Ss1.1-Thy1-THY010098C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGGTGCGGAGCTTAAACCCCCCTGCCCAGAAGCATTGGGGGAGAGCTAGGTGCAGAG CTGCAGGCTGAGGCTCTGCTGAGAGGGCCTCACCCCCAACCCCGCTGCCAGCTGCACCCC ATCCCTGGACCACCCCCCGCTAAGAAGGACGGGAGCCCAGTCGGCAAAGCCCACGGCTCA GTCATGAGAACACAAATTGAAGTGATCCCCTGCAAAATCTGTGGGGACAAGTCGTCTGGG ATCCACTACGGGGTTATCACCTGTGAGGGGTGCAAGGGTTTCTTCCGCCGGAGCCAGCAG TGTAACGTGGCCTACTCCTGCACCCGTCAGCAGAACTGCCCCATCGACCGCACTAGCCGA AACCGATGCCAGCACTGCCGCCTACAGAAATGCCTGGCCCTGGGCATGTCCCGAGATGCT GTCAAGTTTGGCCGCATGTCCAAGAAGCAAAGGGACAGCCTGCATGCTGAGGTGCAGAAA CAGCTGCAGCAGAGGCAACAGCAGCAACGGGAACAAGCGGCCAAGTCCCCTCCTGCAGGG GCCCAAGGAGCAGACCCCCTCGCCTGCCCCCTGGGGCTCCCAGATGGGCAGCTGCCCCTG GGCTCCTCACCTGACCTGCCGGAGGCCTCGGCCTGTCCCCCCGGTCTCCTGAGAGCCCCA AGCTGCGGGCCCTCCTACTCCAACAGCTTGGTCAAGGCTGGGCTCAATGGGGCTTCTTAC CACCTGGAATACAGCCCTGAGCGGGGCAAGGCTGAGGGCAGAGAGAACTTCTATGGCACA GGCAGCCAGCTGGCCCCCGACAGGTGTGGACTCCGTTTTGAGGACCCCAGGCATCCTGGG CTTGGGGAACCAGGACGGGGCCCTGACAGCTACTGCAGCCCCAGTTTCCGCAGTACCCCA GAGGCACCTTACGCCTCCCTGACAGAGATTGAGCACCTGGTGCAGAATGTTTGTAAGTCT TACCGAGACACGTGTCAGCTGCGGCTGGAGGACCTGCTTCGGCAGCGCTCCAACATCTTC TCCCGAGAGGAGGTGGCCGGCTACCAGAGGAAGTCAATGTGGGAGATGTGGGAACGCTGT GCCCACCGCCTCACCGAGGCCATTCAGTACGTGGTGGAGTTCGCTAAGAGGCTCTCGGGC TTTATGGAGCTCTGCCAGAACGACCAGATCGTGCTACTCAAAGCAGGAGCAATGGAAGTG GTGCTGGTCAGGATGTGCCGAGCCTACAACGCTGACAACCACACAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGGTGCGGAGCTTAAACCCCCCTGCCCAGAAGCATTGGGGGAGAGCTAGGTGCAGAG CTGCAGGCTGAGGCTCTGCTGAGAGGGCCTCACCCCCAACCCCGCTGCCAGCTGCACCCC ATCCCTGGACCACCCCCCGCTAAGAAGGACGGGAGCCCAGTCGGCAAAGCCCACGGCTCA GTCATGAGAACACAAATTGAAGTGATCCCCTGCAAAATCTGTGGGGACAAGTCGTCTGGG ATCCACTACGGGGTTATCACCTGTGAGGGGTGCAAGGGTTTCTTCCGCCGGAGCCAGCAG TGTAACGTGGCCTACTCCTGCACCCGTCAGCAGAACTGCCCCATCGACCGCACTAGCCGA AACCGATGCCAGCACTGCCGCCTACAGAAATGCCTGGCCCTGGGCATGTCCCGAGATGCT GTCAAGTTTGGCCGCATGTCCAAGAAGCAAAGGGACAGCCTGCATGCTGAGGTGCAGAAA CAGCTGCAGCAGAGGCAACAGCAGCAACGGGAACAAGCGGCCAAGTCCCCTCCTGCAGGG GCCCAAGGAGCAGACCCCCTCGCCTGCCCCCTGGGGCTCCCAGATGGGCAGCTGCCCCTG GGCTCCTCACCTGACCTGCCGGAGGCCTCGGCCTGTCCCCCCGGTCTCCTGAGAGCCCCA AGCTGCGGGCCCTCCTACTCCAACAGCTTGGTCAAGGCTGGGCTCAATGGGGCTTCTTAC CACCTGGAATACAGCCCTGAGCGGGGCAAGGCTGAGGGCAGAGAGAACTTCTATGGCACA GGCAGCCAGCTGGCCCCCGACAGGTGTGGACTCCGTTTTGAGGACCCCAGGCATCCTGGG CTTGGGGAACCAGGACGGGGCCCTGACAGCTACTGCAGCCCCAGTTTCCGCAGTACCCCA GAGGCACCTTACGCCTCCCTGACAGAGATTGAGCACCTGGTGCAGAATGTTTGTAAGTCT TACCGAGACACGTGTCAGCTGCGGCTGGAGGACCTGCTTCGGCAGCGCTCCAACATCTTC TCCCGAGAGGAGGTGGCCGGCTACCAGAGGAAGTCAATGTGGGAGATGTGGGAACGCTGT GCCCACCGCCTCACCGAGGCCATTCAGTACGTGGTGGAGTTCGCTAAGAGGCTCTCGGGC TTTATGGAGCTCTGCCAGAACGACCAGATCGTGCTACTCAAAGCAGGAGCAATGGAAGTG GTGCTGGTCAGGATGTGCCGAGCCTACAACGCTGACAACCACACAGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-107, - strand, RNAz p=0.737474 | |
| 66-169, - strand, RNAz p=0.983822 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-107, - strand, RNAz p=0.737474 | |
| 66-169, - strand, RNAz p=0.983822 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001001523, - |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-190, gnl|bosTau2|chr3 (15014632-15014833) | |
| 1-190, gnl|canFam2|chr17 (63915238-63915503) | |
| 1-190, gnl|dasNov1|scaffold_3934 (98427-98662) | |
| 1-190, gnl|echTel1|scaffold_92585 (1050-1325) | |
| 1-190, gnl|hg17|chr1 (148611465-148611723) | |
| 1-190, gnl|loxAfr1|scaffold_131319 (624-356) | |
| 1-190, gnl|mm7|chr3 (94251568-94251333) | |
| 1-190, gnl|monDom2|scaffold_44 (5148725-5148973) | |
| 1-190, gnl|oryCun1|scaffold_194482 (25481-25726) | |
| 1-190, gnl|panTro1|chr1 (130365556-130365814) | |
| 1-190, gnl|rheMac2|chr1 (130275074-130275330) | |
| 1-190, gnl|rn3|chr2 (189299989-189299743) | |
| 275-421, gnl|bosTau2|chr10 (36865508-36865654) | |
| 275-421, gnl|canFam2|chr30 (28333792-28333968) | |
| 275-421, gnl|danRer3|chr25 (27069723-27069572) | |
| 275-421, gnl|dasNov1|scaffold_97215 (1440-1264) | |
| 275-421, gnl|echTel1|scaffold_308470 (29433-29609) | |
| 275-421, gnl|fr1|chrUn (78926306-78926462) | |
| 275-421, gnl|galGal2|chr10 (5806430-5806254) | |
| 275-421, gnl|hg17|chr15 (58594099-58594275) | |
| 275-421, gnl|Hg17|chr15 (58594250-58594104) | |
| 275-421, gnl|loxAfr1|scaffold_2215 (42724-42900) | |
| 275-421, gnl|mm7|chr9 (69394022-69393846) | |
| 275-421, gnl|Mm7|chr9 (69393868-69394014) | |
| 275-421, gnl|monDom2|scaffold_12 (54084728-54084551) | |
| 275-421, gnl|oryCun1|scaffold_209524 (834-1010) | |
| 275-421, gnl|panTro1|chr16 (59018920-59019096) | |
| 275-421, gnl|rheMac2|chr7 (38934496-38934672) | |
| 275-421, gnl|rn3|chr8 (73819031-73818855) | |
| 275-421, gnl|tetNig1|chr13 (7114427-7114275) | |
| 275-421, gnl|xenTro1|scaffold_287 (804637-804811) | |
| 1052-1207, gnl|bosTau2|chr3 (15027550-15027705) | |
| 1052-1207, gnl|Hg17|chr1 (148599171-148599015) | |
| 1052-1207, gnl|Mm7|chr3 (94265021-94265173) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-190, gnl|bosTau2|chr3 (15014632-15014833) | |
| 1-190, gnl|canFam2|chr17 (63915238-63915503) | |
| 1-190, gnl|dasNov1|scaffold_3934 (98427-98662) | |
| 1-190, gnl|echTel1|scaffold_92585 (1050-1325) | |
| 1-190, gnl|hg17|chr1 (148611465-148611723) | |
| 1-190, gnl|loxAfr1|scaffold_131319 (624-356) | |
| 1-190, gnl|mm7|chr3 (94251568-94251333) | |
| 1-190, gnl|monDom2|scaffold_44 (5148725-5148973) | |
| 1-190, gnl|oryCun1|scaffold_194482 (25481-25726) | |
| 1-190, gnl|panTro1|chr1 (130365556-130365814) | |
| 1-190, gnl|rheMac2|chr1 (130275074-130275330) | |
| 1-190, gnl|rn3|chr2 (189299989-189299743) | |
| 275-421, gnl|bosTau2|chr10 (36865508-36865654) | |
| 275-421, gnl|canFam2|chr30 (28333792-28333968) | |
| 275-421, gnl|danRer3|chr25 (27069723-27069572) | |
| 275-421, gnl|dasNov1|scaffold_97215 (1440-1264) | |
| 275-421, gnl|echTel1|scaffold_308470 (29433-29609) | |
| 275-421, gnl|fr1|chrUn (78926306-78926462) | |
| 275-421, gnl|galGal2|chr10 (5806430-5806254) | |
| 275-421, gnl|hg17|chr15 (58594099-58594275) | |
| 275-421, gnl|Hg17|chr15 (58594250-58594104) | |
| 275-421, gnl|loxAfr1|scaffold_2215 (42724-42900) | |
| 275-421, gnl|mm7|chr9 (69394022-69393846) | |
| 275-421, gnl|Mm7|chr9 (69393868-69394014) | |
| 275-421, gnl|monDom2|scaffold_12 (54084728-54084551) | |
| 275-421, gnl|oryCun1|scaffold_209524 (834-1010) | |
| 275-421, gnl|panTro1|chr16 (59018920-59019096) | |
| 275-421, gnl|rheMac2|chr7 (38934496-38934672) | |
| 275-421, gnl|rn3|chr8 (73819031-73818855) | |
| 275-421, gnl|tetNig1|chr13 (7114427-7114275) | |
| 275-421, gnl|xenTro1|scaffold_287 (804637-804811) | |
| 1052-1207, gnl|bosTau2|chr3 (15027550-15027705) | |
| 1052-1207, gnl|Hg17|chr1 (148599171-148599015) | |
| 1052-1207, gnl|Mm7|chr3 (94265021-94265173) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| cty (0.10408) |