
	cty (0.10408)
	nbm (0.0993246)