Ss1.1-Thy1-THY010097G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGAACCGACCAGGCCTCAGCTACCACTATGCCCATTCCCACCTGGCTGAGGAGGAGG GCGAGGACAAGGAGGACTCGCAGCCACCCACCCCGGTTTCCCAGAGGTCTGAGGAGCAGA AATCCAAGAAGGGTCCCGATGGATTGGCCCTACCCAACAACTACTGTGACTTCTGCCTGG GGGACTCGAAGATCAACAAGAAGACAGGACAACCCGAGGAGCTGGTGTCCTGTTCTGACT GTGGCCGCTCAGGGCATCCGTCCTGCCTCCAGTTCACCCCTGTGATGATGGCAGCAGTGA AGACCTACCGCTGGCAGTGCATCGAGTGCAAGTGCTGCAACATCTGCGGCACCTCTGAGA ACGACGACCAGCTGCTCTTCTGTGATGACTGCGATCGTGGCTACCACATGTATTGTCTCA CCCCATCTATGTCTGAGCCTCCTGAGGGAAGTTGGAGCTGCCACTTGTGTCTGGACCTGC TGAAGGAGAAAGCTTCCATCTACCAGAATCAGAACTCCTCTTGATGTGGCCACCCCGACC CCCCATACATCTAGGGCTGTTTCTCTCCTCTGCTCTCGTTTTTCATACCCACCCTCCCTT CCTCCTCCCTTTCGCAAGCCCGGAGAACCTCGGGGTGGTCATGCCAACCTGCCTTTGGCA GCAGCAAGCTGAGGTGGCAGCTCTGACCGCCTCTGGCCCCAGGCCCTCAGGGAGAAGGGG GCAGCACACTGCCCCAAGGTGTACCTGTGGGCCCAGCCGCTCCCTGCTCTCCCTGAAATG CATTCACTCTCTCTGCCTTGGGCCCCAGCCCTGGTGATCTCGGAGTTCAGTGTCCTGTGA GAAAGAGTGGCAGAGCAGCTCACTTCTCTCTCAGCTCTGCCTCCACTCTGGTCCCCAGGG TTTTCCCTTCCCCTAAAGGTGAGCCAGGATGGGGCCTCTGCAGAGAGCAGCTGGGAATGA GAACTGAGCAGGCCGAGGTGGTGCTTGCGGGGAGCTTCCCATGCCCTTCGTGCTGCTTAA CCTCATCACCTCCTTCCCCCAGAGGGCTTTCTGGCTGGCTGTTCCTGCTACCCAGGAGCC AGGATGCTGGCTCTGCCCTGTTCCTGCCACCCCACCCCAGGGGTGTAGCAGCTTCCCCTG CTTCTTCCTCGAGCTCGCCTGGCTCACCCTCCCAGGCGGTCTCTAGTGACTGAAGCATTC CCTCCCTTGTGACTTTCTTTTACATCCCCGCCTAATTCCCTTCGGTTTTGTGGGGGGAGA GGGGAAGCATCAGGGGGCCAGGCCGGCAGCTTGGGGGGCCACAGGAAGGTGTTGGATAAT GTGCCTGTTTTTTAACTCGACGAAAAAGCCTACCTCCGCAATCCCCTTTTTGTTCTTCCT GGACCTGGGCCTTCAGCTCCTGCCCTTAACTGAATTGGAAGCCTCTGCCTCCTGCTTTGT GTGTCCTGGCTCCTGGGTTGTGGGGAAGCCACATAGACATCCCTTTCTTCCCTTGCACAC TCGCTTGCAGCTGGTACGATCTTCAAACCCTGATTCTTCAGTTTTCTGCCTGGTGACACT GACATTAAGTAGTTGGGGGGACAGTCCATGCCAGGACACCCTGGAGTGTCCTTCCCCCTT GGCTGTGGGCAGGCCCTAATTCACTCTCACTTTGGAGTTGAGGTGTCTTTTTTTTTTTTC TCCCTCTCCCTTCCTTCCTTTCCTTCTTTCCTTCTCTTTCTCTCTTTGGTTCCTGTATTC TGAGCATTAGTACAATAAACATTTTTACACGGAAAAAAAAAAAAAAGGGGGGGCCGTTTT AAATTTTCCTTGGGGGGGCCAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGAACCGACCAGGCCTCAGCTACCACTATGCCCATTCCCACCTGGCTGAGGAGGAGG GCGAGGACAAGGAGGACTCGCAGCCACCCACCCCGGTTTCCCAGAGGTCTGAGGAGCAGA AATCCAAGAAGGGTCCCGATGGATTGGCCCTACCCAACAACTACTGTGACTTCTGCCTGG GGGACTCGAAGATCAACAAGAAGACAGGACAACCCGAGGAGCTGGTGTCCTGTTCTGACT GTGGCCGCTCAGGGCATCCGTCCTGCCTCCAGTTCACCCCTGTGATGATGGCAGCAGTGA AGACCTACCGCTGGCAGTGCATCGAGTGCAAGTGCTGCAACATCTGCGGCACCTCTGAGA ACGACGACCAGCTGCTCTTCTGTGATGACTGCGATCGTGGCTACCACATGTATTGTCTCA CCCCATCTATGTCTGAGCCTCCTGAGGGAAGTTGGAGCTGCCACTTGTGTCTGGACCTGC TGAAGGAGAAAGCTTCCATCTACCAGAATCAGAACTCCTCTTGATGTGGCCACCCCGACC CCCCATACATCTAGGGCTGTTTCTCTCCTCTGCTCTCGTTTTTCATACCCACCCTCCCTT CCTCCTCCCTTTCGCAAGCCCGGAGAACCTCGGGGTGGTCATGCCAACCTGCCTTTGGCA GCAGCAAGCTGAGGTGGCAGCTCTGACCGCCTCTGGCCCCAGGCCCTCAGGGAGAAGGGG GCAGCACACTGCCCCAAGGTGTACCTGTGGGCCCAGCCGCTCCCTGCTCTCCCTGAAATG CATTCACTCTCTCTGCCTTGGGCCCCAGCCCTGGTGATCTCGGAGTTCAGTGTCCTGTGA GAAAGAGTGGCAGAGCAGCTCACTTCTCTCTCAGCTCTGCCTCCACTCTGGTCCCCAGGG TTTTCCCTTCCCCTAAAGGTGAGCCAGGATGGGGCCTCTGCAGAGAGCAGCTGGGAATGA GAACTGAGCAGGCCGAGGTGGTGCTTGCGGGGAGCTTCCCATGCCCTTCGTGCTGCTTAA CCTCATCACCTCCTTCCCCCAGAGGGCTTTCTGGCTGGCTGTTCCTGCTACCCAGGAGCC AGGATGCTGGCTCTGCCCTGTTCCTGCCACCCCACCCCAGGGGTGTAGCAGCTTCCCCTG CTTCTTCCTCGAGCTCGCCTGGCTCACCCTCCCAGGCGGTCTCTAGTGACTGAAGCATTC CCTCCCTTGTGACTTTCTTTTACATCCCCGCCTAATTCCCTTCGGTTTTGTGGGGGGAGA GGGGAAGCATCAGGGGGCCAGGCCGGCAGCTTGGGGGGCCACAGGAAGGTGTTGGATAAT GTGCCTGTTTTTTAACTCGACGAAAAAGCCTACCTCCGCAATCCCCTTTTTGTTCTTCCT GGACCTGGGCCTTCAGCTCCTGCCCTTAACTGAATTGGAAGCCTCTGCCTCCTGCTTTGT GTGTCCTGGCTCCTGGGTTGTGGGGAAGCCACATAGACATCCCTTTCTTCCCTTGCACAC TCGCTTGCAGCTGGTACGATCTTCAAACCCTGATTCTTCAGTTTTCTGCCTGGTGACACT GACATTAAGTAGTTGGGGGGACAGTCCATGCCAGGACACCCTGGAGTGTCCTTCCCCCTT GGCTGTGGGCAGGCCCTAATTCACTCTCACTTTGGAGTTGAGGTGTCTTTTTTTTTTTTC TCCCTCTCCCTTCCTTCCTTTCCTTCTTTCCTTCTCTTTCTCTCTTTGGTTCCTGTATTC TGAGCATTAGTACAATAAACATTTTTACACGGAAAAAAAAAAAAAAGGGGGGGCCGTTTT AAATTTTCCTTGGGGGGGCCAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 586-1681, - strand, RNAz p=0.997903 | |
| 1350-1468, - strand, RNAz p=0.635679 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 586-1681, - strand, RNAz p=0.997903 | |
| 1350-1468, - strand, RNAz p=0.635679 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 124-253, gnl|bosTau2|chr10 (51117499-51117370) | |
| 124-253, gnl|canFam2|chr8 (49120351-49120498) | |
| 124-253, gnl|danRer3|chr20 (37891265-37891409) | |
| 124-253, gnl|dasNov1|scaffold_224685 (3476-3345) | |
| 124-253, gnl|echTel1|scaffold_304747 (7691-7544) | |
| 124-253, gnl|fr1|chrUn (156747622-156747486) | |
| 124-253, gnl|galGal2|chr5 (23875962-23875821) | |
| 124-253, gnl|hg17|chr14 (72210697-72210844) | |
| 124-253, gnl|Hg17|chr14 (72210829-72210700) | |
| 124-253, gnl|loxAfr1|scaffold_35718 (4172-4025) | |
| 124-253, gnl|mm7|chr12 (81269622-81269769) | |
| 124-253, gnl|Mm7|chr12 (81269754-81269625) | |
| 124-253, gnl|monDom2|scaffold_8 (62735330-62735186) | |
| 124-253, gnl|oryCun1|scaffold_203405 (41904-41758) | |
| 124-253, gnl|panTro1|chr15 (71985505-71985652) | |
| 124-253, gnl|rheMac2|chr7 (135763544-135763691) | |
| 124-253, gnl|rn3|chr6 (107227373-107227520) | |
| 124-253, gnl|tetNig1|chr14 (6636856-6636998) | |
| 124-253, gnl|xenTro1|scaffold_218 (1443115-1443270) | |
| 432-1080, gnl|bosTau2|chr29 (34470315-34470939) | |
| 432-1080, gnl|Hg17|chr11 (64875712-64876347) | |
| 432-1080, gnl|Mm7|chr19 (5793454-5792833) | |
| 1087-1681, gnl|bosTau2|chr29 (34470976-34471576) | |
| 1087-1681, gnl|Hg17|chr11 (64876381-64876974) | |
| 1087-1681, gnl|Mm7|chr19 (5792800-5792241) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-253, gnl|bosTau2|chr10 (51117499-51117370) | |
| 124-253, gnl|canFam2|chr8 (49120351-49120498) | |
| 124-253, gnl|danRer3|chr20 (37891265-37891409) | |
| 124-253, gnl|dasNov1|scaffold_224685 (3476-3345) | |
| 124-253, gnl|echTel1|scaffold_304747 (7691-7544) | |
| 124-253, gnl|fr1|chrUn (156747622-156747486) | |
| 124-253, gnl|galGal2|chr5 (23875962-23875821) | |
| 124-253, gnl|hg17|chr14 (72210697-72210844) | |
| 124-253, gnl|Hg17|chr14 (72210829-72210700) | |
| 124-253, gnl|loxAfr1|scaffold_35718 (4172-4025) | |
| 124-253, gnl|mm7|chr12 (81269622-81269769) | |
| 124-253, gnl|Mm7|chr12 (81269754-81269625) | |
| 124-253, gnl|monDom2|scaffold_8 (62735330-62735186) | |
| 124-253, gnl|oryCun1|scaffold_203405 (41904-41758) | |
| 124-253, gnl|panTro1|chr15 (71985505-71985652) | |
| 124-253, gnl|rheMac2|chr7 (135763544-135763691) | |
| 124-253, gnl|rn3|chr6 (107227373-107227520) | |
| 124-253, gnl|tetNig1|chr14 (6636856-6636998) | |
| 124-253, gnl|xenTro1|scaffold_218 (1443115-1443270) | |
| 432-1080, gnl|bosTau2|chr29 (34470315-34470939) | |
| 432-1080, gnl|Hg17|chr11 (64875712-64876347) | |
| 432-1080, gnl|Mm7|chr19 (5793454-5792833) | |
| 1087-1681, gnl|bosTau2|chr29 (34470976-34471576) | |
| 1087-1681, gnl|Hg17|chr11 (64876381-64876974) | |
| 1087-1681, gnl|Mm7|chr19 (5792800-5792241) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| eye (0.511509) | |
| mas (0.42061) | |
| elu (0.385356) | |
| fty (0.351679) | |
| cag (0.302389) | |
| cov (0.264306) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.511509) | |
| mas (0.42061) | |
| elu (0.385356) | |
| fty (0.351679) | |
| cag (0.302389) | |
| cov (0.264306) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cty (0.10408) |