Non-Coding RNA Search

Ss1.1-Thy1-THY010096H12.5

Sequence:


               
               TACAGAATCGTGCCTTTCCATCCTTAGCCATGATTTTGGTCAACAGCTTCCAGCTCTTGT
ATGTGGTGGACGCCCTCTGGAATGAGGAGGCGTTGCTGACCACCATGGACATCATCCACG
ATGGCTTCGGGTTCATGCTGGCCTTCGGGGATCTAGTGTGGGTGCCGTTTATCTACAGCT
TCCAAGCGTTTTACTTAGTCGCTCATCCCAATGAGCTGTCCTGGCCGGCGGCGTCTCTCA
TCGTGGCTCTGAAGCTGTGTGGATTTATCATCTTCCGATGTGCAAATTCTCAGAAAAATG
CATTCCGGAAAAATCCTAATGACCCAAAGCTTGCCCATTTAAAAACCATTCACACTTCAA
CGGGAAAAAACCTTCTCGTGTCTGGATGGTGGGGCTTTGTTCGCCACCCCAATTACCTGG
GTGACCTCATCATGGCCCTGGCATGGTCCCTCCCATGCGGTTTCAGCCACATTCTGCCTT
ACTTCTACGTGATTTACTTCACCGCGTTGCTGGTGCACCGAGAAGCCCGCGACGAGCACC
ACTGCAAGAGGAAGTACGGCCTGGCCTGGGAGAAGTACTGCCAGCGGGTCCCCTATCGCA
TCTTCCCGCACATCTACTGACCCTGCCCTCGCTGCTGCAGCGCACCTGCCGCTCTAGCTC
CCGCTCGCCAGGAAAGAAGAAAATCCCCGAGAACCTTCTCTTGTTGCACTGACAGCATCT
TGCCGTTTCCCTGTCTCTTTGAGGCAGGACTGTAGAGCCAGACAGTAAGTCTTCTAATGT
AGCCATGTTTATTTTTATTAAATATAACAATTAACATAAGGAACGTGTAGATAAAGACGT
TGGAATTGGCGTTCTGATCGGAAACGTTCAGTCCTTCAGTCTTCTAAACGCACTGAATAC
TATTGATGTTTATGGTTTTTGATTGCTTTTCAAATTTGGATTCTTTTGTCAGTTGGTTTT
TCTTAAATGAAAATGTTGTTACATTTTAAAAGTATATTTATGTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAGAATCGTGCCTTTCCATCCTTAGCCATGATTTTGGTCAACAGCTTCCAGCTCTTGT
ATGTGGTGGACGCCCTCTGGAATGAGGAGGCGTTGCTGACCACCATGGACATCATCCACG
ATGGCTTCGGGTTCATGCTGGCCTTCGGGGATCTAGTGTGGGTGCCGTTTATCTACAGCT
TCCAAGCGTTTTACTTAGTCGCTCATCCCAATGAGCTGTCCTGGCCGGCGGCGTCTCTCA
TCGTGGCTCTGAAGCTGTGTGGATTTATCATCTTCCGATGTGCAAATTCTCAGAAAAATG
CATTCCGGAAAAATCCTAATGACCCAAAGCTTGCCCATTTAAAAACCATTCACACTTCAA
CGGGAAAAAACCTTCTCGTGTCTGGATGGTGGGGCTTTGTTCGCCACCCCAATTACCTGG
GTGACCTCATCATGGCCCTGGCATGGTCCCTCCCATGCGGTTTCAGCCACATTCTGCCTT
ACTTCTACGTGATTTACTTCACCGCGTTGCTGGTGCACCGAGAAGCCCGCGACGAGCACC
ACTGCAAGAGGAAGTACGGCCTGGCCTGGGAGAAGTACTGCCAGCGGGTCCCCTATCGCA
TCTTCCCGCACATCTACTGACCCTGCCCTCGCTGCTGCAGCGCACCTGCCGCTCTAGCTC
CCGCTCGCCAGGAAAGAAGAAAATCCCCGAGAACCTTCTCTTGTTGCACTGACAGCATCT
TGCCGTTTCCCTGTCTCTTTGAGGCAGGACTGTAGAGCCAGACAGTAAGTCTTCTAATGT
AGCCATGTTTATTTTTATTAAATATAACAATTAACATAAGGAACGTGTAGATAAAGACGT
TGGAATTGGCGTTCTGATCGGAAACGTTCAGTCCTTCAGTCTTCTAAACGCACTGAATAC
TATTGATGTTTATGGTTTTTGATTGCTTTTCAAATTTGGATTCTTTTGTCAGTTGGTTTT
TCTTAAATGAAAATGTTGTTACATTTTAAAAGTATATTTATGTTTTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61817847|ref|XP_597675.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817847|ref|XP_597675.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               82-268, gnl|bosTau2|chr16 (16888785-16888970)
               

               
               82-268, gnl|Hg17|chr1 (221901275-221901089)
               

               
               82-268, gnl|Mm7|chr1 (181803008-181802823)
               


               
               459-1006, gnl|bosTau2|chr16 (16892206-16892770)
               

               
               459-1006, gnl|Hg17|chr1 (221897901-221897328)
               

               
               459-1006, gnl|Mm7|chr1 (181801014-181800538)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-268, gnl|bosTau2|chr16 (16888785-16888970)
               

               
               82-268, gnl|Hg17|chr1 (221901275-221901089)
               

               
               82-268, gnl|Mm7|chr1 (181803008-181802823)
               


               
               459-1006, gnl|bosTau2|chr16 (16892206-16892770)
               

               
               459-1006, gnl|Hg17|chr1 (221897901-221897328)
               

               
               459-1006, gnl|Mm7|chr1 (181801014-181800538)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (0.1755)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	82-268, gnl\|bosTau2\|chr16 (16888785-16888970)
	82-268, gnl\|Hg17\|chr1 (221901275-221901089)
	82-268, gnl\|Mm7\|chr1 (181803008-181802823)

	459-1006, gnl\|bosTau2\|chr16 (16892206-16892770)
	459-1006, gnl\|Hg17\|chr1 (221897901-221897328)
	459-1006, gnl\|Mm7\|chr1 (181801014-181800538)