Ss1.1-Thy1-THY010098G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGCGACCATATTACGTTAACCGGTTTGCAGCTTTCTTCTAGGCAGCTGGGAGATTGCG GGGGCAGCTGGTTCTCCTCCTGTTTCTTCTTCGCTCCCTGCACCCGAAAGGCCTTACAGG CTCCTGGGATCTGGCCTGGTGCTCCGCGGCACCGGGTGGGCGCGGGATGGCTGCAGAAGA GGACGAGGTGGAATGGGTGGTGGAGAGCATTGCGGGTTTCCTGCGAGGCCCGGACTGGTC CATCCCCATCTTGGACTTTGTGGAGCAGAAATGTGAAGTTTTTGATGATGAAGAAGAGAG CAAATTGACCTATACAGAGATTCATCAGGAATACAAAGAACTAGTTGAAAAGCTGTTAGA AAGTTACCTCAAAGAAATTGGAATTAATGAAGATCAGTTTCAAGAAGCATGCACTTCTCC TCTTGCAAAGACCCATACCTCACAGGCCATTTTGCAACCTGTGTTGGCAGCAGAAGATTT TACTATCTTTAAAGCGATGATGGTCCAGAAAAACATTGAAATGCAGCTGCAAGCCATTCG GATAATTCAAGAAAGAAATGGTGTATTACCTGACTGCTTAACAGATGGTTCTGATGTGGT CAGTGACCTTGAACAGGAAGAGATGAAAATCCTGAGGGAAGTTCTTAGAAAATCAAAAGA GGAATATGACCAGGAGGAAGAAAGGAAGAGAAAAAATCAGTTATCAGAGGCTAAAACAGA AGAGCCCTCGATGCATGCCAATGAAACTGTAAAAATGAATAATTCCCAAGGGGATGGTGA ACACTTTGCACACCCACCCTCAGAAGTTAAAGTGCATTTTGCTAATCAGTCAGTACAACC TTTGACAACAAAGCTGGAAATGTTGCCTGAAACTTCTACCCTCCCGAAAAAAGGCCTGAA GATTCCTGGCTTCGAACGTGCAAGCATTGAAGGACCAATAGCAAATTTATCAACACTTGG AACAGAAGAGCTCCGGCAACGAGAACATTATCTAAAGCAGAAGAGAGATAAATTGATGTC CATGAGAAAGGATATGAGGACTAAGCAGATACAAAATTTGGAGGAGAAAGGAACACCTGT TGGCGAGTTAGAGGAAATGACAGAGAAACCAGAAATGACAGCAGAGGAGAAGCAAACATT ACTAAAGAGGAGATTGCTTGCAGAGAAACTTAAAGAAGAAGTTATTAATAAGTAATTTTA AGAACACTTTAGGAAAGCAGGTCAAAATTTCTTAAAAATAAATTATTTAATCCTTAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGCGACCATATTACGTTAACCGGTTTGCAGCTTTCTTCTAGGCAGCTGGGAGATTGCG GGGGCAGCTGGTTCTCCTCCTGTTTCTTCTTCGCTCCCTGCACCCGAAAGGCCTTACAGG CTCCTGGGATCTGGCCTGGTGCTCCGCGGCACCGGGTGGGCGCGGGATGGCTGCAGAAGA GGACGAGGTGGAATGGGTGGTGGAGAGCATTGCGGGTTTCCTGCGAGGCCCGGACTGGTC CATCCCCATCTTGGACTTTGTGGAGCAGAAATGTGAAGTTTTTGATGATGAAGAAGAGAG CAAATTGACCTATACAGAGATTCATCAGGAATACAAAGAACTAGTTGAAAAGCTGTTAGA AAGTTACCTCAAAGAAATTGGAATTAATGAAGATCAGTTTCAAGAAGCATGCACTTCTCC TCTTGCAAAGACCCATACCTCACAGGCCATTTTGCAACCTGTGTTGGCAGCAGAAGATTT TACTATCTTTAAAGCGATGATGGTCCAGAAAAACATTGAAATGCAGCTGCAAGCCATTCG GATAATTCAAGAAAGAAATGGTGTATTACCTGACTGCTTAACAGATGGTTCTGATGTGGT CAGTGACCTTGAACAGGAAGAGATGAAAATCCTGAGGGAAGTTCTTAGAAAATCAAAAGA GGAATATGACCAGGAGGAAGAAAGGAAGAGAAAAAATCAGTTATCAGAGGCTAAAACAGA AGAGCCCTCGATGCATGCCAATGAAACTGTAAAAATGAATAATTCCCAAGGGGATGGTGA ACACTTTGCACACCCACCCTCAGAAGTTAAAGTGCATTTTGCTAATCAGTCAGTACAACC TTTGACAACAAAGCTGGAAATGTTGCCTGAAACTTCTACCCTCCCGAAAAAAGGCCTGAA GATTCCTGGCTTCGAACGTGCAAGCATTGAAGGACCAATAGCAAATTTATCAACACTTGG AACAGAAGAGCTCCGGCAACGAGAACATTATCTAAAGCAGAAGAGAGATAAATTGATGTC CATGAGAAAGGATATGAGGACTAAGCAGATACAAAATTTGGAGGAGAAAGGAACACCTGT TGGCGAGTTAGAGGAAATGACAGAGAAACCAGAAATGACAGCAGAGGAGAAGCAAACATT ACTAAAGAGGAGATTGCTTGCAGAGAAACTTAAAGAAGAAGTTATTAATAAGTAATTTTA AGAACACTTTAGGAAAGCAGGTCAAAATTTCTTAAAAATAAATTATTTAATCCTTAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-278, + strand, RNAz p=0.914059 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-278, + strand, RNAz p=0.914059 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC010011, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-278, gnl|bosTau2|chr11 (20565285-20565561) | |
| 1-278, gnl|Hg17|chr2 (55658424-55658703) | |
| 1-278, gnl|Mm7|chr11 (29199297-29199021) | |
| 441-562, gnl|bosTau2|chr11 (20579689-20579810) | |
| 441-562, gnl|canFam2|chr10 (59538936-59539072) | |
| 441-562, gnl|dasNov1|scaffold_12761 (34719-34855) | |
| 441-562, gnl|echTel1|scaffold_113590 (228-93) | |
| 441-562, gnl|galGal2|chr3 (2242546-2242406) | |
| 441-562, gnl|hg17|chr2 (55667639-55667774) | |
| 441-562, gnl|Hg17|chr2 (55667660-55667781) | |
| 441-562, gnl|loxAfr1|scaffold_29928 (1095-960) | |
| 441-562, gnl|mm7|chr11 (29186507-29186371) | |
| 441-562, gnl|Mm7|chr11 (29186483-29186362) | |
| 441-562, gnl|monDom2|scaffold_1 (18470045-18470180) | |
| 441-562, gnl|oryCun1|scaffold_189716 (47723-47859) | |
| 441-562, gnl|panTro1|chr12 (57825094-57825229) | |
| 441-562, gnl|rheMac2|chr13 (55847968-55848103) | |
| 441-562, gnl|rn3|chr14 (110259023-110258887) | |
| 441-562, gnl|tetNig1|chr17 (10733744-10733627) | |
| 441-562, gnl|xenTro1|scaffold_392 (277330-277468) | |
| 801-943, gnl|bosTau2|chr11 (20594014-20594156) | |
| 801-943, gnl|canFam2|chr10 (59550368-59550584) | |
| 801-943, gnl|dasNov1|scaffold_12761 (45422-45659) | |
| 801-943, gnl|echTel1|scaffold_167428 (6498-6287) | |
| 801-943, gnl|hg17|chr2 (55682667-55682881) | |
| 801-943, gnl|Hg17|chr2 (55682722-55682861) | |
| 801-943, gnl|loxAfr1|scaffold_244 (210186-209968) | |
| 801-943, gnl|mm7|chr11 (29174927-29174737) | |
| 801-943, gnl|Mm7|chr11 (29174892-29174750) | |
| 801-943, gnl|monDom2|scaffold_1 (18491797-18491995) | |
| 801-943, gnl|oryCun1|scaffold_189716 (61386-61599) | |
| 801-943, gnl|panTro1|chr12 (57840245-57840459) | |
| 801-943, gnl|rheMac2|chr13 (55863802-55864016) | |
| 801-943, gnl|rn3|chr14 (110247785-110247581) | |
| 1092-1258, gnl|bosTau2|chr11 (20594971-20595136) | |
| 1092-1258, gnl|Hg17|chr2 (55683692-55683862) | |
| 1092-1258, gnl|Mm7|chr11 (29173993-29173828) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-278, gnl|bosTau2|chr11 (20565285-20565561) | |
| 1-278, gnl|Hg17|chr2 (55658424-55658703) | |
| 1-278, gnl|Mm7|chr11 (29199297-29199021) | |
| 441-562, gnl|bosTau2|chr11 (20579689-20579810) | |
| 441-562, gnl|canFam2|chr10 (59538936-59539072) | |
| 441-562, gnl|dasNov1|scaffold_12761 (34719-34855) | |
| 441-562, gnl|echTel1|scaffold_113590 (228-93) | |
| 441-562, gnl|galGal2|chr3 (2242546-2242406) | |
| 441-562, gnl|hg17|chr2 (55667639-55667774) | |
| 441-562, gnl|Hg17|chr2 (55667660-55667781) | |
| 441-562, gnl|loxAfr1|scaffold_29928 (1095-960) | |
| 441-562, gnl|mm7|chr11 (29186507-29186371) | |
| 441-562, gnl|Mm7|chr11 (29186483-29186362) | |
| 441-562, gnl|monDom2|scaffold_1 (18470045-18470180) | |
| 441-562, gnl|oryCun1|scaffold_189716 (47723-47859) | |
| 441-562, gnl|panTro1|chr12 (57825094-57825229) | |
| 441-562, gnl|rheMac2|chr13 (55847968-55848103) | |
| 441-562, gnl|rn3|chr14 (110259023-110258887) | |
| 441-562, gnl|tetNig1|chr17 (10733744-10733627) | |
| 441-562, gnl|xenTro1|scaffold_392 (277330-277468) | |
| 801-943, gnl|bosTau2|chr11 (20594014-20594156) | |
| 801-943, gnl|canFam2|chr10 (59550368-59550584) | |
| 801-943, gnl|dasNov1|scaffold_12761 (45422-45659) | |
| 801-943, gnl|echTel1|scaffold_167428 (6498-6287) | |
| 801-943, gnl|hg17|chr2 (55682667-55682881) | |
| 801-943, gnl|Hg17|chr2 (55682722-55682861) | |
| 801-943, gnl|loxAfr1|scaffold_244 (210186-209968) | |
| 801-943, gnl|mm7|chr11 (29174927-29174737) | |
| 801-943, gnl|Mm7|chr11 (29174892-29174750) | |
| 801-943, gnl|monDom2|scaffold_1 (18491797-18491995) | |
| 801-943, gnl|oryCun1|scaffold_189716 (61386-61599) | |
| 801-943, gnl|panTro1|chr12 (57840245-57840459) | |
| 801-943, gnl|rheMac2|chr13 (55863802-55864016) | |
| 801-943, gnl|rn3|chr14 (110247785-110247581) | |
| 1092-1258, gnl|bosTau2|chr11 (20594971-20595136) | |
| 1092-1258, gnl|Hg17|chr2 (55683692-55683862) | |
| 1092-1258, gnl|Mm7|chr11 (29173993-29173828) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cbe (1.67464) | |
| cte (1.4637) | |
| tes (0.831255) | |
| fco (0.78604) | |
| fce (0.543183) | |
| pro (0.512033) | |
| spc (0.453463) | |
| aor (0.390549) | |
| gul (0.355177) | |
| ret (0.257467) | |
| thg (0.253582) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sag (0.182715) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ecc (0.115035) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.67464) | |
| cte (1.4637) | |
| tes (0.831255) | |
| fco (0.78604) | |
| fce (0.543183) | |
| pro (0.512033) | |
| spc (0.453463) | |
| aor (0.390549) | |
| gul (0.355177) | |
| ret (0.257467) | |
| thg (0.253582) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sag (0.182715) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ecc (0.115035) |