Ss1.1-Thy1-THY010098A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGTAGCAAAAACACCATGGCGAAGGCCGGGGATAAGAACGGCGGCGGTGGAAAGAAAG GCCTGAAACGCAAAGCCGCCACTTTAGAACCTCAGGAGGCTGCAGTCTCTGAGGATGGGA CGACGGAAAGTGGGGTGCAACCCACGACCGCGGCTGCCTTTCCCCCAGGCTTCAGCATTT CGGAGATTAAGAACAAACAGCGGAGACACTTAATGTTCACGCGGTGGAAACAGCAGCAGC GGAAGGAAAAGTTGGCAGCTAAGAAAAAACTTAAAAAAGAGAGAGAGGCTCTTGGTGATA AGGCTCCACCAAAGCCTGTACCCAAGACTATTGACAACCAGCGAGTGTATGATGAAACCA TAGTAGACCCTAACGATGAAGAGGTTGCTTATGATGAAGCTACGGATGAATTTGCTTCTT ACTTCAACAGACAGACTTGTCCCAAGATTCTCATCACTACATCAGATAGACCTCATGGGA GAACAGTACGACTCTGTGAACAGCTCTCCACAGTTATACCAAACTCACATGTTTATTACA GAAGAGGACTGGCTCTGAAAAAAATTATTCCACAGTGCATCTCAAGAGATTTCACAGACC TGATTGTGATTAATGAAGATCGTAAAATACCAAATGGATTAATTCTGAGTCATTTGCCAA ATGGCCCAACTGCACATTTTAAAATGAGCAGTGTTCGTCTGCGTAAAGAAATTAAGAGAA GAGGCAAGGACCCCACAGAACACACACCTGAAATAATTTTGAACAATTTTACAACACGGC TAGGTCATTCTATTGGACGTATGTTTGCATCTCTCTTTCCCCATAATCCTCAATTTATTG GAAGGCAGGTTGCCACATTCCACAATCAGCGGGATTATATCTTCTTCAGATTTCACAGAT ACATATTCAAGAGTGAAAAGAAAGTGGGAATTCAGGAACTTGGTCCACGTTTTACCTTAA AACTAAGATCTCTTCAGAAAGGAACCTTTGATTCTAAGTATGGAGAATATGAATGGGTCC ATAAGCCTCGGGAAATGGATACCAGTAGAAGAAAATTCCATTTATAAAGTACTGAGGGAA TTGTACTGTGCTGAACAGGCCTATCTTGAATTTATGAAAAAAAAAAGACCCTTTTCATTG AGAACGGCATTTACTGATTTCATAAATCTTTCATGTCTAGACAAGTGTCATGTGTTGCCA CTATTTATGTAGCAAATACAAATAAAAGCCATTTTGCCAAGTTTTTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGTAGCAAAAACACCATGGCGAAGGCCGGGGATAAGAACGGCGGCGGTGGAAAGAAAG GCCTGAAACGCAAAGCCGCCACTTTAGAACCTCAGGAGGCTGCAGTCTCTGAGGATGGGA CGACGGAAAGTGGGGTGCAACCCACGACCGCGGCTGCCTTTCCCCCAGGCTTCAGCATTT CGGAGATTAAGAACAAACAGCGGAGACACTTAATGTTCACGCGGTGGAAACAGCAGCAGC GGAAGGAAAAGTTGGCAGCTAAGAAAAAACTTAAAAAAGAGAGAGAGGCTCTTGGTGATA AGGCTCCACCAAAGCCTGTACCCAAGACTATTGACAACCAGCGAGTGTATGATGAAACCA TAGTAGACCCTAACGATGAAGAGGTTGCTTATGATGAAGCTACGGATGAATTTGCTTCTT ACTTCAACAGACAGACTTGTCCCAAGATTCTCATCACTACATCAGATAGACCTCATGGGA GAACAGTACGACTCTGTGAACAGCTCTCCACAGTTATACCAAACTCACATGTTTATTACA GAAGAGGACTGGCTCTGAAAAAAATTATTCCACAGTGCATCTCAAGAGATTTCACAGACC TGATTGTGATTAATGAAGATCGTAAAATACCAAATGGATTAATTCTGAGTCATTTGCCAA ATGGCCCAACTGCACATTTTAAAATGAGCAGTGTTCGTCTGCGTAAAGAAATTAAGAGAA GAGGCAAGGACCCCACAGAACACACACCTGAAATAATTTTGAACAATTTTACAACACGGC TAGGTCATTCTATTGGACGTATGTTTGCATCTCTCTTTCCCCATAATCCTCAATTTATTG GAAGGCAGGTTGCCACATTCCACAATCAGCGGGATTATATCTTCTTCAGATTTCACAGAT ACATATTCAAGAGTGAAAAGAAAGTGGGAATTCAGGAACTTGGTCCACGTTTTACCTTAA AACTAAGATCTCTTCAGAAAGGAACCTTTGATTCTAAGTATGGAGAATATGAATGGGTCC ATAAGCCTCGGGAAATGGATACCAGTAGAAGAAAATTCCATTTATAAAGTACTGAGGGAA TTGTACTGTGCTGAACAGGCCTATCTTGAATTTATGAAAAAAAAAAGACCCTTTTCATTG AGAACGGCATTTACTGATTTCATAAATCTTTCATGTCTAGACAAGTGTCATGTGTTGCCA CTATTTATGTAGCAAATACAAATAAAAGCCATTTTGCCAAGTTTTTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-159, + strand, RNAz p=0.999427 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-159, + strand, RNAz p=0.999427 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-246, gnl|bosTau2|chr3 (45136590-45136345) | |
| 1-246, gnl|Hg17|chr1 (84656971-84657214) | |
| 1-246, gnl|Mm7|chr3 (146419964-146419727) | |
| 479-633, gnl|bosTau2|chr3 (45125580-45125426) | |
| 479-633, gnl|canFam2|chr6 (66466203-66466042) | |
| 479-633, gnl|danRer3|chrNA (218103776-218103615) | |
| 479-633, gnl|dasNov1|scaffold_34993 (18164-18003) | |
| 479-633, gnl|echTel1|scaffold_204041 (907-1054) | |
| 479-633, gnl|fr1|chrUn (100373818-100373979) | |
| 479-633, gnl|galGal2|chr8 (16914186-16914025) | |
| 479-633, gnl|hg17|chr1 (84668022-84668183) | |
| 479-633, gnl|Hg17|chr1 (84668022-84668176) | |
| 479-633, gnl|loxAfr1|scaffold_7745 (39713-39874) | |
| 479-633, gnl|mm7|chr3 (146410857-146410696) | |
| 479-633, gnl|Mm7|chr3 (146410855-146410701) | |
| 479-633, gnl|monDom2|scaffold_16 (3092391-3092230) | |
| 479-633, gnl|oryCun1|scaffold_185121 (7591-7752) | |
| 479-633, gnl|panTro1|chr1 (83338741-83338902) | |
| 479-633, gnl|rheMac2|chr1 (87282068-87282229) | |
| 479-633, gnl|rn3|chr2 (244703802-244703641) | |
| 479-633, gnl|tetNig1|chr1 (12017609-12017448) | |
| 479-633, gnl|xenTro1|scaffold_513 (465816-465655) | |
| 715-898, gnl|bosTau2|chr3 (45121443-45121260) | |
| 715-898, gnl|Hg17|chr1 (84673584-84673767) | |
| 715-898, gnl|Mm7|chr3 (146406256-146406073) | |
| 1024-1222, gnl|bosTau2|chr3 (45120411-45120211) | |
| 1024-1222, gnl|Hg17|chr1 (84675131-84675351) | |
| 1024-1222, gnl|Mm7|chr3 (146405136-146404927) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-246, gnl|bosTau2|chr3 (45136590-45136345) | |
| 1-246, gnl|Hg17|chr1 (84656971-84657214) | |
| 1-246, gnl|Mm7|chr3 (146419964-146419727) | |
| 479-633, gnl|bosTau2|chr3 (45125580-45125426) | |
| 479-633, gnl|canFam2|chr6 (66466203-66466042) | |
| 479-633, gnl|danRer3|chrNA (218103776-218103615) | |
| 479-633, gnl|dasNov1|scaffold_34993 (18164-18003) | |
| 479-633, gnl|echTel1|scaffold_204041 (907-1054) | |
| 479-633, gnl|fr1|chrUn (100373818-100373979) | |
| 479-633, gnl|galGal2|chr8 (16914186-16914025) | |
| 479-633, gnl|hg17|chr1 (84668022-84668183) | |
| 479-633, gnl|Hg17|chr1 (84668022-84668176) | |
| 479-633, gnl|loxAfr1|scaffold_7745 (39713-39874) | |
| 479-633, gnl|mm7|chr3 (146410857-146410696) | |
| 479-633, gnl|Mm7|chr3 (146410855-146410701) | |
| 479-633, gnl|monDom2|scaffold_16 (3092391-3092230) | |
| 479-633, gnl|oryCun1|scaffold_185121 (7591-7752) | |
| 479-633, gnl|panTro1|chr1 (83338741-83338902) | |
| 479-633, gnl|rheMac2|chr1 (87282068-87282229) | |
| 479-633, gnl|rn3|chr2 (244703802-244703641) | |
| 479-633, gnl|tetNig1|chr1 (12017609-12017448) | |
| 479-633, gnl|xenTro1|scaffold_513 (465816-465655) | |
| 715-898, gnl|bosTau2|chr3 (45121443-45121260) | |
| 715-898, gnl|Hg17|chr1 (84673584-84673767) | |
| 715-898, gnl|Mm7|chr3 (146406256-146406073) | |
| 1024-1222, gnl|bosTau2|chr3 (45120411-45120211) | |
| 1024-1222, gnl|Hg17|chr1 (84675131-84675351) | |
| 1024-1222, gnl|Mm7|chr3 (146405136-146404927) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| ova (0.774793) | |
| rec (0.519211) | |
| pro (0.512033) | |
| isp (0.451128) | |
| nms (0.427716) | |
| kid (0.389206) | |
| thg (0.380373) | |
| bla (0.373042) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.774793) | |
| rec (0.519211) | |
| pro (0.512033) | |
| isp (0.451128) | |
| nms (0.427716) | |
| kid (0.389206) | |
| thg (0.380373) | |
| bla (0.373042) | |
| bfe (0.299715) | |
| eje (0.296501) | |
| spl (0.286369) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |