Non-Coding RNA Search

Ss1.1-Thy1-THY010098G02.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAAATAAAAACGTTTTATTGAAGTATAGTTGATCTGTAATGTT
GTGATAATTTCTGCTGTACAATGAAGTGATTCAGTTATCCATGCACACAAATCCATTCTT
TTTCAGATTCTTTCCCCACACAGATGATCACAGAATTTTGGGTAGAGTTCCCTGTGCTTT
ACAGCAGGTTCCCATTGGCCAGTGAGTCCATCTACCGCAGTGTACACATGCCAAGCCCAA
ACTCCCAGTCCATCCTTCCCCCCTCCACCTGTCCGCTCTGGTAACCATAAGTTTGTTTCA
AACTGTCCTTCCCCACATGTCACAGAACCACTGCTGCGTTCAGACCCACCACACCCAGCA
CGTACCTGAAAAGTCACCGTGCCTGCTTCCTTTATGGGCGAGGACACAGCCCAGGAGATG
CAGAGCTGCCTGGTCGACATCCCACACTGATTTGCTACCTCGGCTTTTCACCAGTGAGCC
CAATGGCCCGGATGCTGCGGGGGTTACATGGGAGAATGAGGCACAGGCCTGCCCTCAGGA
AGCTTTTGCTCTACGTGTGTTCTACTAGAGGCCTGGAAAGCCTGAGGATGGCGAGGCACA
GAGGAGGGAGGGTGTTCTGGAAGAGGGGATGATGGGCCTGGGAACTCCGGAGCCTGGCAT
GGGCAGTGGCCCGTGAGCTGGCGAGAGCAGGTGAGGGCTTGGAAGTGGGACTCAGTTGGA
GGGAGGCTGGTGGGAAGCACTGAAAGCCAGCGCATCTCAAATGGGTGCCTCTTAGGAGCT
GTGTGTGAGCTCCCTCAAGTCTCCTGGATCTGCAGAGTGTCTACAGCCAGGACTCCTGGC
TGAGTCCTGCCTCGCAGCCCCACCCCTGGTGGAGCTGCCCCTCGCCCGCTTGCTGGAGCA
GCACATTCCACGGGGAGTAATGGCAAGCCTGGTTGCTGTAATAATGTCCCTCGTTTTCCC
ACAGGATGCTTTCGATTTGCTGCATGAGCTCCTCCAGCTGGGCTTCCTGCTCCGCCCCCT
CCACCTTGTTGTTGAAGCCGCAGTGGCGCCGCTCGCAGATCACGTCCAGCTGGGCCAGCT
CCCGGTTGTCCGTCTCTCGCAGGTACTCTTCCAGGGAGCCGCCCCCCAGGTCTTCCTTCC
GTGTGAACACCAGGATGGTGTGGGCCAGGACGCCCACCCCAAACACTTCCTGGAGGCGCC
TGACCACCTCTTGATCCTCCTGCGTGAAGCGGCCCAGCTGTGTCACCAGGAGGACGGCGT
GGGGCCCGGGGAAGGAGAAGGCAATGGCTCGGCTGAAGCCCTGGGCGGCCACGCCCGGCG
CCACCCGAGGGGACAGGATGTCAGGGGTGTCTATGACCTCGAGCTCCCTCCCAGCCCACA
CCCGACACCCCCGCTGGAAGTCCTGGGTCACCGGTCTGGAACTGAGCTTGCACTTGAACA
GCTTCCGGCCGAGGATGCTGTTTCCTGTTGCGCTTTTCCCACTTCCGGGTTTTCCCACCA
GCAGGAGCCTCAGCTTCCGCGGGGTCCGTTCATCCGCCCTCAGACCTCCTGATCTGTCTT
GGGTGGGCTCCTGAGACAGCCCTTCTTTGAAATTCTCCTGGACAATCAGTTCGCATTCTT
CTTCCTCTGTCCCTCCTGTTGGGCAGAAGAAAAGGCTGCGTTTTGCGTCTCCTGGGGCCA
GGTCGTCTCGTGAATTCTTTGTTTCTCCTTTCAGAGCGGACACCTTGCAGGCCTGGGGGG
GCCTTGAGTGGAAAGGGTAGAATAAAATGTCCCAGAAGTTTGAATAGATATAGGACATCG
TTTATATTTTTTTTAGCAAAATGTGATCCCAAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAAATAAAAACGTTTTATTGAAGTATAGTTGATCTGTAATGTT
GTGATAATTTCTGCTGTACAATGAAGTGATTCAGTTATCCATGCACACAAATCCATTCTT
TTTCAGATTCTTTCCCCACACAGATGATCACAGAATTTTGGGTAGAGTTCCCTGTGCTTT
ACAGCAGGTTCCCATTGGCCAGTGAGTCCATCTACCGCAGTGTACACATGCCAAGCCCAA
ACTCCCAGTCCATCCTTCCCCCCTCCACCTGTCCGCTCTGGTAACCATAAGTTTGTTTCA
AACTGTCCTTCCCCACATGTCACAGAACCACTGCTGCGTTCAGACCCACCACACCCAGCA
CGTACCTGAAAAGTCACCGTGCCTGCTTCCTTTATGGGCGAGGACACAGCCCAGGAGATG
CAGAGCTGCCTGGTCGACATCCCACACTGATTTGCTACCTCGGCTTTTCACCAGTGAGCC
CAATGGCCCGGATGCTGCGGGGGTTACATGGGAGAATGAGGCACAGGCCTGCCCTCAGGA
AGCTTTTGCTCTACGTGTGTTCTACTAGAGGCCTGGAAAGCCTGAGGATGGCGAGGCACA
GAGGAGGGAGGGTGTTCTGGAAGAGGGGATGATGGGCCTGGGAACTCCGGAGCCTGGCAT
GGGCAGTGGCCCGTGAGCTGGCGAGAGCAGGTGAGGGCTTGGAAGTGGGACTCAGTTGGA
GGGAGGCTGGTGGGAAGCACTGAAAGCCAGCGCATCTCAAATGGGTGCCTCTTAGGAGCT
GTGTGTGAGCTCCCTCAAGTCTCCTGGATCTGCAGAGTGTCTACAGCCAGGACTCCTGGC
TGAGTCCTGCCTCGCAGCCCCACCCCTGGTGGAGCTGCCCCTCGCCCGCTTGCTGGAGCA
GCACATTCCACGGGGAGTAATGGCAAGCCTGGTTGCTGTAATAATGTCCCTCGTTTTCCC
ACAGGATGCTTTCGATTTGCTGCATGAGCTCCTCCAGCTGGGCTTCCTGCTCCGCCCCCT
CCACCTTGTTGTTGAAGCCGCAGTGGCGCCGCTCGCAGATCACGTCCAGCTGGGCCAGCT
CCCGGTTGTCCGTCTCTCGCAGGTACTCTTCCAGGGAGCCGCCCCCCAGGTCTTCCTTCC
GTGTGAACACCAGGATGGTGTGGGCCAGGACGCCCACCCCAAACACTTCCTGGAGGCGCC
TGACCACCTCTTGATCCTCCTGCGTGAAGCGGCCCAGCTGTGTCACCAGGAGGACGGCGT
GGGGCCCGGGGAAGGAGAAGGCAATGGCTCGGCTGAAGCCCTGGGCGGCCACGCCCGGCG
CCACCCGAGGGGACAGGATGTCAGGGGTGTCTATGACCTCGAGCTCCCTCCCAGCCCACA
CCCGACACCCCCGCTGGAAGTCCTGGGTCACCGGTCTGGAACTGAGCTTGCACTTGAACA
GCTTCCGGCCGAGGATGCTGTTTCCTGTTGCGCTTTTCCCACTTCCGGGTTTTCCCACCA
GCAGGAGCCTCAGCTTCCGCGGGGTCCGTTCATCCGCCCTCAGACCTCCTGATCTGTCTT
GGGTGGGCTCCTGAGACAGCCCTTCTTTGAAATTCTCCTGGACAATCAGTTCGCATTCTT
CTTCCTCTGTCCCTCCTGTTGGGCAGAAGAAAAGGCTGCGTTTTGCGTCTCCTGGGGCCA
GGTCGTCTCGTGAATTCTTTGTTTCTCCTTTCAGAGCGGACACCTTGCAGGCCTGGGGGG
GCCTTGAGTGGAAAGGGTAGAATAAAATGTCCCAGAAGTTTGAATAGATATAGGACATCG
TTTATATTTTTTTTAGCAAAATGTGATCCCAAAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51105899|gb|EAL24483.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51105899|gb|EAL24483.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-298, gnl|bosTau2|chr10 (15868459-15868164)
               


               
               30-294, gnl|bosTau2|chr10 (16598866-16598601)
               


               
               369-654, gnl|bosTau2|chr11 (67764631-67764332)
               

               
               369-654, gnl|Hg17|chr7 (149761931-149762306)
               


               
               964-1547, gnl|bosTau2|chr11 (67764009-67763420)
               

               
               964-1547, gnl|Hg17|chr7 (149762673-149763250)
               

               
               964-1547, gnl|Mm7|chr6 (48662299-48662875)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-298, gnl|bosTau2|chr10 (15868459-15868164)
               


               
               30-294, gnl|bosTau2|chr10 (16598866-16598601)
               


               
               369-654, gnl|bosTau2|chr11 (67764631-67764332)
               

               
               369-654, gnl|Hg17|chr7 (149761931-149762306)
               


               
               964-1547, gnl|bosTau2|chr11 (67764009-67763420)
               

               
               964-1547, gnl|Hg17|chr7 (149762673-149763250)
               

               
               964-1547, gnl|Mm7|chr6 (48662299-48662875)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cje (0.660939)
               

               
               cag (0.453583)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.660939)
               

               
               cag (0.453583)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               cbl (0.114797)

	1-298, gnl\|bosTau2\|chr10 (15868459-15868164)

	30-294, gnl\|bosTau2\|chr10 (16598866-16598601)

	369-654, gnl\|bosTau2\|chr11 (67764631-67764332)
	369-654, gnl\|Hg17\|chr7 (149761931-149762306)

	964-1547, gnl\|bosTau2\|chr11 (67764009-67763420)
	964-1547, gnl\|Hg17\|chr7 (149762673-149763250)
	964-1547, gnl\|Mm7\|chr6 (48662299-48662875)

	cje (0.660939)
	cag (0.453583)
	cmu (0.372787)
	sto (0.359648)
	csp (0.322373)
	cty (0.31224)
	jej (0.197844)
	nlu (0.191681)
	ill (0.175593)
	cki (0.165235)
	nco (0.161734)
	lnt (0.142308)
	csk (0.140746)
	cov (0.132153)
	cly (0.120642)
	clu (0.119646)
	med (0.116252)
	cbl (0.114797)