Ss1.1-Thy1-THY010096H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCTCATGGCTGAGATCCAGGACCTGAAAAGCAGGGGAGGCAAGGATGTGGCCATTGA GATTGAAGATCGGAGGATCCAGAGCTGTGTACATTTCATGACTCTAAAGAAGCTTAACCG ATTAGCCCACATCAGGTTGAAGAAAGGAAGAGATCAGACCCATGAGGCCAAGCAGAAAGT GGATGCCTATCACCTGCAGCTCCAGAACCTGTTGTATGAGGTGATGCACCTGCAGAAGGA GATCACCAAATGTCTGGAGTTTAAGTCAAAGCATGAAGAAATTGACCTGGTCAGCTTGGA GGAGTTTTATAAGGAGGCTCCTCCAGATATCAGTAAAGCCGAAGTCACCATGGGAGACCC TCACCAGCAAACTCTTGCACGTCTGGACTGGGAGCTGGAGCAGCGGAAAAGGCTGGCAGA GAAGTACCGAGAGTGCTTATCCAACAAGGAGAAGATCCTCAAGGAGATTGAGGTGAAGAA GGAGTACCTGAGCAGCCTCCAGCCCCGACTCAACAGCATCATGCAGGCTTCCCTCCCAGT GCAAGAGTACCTGTTTATGCCCTTCGACCAGGCTCACAAGCAGTATGAGACAGCCAGACA CCTACCACCTCCCCTCTATGTCCTCTTTGTCCAGGCCACTGCATATGGGCAGGCCTGTGA TAAGACGCTGTCTGTGGCGATAGAAGGCAGCGTGGACGAAGCCAAGGCTCTATTCAAGCC TCCTGAGGACTCCCAAGATGACGAGAGCGACTCGGATGCTGAGGAGGAACAGACCACGAA ACGCCGGCAAAACACTCTGGGAGTTCAGCTGGACGACAAACGCAAGGAGATGCTGAAGAG GCACCCGCTGTCCGTCATGCTGGACCTGAAATGCAAAGATGACAGTGTCCTGCACCTGAC TTTCTACTACCTCATGAACCTCAACATCATGACAGTAAAAGCCAAAGTGACAACCGCCAC AGAGCTGATCACCCCCATCAGTGCAGGTGACTTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCTCATGGCTGAGATCCAGGACCTGAAAAGCAGGGGAGGCAAGGATGTGGCCATTGA GATTGAAGATCGGAGGATCCAGAGCTGTGTACATTTCATGACTCTAAAGAAGCTTAACCG ATTAGCCCACATCAGGTTGAAGAAAGGAAGAGATCAGACCCATGAGGCCAAGCAGAAAGT GGATGCCTATCACCTGCAGCTCCAGAACCTGTTGTATGAGGTGATGCACCTGCAGAAGGA GATCACCAAATGTCTGGAGTTTAAGTCAAAGCATGAAGAAATTGACCTGGTCAGCTTGGA GGAGTTTTATAAGGAGGCTCCTCCAGATATCAGTAAAGCCGAAGTCACCATGGGAGACCC TCACCAGCAAACTCTTGCACGTCTGGACTGGGAGCTGGAGCAGCGGAAAAGGCTGGCAGA GAAGTACCGAGAGTGCTTATCCAACAAGGAGAAGATCCTCAAGGAGATTGAGGTGAAGAA GGAGTACCTGAGCAGCCTCCAGCCCCGACTCAACAGCATCATGCAGGCTTCCCTCCCAGT GCAAGAGTACCTGTTTATGCCCTTCGACCAGGCTCACAAGCAGTATGAGACAGCCAGACA CCTACCACCTCCCCTCTATGTCCTCTTTGTCCAGGCCACTGCATATGGGCAGGCCTGTGA TAAGACGCTGTCTGTGGCGATAGAAGGCAGCGTGGACGAAGCCAAGGCTCTATTCAAGCC TCCTGAGGACTCCCAAGATGACGAGAGCGACTCGGATGCTGAGGAGGAACAGACCACGAA ACGCCGGCAAAACACTCTGGGAGTTCAGCTGGACGACAAACGCAAGGAGATGCTGAAGAG GCACCCGCTGTCCGTCATGCTGGACCTGAAATGCAAAGATGACAGTGTCCTGCACCTGAC TTTCTACTACCTCATGAACCTCAACATCATGACAGTAAAAGCCAAAGTGACAACCGCCAC AGAGCTGATCACCCCCATCAGTGCAGGTGACTTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 877-987, - strand, RNAz p=0.844925 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 877-987, - strand, RNAz p=0.844925 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 52-167, gnl|bosTau2|chr17 (39481048-39480933) | |
| 52-167, gnl|canFam2|chr26 (25810284-25810386) | |
| 52-167, gnl|danRer3|chrUn (28189556-28189454) | |
| 52-167, gnl|dasNov1|scaffold_496 (110983-111085) | |
| 52-167, gnl|echTel1|scaffold_316706 (9371-9283) | |
| 52-167, gnl|fr1|chrUn (1466671-1466773) | |
| 52-167, gnl|galGal2|chr15 (10976976-10976887) | |
| 52-167, gnl|hg17|chr22 (28263957-28264059) | |
| 52-167, gnl|Hg17|chr22 (28264086-28263971) | |
| 52-167, gnl|mm7|chr11 (4854218-4854117) | |
| 52-167, gnl|Mm7|chr11 (4854088-4854203) | |
| 52-167, gnl|monDom2|scaffold_89 (3288749-3288850) | |
| 52-167, gnl|oryCun1|scaffold_201587 (98101-98203) | |
| 52-167, gnl|panTro1|chr23 (28357053-28357155) | |
| 52-167, gnl|rheMac2|chr10 (73370061-73370163) | |
| 52-167, gnl|rn3|chr14 (85583829-85583728) | |
| 52-167, gnl|tetNig1|chr12 (6033671-6033773) | |
| 52-167, gnl|xenTro1|scaffold_207 (480455-480545) | |
| 257-412, gnl|bosTau2|chr17 (39477661-39477506) | |
| 257-412, gnl|canFam2|chr26 (25807698-25807883) | |
| 257-412, gnl|danRer3|chrUn (28193989-28193821) | |
| 257-412, gnl|dasNov1|scaffold_496 (106534-106719) | |
| 257-412, gnl|echTel1|scaffold_221860 (3368-3192) | |
| 257-412, gnl|fr1|chrUn (1465653-1465843) | |
| 257-412, gnl|galGal2|chr15 (10977860-10977705) | |
| 257-412, gnl|hg17|chr22 (28259872-28260057) | |
| 257-412, gnl|Hg17|chr22 (28260027-28259872) | |
| 257-412, gnl|loxAfr1|scaffold_13571 (101676-101491) | |
| 257-412, gnl|mm7|chr11 (4856247-4856062) | |
| 257-412, gnl|Mm7|chr11 (4856090-4856245) | |
| 257-412, gnl|monDom2|scaffold_89 (3287421-3287606) | |
| 257-412, gnl|oryCun1|scaffold_201587 (93812-93997) | |
| 257-412, gnl|panTro1|chr23 (28352906-28353091) | |
| 257-412, gnl|rheMac2|chr10 (73367971-73368156) | |
| 257-412, gnl|rn3|chr14 (85585983-85585797) | |
| 257-412, gnl|tetNig1|chr12 (6032897-6033058) | |
| 257-412, gnl|xenTro1|scaffold_207 (479039-479206) | |
| 522-664, gnl|bosTau2|chr17 (39474311-39474169) | |
| 522-664, gnl|canFam2|chr26 (25800374-25800577) | |
| 522-664, gnl|danRer3|chrUn (28195896-28195684) | |
| 522-664, gnl|dasNov1|scaffold_496 (99918-100123) | |
| 522-664, gnl|echTel1|scaffold_168513 (904-721) | |
| 522-664, gnl|fr1|chrUn (1465120-1465262) | |
| 522-664, gnl|galGal2|chr15 (10980553-10980373) | |
| 522-664, gnl|hg17|chr22 (28252329-28252530) | |
| 522-664, gnl|Hg17|chr22 (28252511-28252369) | |
| 522-664, gnl|loxAfr1|scaffold_2086 (99350-99551) | |
| 522-664, gnl|mm7|chr11 (4862808-4862608) | |
| 522-664, gnl|Mm7|chr11 (4862625-4862767) | |
| 522-664, gnl|monDom2|scaffold_89 (3282699-3282900) | |
| 522-664, gnl|oryCun1|scaffold_201587 (85788-85989) | |
| 522-664, gnl|panTro1|chr23 (28344724-28344925) | |
| 522-664, gnl|rheMac2|chr10 (73359727-73359928) | |
| 522-664, gnl|rn3|chr14 (85591799-85591602) | |
| 522-664, gnl|tetNig1|chr12 (6032445-6032621) | |
| 522-664, gnl|xenTro1|scaffold_207 (478037-478211) | |
| 877-987, gnl|bosTau2|chr17 (39469375-39469265) | |
| 877-987, gnl|canFam2|chr26 (25795735-25795871) | |
| 877-987, gnl|danRer3|chrUn (28201365-28201234) | |
| 877-987, gnl|dasNov1|scaffold_496 (95431-95568) | |
| 877-987, gnl|echTel1|scaffold_316706 (10169-10069) | |
| 877-987, gnl|fr1|chrUn (1464196-1464315) | |
| 877-987, gnl|galGal2|chr15 (10983033-10982902) | |
| 877-987, gnl|hg17|chr22 (28246378-28246513) | |
| 877-987, gnl|Hg17|chr22 (28246491-28246381) | |
| 877-987, gnl|loxAfr1|scaffold_2086 (94172-94307) | |
| 877-987, gnl|mm7|chr11 (4867605-4867467) | |
| 877-987, gnl|Mm7|chr11 (4867490-4867600) | |
| 877-987, gnl|monDom2|scaffold_89 (3280024-3280166) | |
| 877-987, gnl|oryCun1|scaffold_201587 (78507-78649) | |
| 877-987, gnl|panTro1|chr23 (28338766-28338901) | |
| 877-987, gnl|rheMac2|chr10 (73353843-73353978) | |
| 877-987, gnl|rn3|chr14 (85596671-85596537) | |
| 877-987, gnl|tetNig1|chr12 (6031724-6031853) | |
| 877-987, gnl|xenTro1|scaffold_207 (472393-472523) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 52-167, gnl|bosTau2|chr17 (39481048-39480933) | |
| 52-167, gnl|canFam2|chr26 (25810284-25810386) | |
| 52-167, gnl|danRer3|chrUn (28189556-28189454) | |
| 52-167, gnl|dasNov1|scaffold_496 (110983-111085) | |
| 52-167, gnl|echTel1|scaffold_316706 (9371-9283) | |
| 52-167, gnl|fr1|chrUn (1466671-1466773) | |
| 52-167, gnl|galGal2|chr15 (10976976-10976887) | |
| 52-167, gnl|hg17|chr22 (28263957-28264059) | |
| 52-167, gnl|Hg17|chr22 (28264086-28263971) | |
| 52-167, gnl|mm7|chr11 (4854218-4854117) | |
| 52-167, gnl|Mm7|chr11 (4854088-4854203) | |
| 52-167, gnl|monDom2|scaffold_89 (3288749-3288850) | |
| 52-167, gnl|oryCun1|scaffold_201587 (98101-98203) | |
| 52-167, gnl|panTro1|chr23 (28357053-28357155) | |
| 52-167, gnl|rheMac2|chr10 (73370061-73370163) | |
| 52-167, gnl|rn3|chr14 (85583829-85583728) | |
| 52-167, gnl|tetNig1|chr12 (6033671-6033773) | |
| 52-167, gnl|xenTro1|scaffold_207 (480455-480545) | |
| 257-412, gnl|bosTau2|chr17 (39477661-39477506) | |
| 257-412, gnl|canFam2|chr26 (25807698-25807883) | |
| 257-412, gnl|danRer3|chrUn (28193989-28193821) | |
| 257-412, gnl|dasNov1|scaffold_496 (106534-106719) | |
| 257-412, gnl|echTel1|scaffold_221860 (3368-3192) | |
| 257-412, gnl|fr1|chrUn (1465653-1465843) | |
| 257-412, gnl|galGal2|chr15 (10977860-10977705) | |
| 257-412, gnl|hg17|chr22 (28259872-28260057) | |
| 257-412, gnl|Hg17|chr22 (28260027-28259872) | |
| 257-412, gnl|loxAfr1|scaffold_13571 (101676-101491) | |
| 257-412, gnl|mm7|chr11 (4856247-4856062) | |
| 257-412, gnl|Mm7|chr11 (4856090-4856245) | |
| 257-412, gnl|monDom2|scaffold_89 (3287421-3287606) | |
| 257-412, gnl|oryCun1|scaffold_201587 (93812-93997) | |
| 257-412, gnl|panTro1|chr23 (28352906-28353091) | |
| 257-412, gnl|rheMac2|chr10 (73367971-73368156) | |
| 257-412, gnl|rn3|chr14 (85585983-85585797) | |
| 257-412, gnl|tetNig1|chr12 (6032897-6033058) | |
| 257-412, gnl|xenTro1|scaffold_207 (479039-479206) | |
| 522-664, gnl|bosTau2|chr17 (39474311-39474169) | |
| 522-664, gnl|canFam2|chr26 (25800374-25800577) | |
| 522-664, gnl|danRer3|chrUn (28195896-28195684) | |
| 522-664, gnl|dasNov1|scaffold_496 (99918-100123) | |
| 522-664, gnl|echTel1|scaffold_168513 (904-721) | |
| 522-664, gnl|fr1|chrUn (1465120-1465262) | |
| 522-664, gnl|galGal2|chr15 (10980553-10980373) | |
| 522-664, gnl|hg17|chr22 (28252329-28252530) | |
| 522-664, gnl|Hg17|chr22 (28252511-28252369) | |
| 522-664, gnl|loxAfr1|scaffold_2086 (99350-99551) | |
| 522-664, gnl|mm7|chr11 (4862808-4862608) | |
| 522-664, gnl|Mm7|chr11 (4862625-4862767) | |
| 522-664, gnl|monDom2|scaffold_89 (3282699-3282900) | |
| 522-664, gnl|oryCun1|scaffold_201587 (85788-85989) | |
| 522-664, gnl|panTro1|chr23 (28344724-28344925) | |
| 522-664, gnl|rheMac2|chr10 (73359727-73359928) | |
| 522-664, gnl|rn3|chr14 (85591799-85591602) | |
| 522-664, gnl|tetNig1|chr12 (6032445-6032621) | |
| 522-664, gnl|xenTro1|scaffold_207 (478037-478211) | |
| 877-987, gnl|bosTau2|chr17 (39469375-39469265) | |
| 877-987, gnl|canFam2|chr26 (25795735-25795871) | |
| 877-987, gnl|danRer3|chrUn (28201365-28201234) | |
| 877-987, gnl|dasNov1|scaffold_496 (95431-95568) | |
| 877-987, gnl|echTel1|scaffold_316706 (10169-10069) | |
| 877-987, gnl|fr1|chrUn (1464196-1464315) | |
| 877-987, gnl|galGal2|chr15 (10983033-10982902) | |
| 877-987, gnl|hg17|chr22 (28246378-28246513) | |
| 877-987, gnl|Hg17|chr22 (28246491-28246381) | |
| 877-987, gnl|loxAfr1|scaffold_2086 (94172-94307) | |
| 877-987, gnl|mm7|chr11 (4867605-4867467) | |
| 877-987, gnl|Mm7|chr11 (4867490-4867600) | |
| 877-987, gnl|monDom2|scaffold_89 (3280024-3280166) | |
| 877-987, gnl|oryCun1|scaffold_201587 (78507-78649) | |
| 877-987, gnl|panTro1|chr23 (28338766-28338901) | |
| 877-987, gnl|rheMac2|chr10 (73353843-73353978) | |
| 877-987, gnl|rn3|chr14 (85596671-85596537) | |
| 877-987, gnl|tetNig1|chr12 (6031724-6031853) | |
| 877-987, gnl|xenTro1|scaffold_207 (472393-472523) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cly (0.120642) | |
| cty (0.10408) |