Non-Coding RNA Search

Ss1.1-Thy1-THY010097F04.5

Sequence:


               
               TGTTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACGCGTCCCCCTCCCCT
CCGCCGCGCCCAGGTCTCTGCATTGCCCGACGCCGCAAGGGCGCGGGGGCGGCTCCTGCT
CCTCGCTGGACTCCTGAGGAGGCGTTTGTCAGAATGTCCACAGAAGGAGGATTTGGTGGT
ACTAGCAGCAGTGATGCCCAGCAAAGCTTGCAGTCCTTCTGGCCTCGTGTCATGGAAGAA
ATCCGGAATTTGACAGTGAAAGATTTCCGAGTACAGGAACTCCCACTGGCTCGTATTAAG
AAGATTATGAAACTGGATGAAGATGTGAAGATGATCAGTGCGGAAGCCCCCGTGCTCTTT
GCCAAGGCGGCCCAGATCTTTATCACGGAGCTGACTCTGCGAGCCTGGATCCACACGGAG
GACAACAAGCGCCGGACTCTCCAGAGGAATGATATCGCCATGGCAATTACAAAATTTGAT
CAGTTTGACTTTCTCATCGATATTGTCCCAAGAGATGAGCTGAAACCTCCAAAGCGTCAG
GAGGAGGTGCGCCAGTCCGTGACTCCTGCCGAGCCCGTCCAGTACTACTTCACGCTGGCT
CAGCAGCCCACTGCGGTCCAAGTCCAGGGGCAGCAGCAAGGCCAGCAGACCACCAGCTCC
ACGACCACCATCCAGCCTGGGCAGATCATCATTGCACAGCCTCAGCAGGGCCAGACCACA
CCCGTGACCATGCAGGTCGGAGAAGGTCAGCAGGTGCAGATCGTCCAGGCCCAGCCACAG
GGTCAGGCCCAGCAAGCCCAGAGCGGCACCGGGCAGGCCATGCAGGTGATGCAGCAGATC
ATCACCAACACAGGGGAGATCCAGCAGATCCCGGTGCAGCTGAATGCCGGCCAGCTACAG
TATATCCGCTTAGCCCAGCCTGTATCAGGCACCCAAGTTGTGCAGGGACAGATCCAGACG
CTTGCCACCAACGCTCAACAGATCACACAGACGGAGGTCCAGCAGGGACAGCAGCAGTTC
AGCCAGTTCACGGATGGACAGCAGCTCTACCAGATCCAGCAAGTCACCATGCCTGCCGGC
CAGGACCTCACCCAGCCCATGTTCATCCAGTCAGCCAGCCAGCCCTCCGACGGGCAGGCC
CCCCAGGTGACCGGCGACTGAGGCCTGAGCTGGCGAGGCCGAGGACACCCAACACAATTT
TTGCCACACAGCCCTGGGCGACGGGCCCCGCCTCCCTCCCCAGAGGACCCTGCCGACCTC
TGCGCCTCCTGCAGGCTCGGGCACTGGTGCACGACGCCCCGCGCCTGGGGGCCGAGATTC
TCCAGCAGAAAGATGCAATATTTTTTATTTCCTTCGTCCTCCCCCTTTTCTCCAAGGAAT
CAATATTTCAGTCTGTTGAGCTGTGTGTCCGATGCTATGAAATGAAAATATTAAATAACA
TATTTATGGCATTTTCTCAAAGATTGTGGTGGAAGAAATATTTCTTTTGTTTTTTTGGTC
CTTCAGCGCCGCTTCTTTTAGGAGCACATCTCCTCAGGGTGTGTAATCTCCCGACTCTTA
GGACATCGCTGCCCCGGGGGTTTGCCGCCTTGTCCTGCCCTCGGGTTAGGTTAGGCGACC
GTGTGTAGCTTCTTTTTCCCGTGCCCTGCTCTTGCCCCAGAGCTCTGTGGATTTGCCTCT
GGAAGCCATGGAAACATTCCTTGCGTTTAAGAGACGAACTCCTTCGCCATGGAGAGAGGA
TGGTTTCATTCCCAGACCCTTCGCTTCCGGGGACCCGAGGAGACTGGAACTTTGCGCACT
GGCCCCTTTCCCCCATTTTTACGCTTAAATACATCAAAAATTGTGCTCGTCTCCTTTGCT
GCATGGACTTCAAACTGCATGAAATGCAATAAACCTCACTTTAGATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACGCGTCCCCCTCCCCT
CCGCCGCGCCCAGGTCTCTGCATTGCCCGACGCCGCAAGGGCGCGGGGGCGGCTCCTGCT
CCTCGCTGGACTCCTGAGGAGGCGTTTGTCAGAATGTCCACAGAAGGAGGATTTGGTGGT
ACTAGCAGCAGTGATGCCCAGCAAAGCTTGCAGTCCTTCTGGCCTCGTGTCATGGAAGAA
ATCCGGAATTTGACAGTGAAAGATTTCCGAGTACAGGAACTCCCACTGGCTCGTATTAAG
AAGATTATGAAACTGGATGAAGATGTGAAGATGATCAGTGCGGAAGCCCCCGTGCTCTTT
GCCAAGGCGGCCCAGATCTTTATCACGGAGCTGACTCTGCGAGCCTGGATCCACACGGAG
GACAACAAGCGCCGGACTCTCCAGAGGAATGATATCGCCATGGCAATTACAAAATTTGAT
CAGTTTGACTTTCTCATCGATATTGTCCCAAGAGATGAGCTGAAACCTCCAAAGCGTCAG
GAGGAGGTGCGCCAGTCCGTGACTCCTGCCGAGCCCGTCCAGTACTACTTCACGCTGGCT
CAGCAGCCCACTGCGGTCCAAGTCCAGGGGCAGCAGCAAGGCCAGCAGACCACCAGCTCC
ACGACCACCATCCAGCCTGGGCAGATCATCATTGCACAGCCTCAGCAGGGCCAGACCACA
CCCGTGACCATGCAGGTCGGAGAAGGTCAGCAGGTGCAGATCGTCCAGGCCCAGCCACAG
GGTCAGGCCCAGCAAGCCCAGAGCGGCACCGGGCAGGCCATGCAGGTGATGCAGCAGATC
ATCACCAACACAGGGGAGATCCAGCAGATCCCGGTGCAGCTGAATGCCGGCCAGCTACAG
TATATCCGCTTAGCCCAGCCTGTATCAGGCACCCAAGTTGTGCAGGGACAGATCCAGACG
CTTGCCACCAACGCTCAACAGATCACACAGACGGAGGTCCAGCAGGGACAGCAGCAGTTC
AGCCAGTTCACGGATGGACAGCAGCTCTACCAGATCCAGCAAGTCACCATGCCTGCCGGC
CAGGACCTCACCCAGCCCATGTTCATCCAGTCAGCCAGCCAGCCCTCCGACGGGCAGGCC
CCCCAGGTGACCGGCGACTGAGGCCTGAGCTGGCGAGGCCGAGGACACCCAACACAATTT
TTGCCACACAGCCCTGGGCGACGGGCCCCGCCTCCCTCCCCAGAGGACCCTGCCGACCTC
TGCGCCTCCTGCAGGCTCGGGCACTGGTGCACGACGCCCCGCGCCTGGGGGCCGAGATTC
TCCAGCAGAAAGATGCAATATTTTTTATTTCCTTCGTCCTCCCCCTTTTCTCCAAGGAAT
CAATATTTCAGTCTGTTGAGCTGTGTGTCCGATGCTATGAAATGAAAATATTAAATAACA
TATTTATGGCATTTTCTCAAAGATTGTGGTGGAAGAAATATTTCTTTTGTTTTTTTGGTC
CTTCAGCGCCGCTTCTTTTAGGAGCACATCTCCTCAGGGTGTGTAATCTCCCGACTCTTA
GGACATCGCTGCCCCGGGGGTTTGCCGCCTTGTCCTGCCCTCGGGTTAGGTTAGGCGACC
GTGTGTAGCTTCTTTTTCCCGTGCCCTGCTCTTGCCCCAGAGCTCTGTGGATTTGCCTCT
GGAAGCCATGGAAACATTCCTTGCGTTTAAGAGACGAACTCCTTCGCCATGGAGAGAGGA
TGGTTTCATTCCCAGACCCTTCGCTTCCGGGGACCCGAGGAGACTGGAACTTTGCGCACT
GGCCCCTTTCCCCCATTTTTACGCTTAAATACATCAAAAATTGTGCTCGTCTCCTTTGCT
GCATGGACTTCAAACTGCATGAAATGCAATAAACCTCACTTTAGATAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5TZR6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TZR6_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1320-1917, gnl|bosTau2|chr14 (21545189-21544551)
               

               
               1320-1917, gnl|Hg17|chr1 (40905753-40906366)
               

               
               1320-1917, gnl|Mm7|chr12 (7816986-7817571)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1320-1917, gnl|bosTau2|chr14 (21545189-21544551)
               

               
               1320-1917, gnl|Hg17|chr1 (40905753-40906366)
               

               
               1320-1917, gnl|Mm7|chr12 (7816986-7817571)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               elu (0.770713)
               

               
               cag (0.453583)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               cag (0.453583)
               

               
               hlv (0.278513)
               

               
               eru (0.240096)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1320-1917, gnl\|bosTau2\|chr14 (21545189-21544551)
	1320-1917, gnl\|Hg17\|chr1 (40905753-40906366)
	1320-1917, gnl\|Mm7\|chr12 (7816986-7817571)

	elu (0.770713)
	cag (0.453583)
	hlv (0.278513)
	eru (0.240096)
	ecc (0.23007)
	fcc (0.197785)
	fbs (0.175346)
	lnt (0.142308)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	cly (0.120642)
	med (0.116252)
	spc (0.113366)
	eje (0.0988338)