Ss1.1-Thy1-THY010097G05.5.5
|
GACTGGTTTCGGGTCGCGGCAGTTACTCGTCGAATTTGGAAGCATGGAGCATGGCGTCGG
TAAGGTTGGCGGCCTGGGGCGCGCCCTGTGCGTGGTGACCGGGGCCTCCCGCGGTTTCGG
ACGGACGCTGGCACAGCTCCTGGCCCCGCTGCTGTCGCCTGGCTCCGTGTTGGTCCTAAC
CGCCCGCAACGACGAGGCGCTGCGGCACCTGGAGGCCGAGTTGGGCTCCGAGCGGCCTGA
CCTGCGCGTGGTGCGGGTGCCCGCTGATCTGGGCGCCGAGGCCGGCTTGCAGCAGTTGCT
GGGCGCGCTGCGCGAGCTCCCCAGACCCGAGGGCCTGCAGCGAGTGCTGCTCTTCAACAA
TGCGGCCTCTCTTGGAGATGTGTCCAAAAGCTTTGTGGACCTGACTGACTCAGCTGAAGT
GAACAGCTACTGGGCTCTGAACTTGACGTCCATGCTCTGCCTGACTTCCAGCTTCTTGAA
GGCTTTTCCTGACAGTCCTGGCCTCAGCAGAATGGTGGTTAACATCTCATCAATCTGTGC
TGTGAAGCCCTTCAAAGGCTGGGCCCTGTACTGTGCAGGGAAGGCTGCCCGTGACATGAT
ATATCAGGTTCTGGCTGCAGAGGACCCTAGTTTGAGAGTGCTGAGCTATGCCCCAGGTCC
CCTGGACACAGACATGCAGCAGATAGCCCGGGAGGCTTCCGTGGACCCAGATTTGCGAAA
AAGGCTGCAGGAGCTGAAGAGAAAGGGGGAACTTGTGGATTGCAAGGTATCAGCCCAGAA
ACTGCTGAACTTGCTGCAAAAGGATGAATTCAAGTCTGGAGCCCATGTCGACTTCTATAA
TTAATAAGCCCATGTGCTTGGCTTCCTGGGGCTTTCTTCCTCCCCTTTCAGGCACACCCA
GGAGCCCTCTAGATCCCCACATCCTGCCACAAGCCAGCCTTATGCAGATAAGCTTTCCTG
CTACTGTCCTGCTCTCAGATCCAGCCAGCAGCTATGAGGGCCTTGGGTAGAGGTCCCAGT
TCTCAGGAGTCGGTGTTGAGCACCCTGAGTGAGGAGGAGGCTTGAGAGAGACAAGTTAGG
GGTGTTGGTGTTTCTCTCTCCTGGGGAGTAGAATATTAGGGATGGGAAAAGCAGGACAAG
AAGCTGAAACACCGAGGAGAGGAAGTTGGGTCTCCTGCCCCTGGTCAGTCCCCAGGGAGG
AGGGGGAGCTTGTGTCAAAATGAAGATTCACAGTTGGTCTGGAGGGGAAGGAGGACAGCC
AAGTCCCAGCCCACAGGGATGCCTCCTGGACCTTCTCTTCAACTTTGTGTCCTCGTTCTG
CTGCTGCTTCTCTCCAGAACCTGCTGTCCATCCCCATCATGAGGAGAGGAGCCCTGAGAG
CTGAAGTACGTGTTAATGGTAGCTGCAAATAAAATGTAGGTTGTTGCTTTAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTGGTTTCGGGTCGCGGCAGTTACTCGTCGAATTTGGAAGCATGGAGCATGGCGTCGG
TAAGGTTGGCGGCCTGGGGCGCGCCCTGTGCGTGGTGACCGGGGCCTCCCGCGGTTTCGG
ACGGACGCTGGCACAGCTCCTGGCCCCGCTGCTGTCGCCTGGCTCCGTGTTGGTCCTAAC
CGCCCGCAACGACGAGGCGCTGCGGCACCTGGAGGCCGAGTTGGGCTCCGAGCGGCCTGA
CCTGCGCGTGGTGCGGGTGCCCGCTGATCTGGGCGCCGAGGCCGGCTTGCAGCAGTTGCT
GGGCGCGCTGCGCGAGCTCCCCAGACCCGAGGGCCTGCAGCGAGTGCTGCTCTTCAACAA
TGCGGCCTCTCTTGGAGATGTGTCCAAAAGCTTTGTGGACCTGACTGACTCAGCTGAAGT
GAACAGCTACTGGGCTCTGAACTTGACGTCCATGCTCTGCCTGACTTCCAGCTTCTTGAA
GGCTTTTCCTGACAGTCCTGGCCTCAGCAGAATGGTGGTTAACATCTCATCAATCTGTGC
TGTGAAGCCCTTCAAAGGCTGGGCCCTGTACTGTGCAGGGAAGGCTGCCCGTGACATGAT
ATATCAGGTTCTGGCTGCAGAGGACCCTAGTTTGAGAGTGCTGAGCTATGCCCCAGGTCC
CCTGGACACAGACATGCAGCAGATAGCCCGGGAGGCTTCCGTGGACCCAGATTTGCGAAA
AAGGCTGCAGGAGCTGAAGAGAAAGGGGGAACTTGTGGATTGCAAGGTATCAGCCCAGAA
ACTGCTGAACTTGCTGCAAAAGGATGAATTCAAGTCTGGAGCCCATGTCGACTTCTATAA
TTAATAAGCCCATGTGCTTGGCTTCCTGGGGCTTTCTTCCTCCCCTTTCAGGCACACCCA
GGAGCCCTCTAGATCCCCACATCCTGCCACAAGCCAGCCTTATGCAGATAAGCTTTCCTG
CTACTGTCCTGCTCTCAGATCCAGCCAGCAGCTATGAGGGCCTTGGGTAGAGGTCCCAGT
TCTCAGGAGTCGGTGTTGAGCACCCTGAGTGAGGAGGAGGCTTGAGAGAGACAAGTTAGG
GGTGTTGGTGTTTCTCTCTCCTGGGGAGTAGAATATTAGGGATGGGAAAAGCAGGACAAG
AAGCTGAAACACCGAGGAGAGGAAGTTGGGTCTCCTGCCCCTGGTCAGTCCCCAGGGAGG
AGGGGGAGCTTGTGTCAAAATGAAGATTCACAGTTGGTCTGGAGGGGAAGGAGGACAGCC
AAGTCCCAGCCCACAGGGATGCCTCCTGGACCTTCTCTTCAACTTTGTGTCCTCGTTCTG
CTGCTGCTTCTCTCCAGAACCTGCTGTCCATCCCCATCATGAGGAGAGGAGCCCTGAGAG
CTGAAGTACGTGTTAATGGTAGCTGCAAATAAAATGTAGGTTGTTGCTTTAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|62822194|gb|AAY14743.1| |
Protein identifier
|
gi|62822194|gb|AAY14743.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
38-365, gnl|bosTau2|chr11 (8558945-8559272) |
|
38-365, gnl|canFam2|chr17 (53030643-53030327) |
|
38-365, gnl|danRer3|chr5 (61464335-61464614) |
|
38-365, gnl|dasNov1|scaffold_152315 (522-834) |
|
38-365, gnl|echTel1|scaffold_278466 (5433-5731) |
|
38-365, gnl|fr1|chrUn (260762713-260762447) |
|
38-365, gnl|hg17|chr2 (73026193-73026490) |
|
38-365, gnl|Hg17|chr2 (73026204-73026520) |
|
38-365, gnl|loxAfr1|scaffold_11637 (8490-8802) |
|
38-365, gnl|mm7|chr6 (85167066-85166787) |
|
38-365, gnl|Mm7|chr6 (85184299-85184631) |
|
38-365, gnl|monDom2|scaffold_202 (301189-300890) |
|
38-365, gnl|oryCun1|scaffold_215301 (138-439) |
|
38-365, gnl|panTro1|chr12 (75432005-75432302) |
|
38-365, gnl|rheMac2|chr13 (73181824-73182121) |
|
38-365, gnl|rn3|chr4 (119613779-119613500) |
|
38-365, gnl|tetNig1|chrUn_random (159386444-159386712) |
| |
|
648-1424, gnl|bosTau2|chr11 (8566227-8567045) |
|
648-1424, gnl|Hg17|chr2 (73030122-73030936) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
38-365, gnl|bosTau2|chr11 (8558945-8559272) |
|
38-365, gnl|canFam2|chr17 (53030643-53030327) |
|
38-365, gnl|danRer3|chr5 (61464335-61464614) |
|
38-365, gnl|dasNov1|scaffold_152315 (522-834) |
|
38-365, gnl|echTel1|scaffold_278466 (5433-5731) |
|
38-365, gnl|fr1|chrUn (260762713-260762447) |
|
38-365, gnl|hg17|chr2 (73026193-73026490) |
|
38-365, gnl|Hg17|chr2 (73026204-73026520) |
|
38-365, gnl|loxAfr1|scaffold_11637 (8490-8802) |
|
38-365, gnl|mm7|chr6 (85167066-85166787) |
|
38-365, gnl|Mm7|chr6 (85184299-85184631) |
|
38-365, gnl|monDom2|scaffold_202 (301189-300890) |
|
38-365, gnl|oryCun1|scaffold_215301 (138-439) |
|
38-365, gnl|panTro1|chr12 (75432005-75432302) |
|
38-365, gnl|rheMac2|chr13 (73181824-73182121) |
|
38-365, gnl|rn3|chr4 (119613779-119613500) |
|
38-365, gnl|tetNig1|chrUn_random (159386444-159386712) |
| |
|
648-1424, gnl|bosTau2|chr11 (8566227-8567045) |
|
648-1424, gnl|Hg17|chr2 (73030122-73030936) |
|
cst (0.560146) |
|
cli (0.458435) |
|
ssp (0.406559) |
|
elu (0.385356) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
cga (0.279096) |
|
cov (0.264306) |
|
med (0.232504) |
|
ecc (0.23007) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
cje (0.165235) |
|
cki (0.165235) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
cst (0.560146) |
|
cli (0.458435) |
|
ssp (0.406559) |
|
elu (0.385356) |
|
eye (0.341006) |
|
fhi (0.339155) |
|
cga (0.279096) |
|
cov (0.264306) |
|
med (0.232504) |
|
ecc (0.23007) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
cje (0.165235) |
|
cki (0.165235) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |