Non-Coding RNA Search

Ss1.1-Thy1-THY010098H06.5

Sequence:


               
               ATCACTCCATGAAGCTAAAGAAAGTGCTGTGCGTAAGGAGGGCAAAATCATAAAGTTGCA
GAGAGAACTTGAGATGACTAATGATGTAGTAGCAAAACTTCAAGGGGAAGTTAATGAATC
CAATGAATGCCTTGAAAAAACAAAAGAAATGATCCAAGTACTTCAGGACCAAGTTACTTT
AGGAGCTAAGCCCTATAAAGAAGAAATTGAAGACCTCAAAGTGAAGCTGGTGAAAATAGA
CCTAGAGAAAATGAAGAATGCCAAGGAGTTTGAAAAGGAAATTGCTTCTACAAAAGCTAC
TGTAGAATATCAAAAAGAAGTTATAAGGCTATTGCGAGAAAATCTTAGAAGAAATCAACA
GGCCCAAGATACCTCAATGGTATCAGAACATACTGATTCTCAGCCTTCAAATAAACCCTT
AACCTGTGGGGGAGGCAGTGGTATTGTACAAAGCACAAAAGTTCTTATTCTGAAAAATGA
ATATGTGCGGCTAGAAAAGGAAGTTTCTAAGTTAAAGCAGCAAAATGAACAGCTAATAAA
GCAAAAGAATGAACTGTTAAGCAATAATCATCATCTTTCCAATGAAGTTAAAACATGGAA
GGAGAAAACTCTTAAAAGAGAGGCTCGTAAAGAAGTAGCTTGCGAGAATTCTCCAAAGTC
TCCTATAGTGACTGGAACAGCCTCTAAAAAGAGACAGCATATGCCTTCTCACTGCAAGGA
ACAGAATTTACAAGATCCTGGGCCAAAGGAATCGCCGAAATCTTGGTTTTTTGATAGACG
ATCCAAGACTTTGCCAATACCTCCTCCAGTTCGCTATTTTGATAACTCAGGTTTAGGCCT
TTGCCCAGAAGAACAAACCTCGGAAGCAGAGACTGTGGCTCCCCAGCCAGGCCTTTGGCA
TGCCTCCTCGGAAGAAGACGTGCCCGAGTGCAAGATTCAGTAGACCCCTCTCTCTCACCC
CGGGGGCCCAGCGTTCCATGTTTGGAAATGCCTGTGCTTATTACCATATGTGTCTATCCC
AGGCAGCGATGTCATAGTTCAGCTTAATTTCAGCTCAGTTTTCACTTTGCCGCTAGAATT
GGAAGGTGAAGGAATAGGGTGCATTCCCATAATTTAGAATGGTGATAGCAATGCCTTCTT
CTTCAATATAATCATTCTTTAGAAGTTAAATCATTTTATTTATTTATAACTTTTGTAAAG
AATAAAGTTATTGAAGGAAATTTCCAATTTTCCCATGTATACATAAAATGTCTACATTTT
TATTAAAGTTAACCACATATGACCTAGAGAGTTCCAAAGCATAATTCAGAAGTTAACATA
AAGCATCACTTAACGAAATTACAGACTCCTTATTTTTAGGACCCTGTTCATTTAATAAAT
GTTTGATTAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCACTCCATGAAGCTAAAGAAAGTGCTGTGCGTAAGGAGGGCAAAATCATAAAGTTGCA
GAGAGAACTTGAGATGACTAATGATGTAGTAGCAAAACTTCAAGGGGAAGTTAATGAATC
CAATGAATGCCTTGAAAAAACAAAAGAAATGATCCAAGTACTTCAGGACCAAGTTACTTT
AGGAGCTAAGCCCTATAAAGAAGAAATTGAAGACCTCAAAGTGAAGCTGGTGAAAATAGA
CCTAGAGAAAATGAAGAATGCCAAGGAGTTTGAAAAGGAAATTGCTTCTACAAAAGCTAC
TGTAGAATATCAAAAAGAAGTTATAAGGCTATTGCGAGAAAATCTTAGAAGAAATCAACA
GGCCCAAGATACCTCAATGGTATCAGAACATACTGATTCTCAGCCTTCAAATAAACCCTT
AACCTGTGGGGGAGGCAGTGGTATTGTACAAAGCACAAAAGTTCTTATTCTGAAAAATGA
ATATGTGCGGCTAGAAAAGGAAGTTTCTAAGTTAAAGCAGCAAAATGAACAGCTAATAAA
GCAAAAGAATGAACTGTTAAGCAATAATCATCATCTTTCCAATGAAGTTAAAACATGGAA
GGAGAAAACTCTTAAAAGAGAGGCTCGTAAAGAAGTAGCTTGCGAGAATTCTCCAAAGTC
TCCTATAGTGACTGGAACAGCCTCTAAAAAGAGACAGCATATGCCTTCTCACTGCAAGGA
ACAGAATTTACAAGATCCTGGGCCAAAGGAATCGCCGAAATCTTGGTTTTTTGATAGACG
ATCCAAGACTTTGCCAATACCTCCTCCAGTTCGCTATTTTGATAACTCAGGTTTAGGCCT
TTGCCCAGAAGAACAAACCTCGGAAGCAGAGACTGTGGCTCCCCAGCCAGGCCTTTGGCA
TGCCTCCTCGGAAGAAGACGTGCCCGAGTGCAAGATTCAGTAGACCCCTCTCTCTCACCC
CGGGGGCCCAGCGTTCCATGTTTGGAAATGCCTGTGCTTATTACCATATGTGTCTATCCC
AGGCAGCGATGTCATAGTTCAGCTTAATTTCAGCTCAGTTTTCACTTTGCCGCTAGAATT
GGAAGGTGAAGGAATAGGGTGCATTCCCATAATTTAGAATGGTGATAGCAATGCCTTCTT
CTTCAATATAATCATTCTTTAGAAGTTAAATCATTTTATTTATTTATAACTTTTGTAAAG
AATAAAGTTATTGAAGGAAATTTCCAATTTTCCCATGTATACATAAAATGTCTACATTTT
TATTAAAGTTAACCACATATGACCTAGAGAGTTCCAAAGCATAATTCAGAAGTTAACATA
AAGCATCACTTAACGAAATTACAGACTCCTTATTTTTAGGACCCTGTTCATTTAATAAAT
GTTTGATTAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839547|ref|XP_587282.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839547|ref|XP_587282.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-561, gnl|bosTau2|chr12 (17377694-17377135)
               

               
               1-561, gnl|Hg17|chr4 (104399074-104389589)
               


               
               786-1186, gnl|bosTau2|chr12 (17376812-17376415)
               

               
               786-1186, gnl|Hg17|chr4 (104387616-104384738)
               

               
               786-1186, gnl|Mm7|chr1 (18186579-18186928)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-561, gnl|bosTau2|chr12 (17377694-17377135)
               

               
               1-561, gnl|Hg17|chr4 (104399074-104389589)
               


               
               786-1186, gnl|bosTau2|chr12 (17376812-17376415)
               

               
               786-1186, gnl|Hg17|chr4 (104387616-104384738)
               

               
               786-1186, gnl|Mm7|chr1 (18186579-18186928)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.207814)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

	1-561, gnl\|bosTau2\|chr12 (17377694-17377135)
	1-561, gnl\|Hg17\|chr4 (104399074-104389589)

	786-1186, gnl\|bosTau2\|chr12 (17376812-17376415)
	786-1186, gnl\|Hg17\|chr4 (104387616-104384738)
	786-1186, gnl\|Mm7\|chr1 (18186579-18186928)

	tes (0.207814)
	ill (0.175593)
	rec (0.17307)
	eye (0.170503)
	ski (0.146735)
	lin (0.145603)
	thg (0.126791)