Ss1.1-Thy1-THY010098H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGGCGCGCAGCCGTTGCGGGTCCAGCGGTTGCGAGCAGAGCGGTTTCCTGAGTGGCT CCGCTGGGAGGGACTGGGCTGTGCAGGTTCCGAGGCCGGCGGGCAACTCCGCCCGGCCTG AAGCCCCGGCGTCCGCCTCCTTCACCGTCCTTGGATCCGTCGCCATGAATTCCGCCGTCA TCGTGGTCCACGGCGGCGGAGCCAGCTGCATCTCCAAGGACCGGAAAGAGCGGGTCCGCC AGGGCATCGTCAAAGCCGCCACCGTGGGTTACAACATCCTCAAAGAAGGAGGGAGCGCCG TTGACGCTGTGGAAGGAGCCGTCGTTGTCCTGGAAGACGATGCCGAGTTCAACGCAGGTC ATGGATCTGTCTTGAACGAAAATGGTGAAGTTGAAATGGATGCTAGTATCATGAATGGGA AAGACCTGTCTGCGGGAGCAGTGTCTGCAGTCCGCTGTGTCGCAAATCCCATTAAACTTG CGAGGCTTGTTATGGAAAAGACACATCATTGCTTTCTGACCGACCAAGGTGCAGCAAAAT TTGCAGCAGACAATGGGATTCCAGCAATTCCTGGAGAGCAGCTGGTAACAGAAAGAAACA AAAAACGCCTAGAAAAAGAAAAGCATGAGAAGTGTGCTCAGAAATCGGACCCTCAAAAAA GCTTGGGGACCGTGGGTGCCGTGGCCGTGGACTGCCGAGGAAACGTGGCTTACGCGACCT CGACCGGGGGCATCGTTAACAAGATGCCGGGGCGCGTCGGGGACACGCCGTGTATAGGAT CTGGAGGTTATGCTGACAATGACATTGGAGCCATTTCAACGACGGGGCACGGGGAGAGCA TCCTGAAGGTGAATCTGGCCAGACTCACCCTCTTCCACGTAGAACAGGGGAAGACATTAG AAGAGGCTGCTGAGGCGTCGTTGGGTTATATGAAGTCAAAGGTCAAGGGTGTGGGGGGTG TCATCGTGGTCAACAAAGCGGGAGACTGGGCAGTAAAGTGGACCTCGGCCTCCATGCCCT GGGCAGCCGCAAAGGACGGCAAGCTGCACTCTGGAATTGATCTCAGCGACACCAGCGTCA CTGACCTGCCCTAATAAGCCTGGGACGACGGTATTCTCGATGCCAGCTTGGTCGTAAAGC AGGTTCCTGGTGTGGAGACTTAGCCTAATCAATTAGATCTAGAAATGGAAAAATTCTGCC GTCTGTCACTCGTTTTGTTGCCTTGATCAGTGTTTGGTTGGGGGTGGATCCCAAAAGGAT ACAAGAAATGTCCATTTTAAGATCAAAATAAGACTAGTGAAAATGACAAAGTCCACTGAG CCTTTCTCGTGACTGGTCCCCATTGCCTGAGGTTAATAAAGAGGAAAAACAGGTGATCCT GACACGACAGAAACAGCCGTGGTGCAGGGAGTGCTTTTGGAGTTGGGGGACCCACCGCAG GGACAGAGGCTGTAGGCTTGAAGGTTGGGGGGTGGCGGGCAGAGGACAGCAGTACCCCGG GCAAGACCCAGTGCAGGGGCGAGATGGGAGGGAAGGCCCAGGGGAGGCAGCGAAGGGGAG AAGCCGGGCAGACCTCGGAAGGTTGCGGACGCATTCTGAGTCAGGAGAGCACTGGGTGAA AGACTCTCTGAGAGATGAACTGATTTTTCTAAGAACGGGCACGTCTTCTCTGACTTATTA ACATAGATGGCTGTTAATAAGGCTCTATTCTGCCAAGGAACAGTCTTCATGGACGCTCCG GAGCCCCTTCAGGCCCGAGGGTCTTGGGCTCACACACCAGCCCGCTCACGTCGAGGTTCC CACCTGCCCGCACGGCTCATCAGGCCCAGCCCCGCCTCCCAGACCCTCGGGGTCCTCCTA GTGAGCGATGGGGCTCGGGACCTGCACCAGGAAGGGCCAGTCACCGCCGAGAGGACCCTG GCGTCACACCGTCCGGGACAGTCCGGTGCTGTGGGTTCCCCCAGCTCAGCCGGTGTGTAC GCGTGCTCGGCGTGGTGAGCAAAGTCACTCCCTGTTCACGTCTCTTTACACTGGAAATGG TATTTCTTGCTGTAACATAGCCGCCCAGTTTTTCAGTCTGTCAGGGTTCACCTTCTCTCT GGAAAGAAACTGCTTCCCTTTAAATTCCATGTGCCACTAATAAAATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGGCGCGCAGCCGTTGCGGGTCCAGCGGTTGCGAGCAGAGCGGTTTCCTGAGTGGCT CCGCTGGGAGGGACTGGGCTGTGCAGGTTCCGAGGCCGGCGGGCAACTCCGCCCGGCCTG AAGCCCCGGCGTCCGCCTCCTTCACCGTCCTTGGATCCGTCGCCATGAATTCCGCCGTCA TCGTGGTCCACGGCGGCGGAGCCAGCTGCATCTCCAAGGACCGGAAAGAGCGGGTCCGCC AGGGCATCGTCAAAGCCGCCACCGTGGGTTACAACATCCTCAAAGAAGGAGGGAGCGCCG TTGACGCTGTGGAAGGAGCCGTCGTTGTCCTGGAAGACGATGCCGAGTTCAACGCAGGTC ATGGATCTGTCTTGAACGAAAATGGTGAAGTTGAAATGGATGCTAGTATCATGAATGGGA AAGACCTGTCTGCGGGAGCAGTGTCTGCAGTCCGCTGTGTCGCAAATCCCATTAAACTTG CGAGGCTTGTTATGGAAAAGACACATCATTGCTTTCTGACCGACCAAGGTGCAGCAAAAT TTGCAGCAGACAATGGGATTCCAGCAATTCCTGGAGAGCAGCTGGTAACAGAAAGAAACA AAAAACGCCTAGAAAAAGAAAAGCATGAGAAGTGTGCTCAGAAATCGGACCCTCAAAAAA GCTTGGGGACCGTGGGTGCCGTGGCCGTGGACTGCCGAGGAAACGTGGCTTACGCGACCT CGACCGGGGGCATCGTTAACAAGATGCCGGGGCGCGTCGGGGACACGCCGTGTATAGGAT CTGGAGGTTATGCTGACAATGACATTGGAGCCATTTCAACGACGGGGCACGGGGAGAGCA TCCTGAAGGTGAATCTGGCCAGACTCACCCTCTTCCACGTAGAACAGGGGAAGACATTAG AAGAGGCTGCTGAGGCGTCGTTGGGTTATATGAAGTCAAAGGTCAAGGGTGTGGGGGGTG TCATCGTGGTCAACAAAGCGGGAGACTGGGCAGTAAAGTGGACCTCGGCCTCCATGCCCT GGGCAGCCGCAAAGGACGGCAAGCTGCACTCTGGAATTGATCTCAGCGACACCAGCGTCA CTGACCTGCCCTAATAAGCCTGGGACGACGGTATTCTCGATGCCAGCTTGGTCGTAAAGC AGGTTCCTGGTGTGGAGACTTAGCCTAATCAATTAGATCTAGAAATGGAAAAATTCTGCC GTCTGTCACTCGTTTTGTTGCCTTGATCAGTGTTTGGTTGGGGGTGGATCCCAAAAGGAT ACAAGAAATGTCCATTTTAAGATCAAAATAAGACTAGTGAAAATGACAAAGTCCACTGAG CCTTTCTCGTGACTGGTCCCCATTGCCTGAGGTTAATAAAGAGGAAAAACAGGTGATCCT GACACGACAGAAACAGCCGTGGTGCAGGGAGTGCTTTTGGAGTTGGGGGACCCACCGCAG GGACAGAGGCTGTAGGCTTGAAGGTTGGGGGGTGGCGGGCAGAGGACAGCAGTACCCCGG GCAAGACCCAGTGCAGGGGCGAGATGGGAGGGAAGGCCCAGGGGAGGCAGCGAAGGGGAG AAGCCGGGCAGACCTCGGAAGGTTGCGGACGCATTCTGAGTCAGGAGAGCACTGGGTGAA AGACTCTCTGAGAGATGAACTGATTTTTCTAAGAACGGGCACGTCTTCTCTGACTTATTA ACATAGATGGCTGTTAATAAGGCTCTATTCTGCCAAGGAACAGTCTTCATGGACGCTCCG GAGCCCCTTCAGGCCCGAGGGTCTTGGGCTCACACACCAGCCCGCTCACGTCGAGGTTCC CACCTGCCCGCACGGCTCATCAGGCCCAGCCCCGCCTCCCAGACCCTCGGGGTCCTCCTA GTGAGCGATGGGGCTCGGGACCTGCACCAGGAAGGGCCAGTCACCGCCGAGAGGACCCTG GCGTCACACCGTCCGGGACAGTCCGGTGCTGTGGGTTCCCCCAGCTCAGCCGGTGTGTAC GCGTGCTCGGCGTGGTGAGCAAAGTCACTCCCTGTTCACGTCTCTTTACACTGGAAATGG TATTTCTTGCTGTAACATAGCCGCCCAGTTTTTCAGTCTGTCAGGGTTCACCTTCTCTCT GGAAAGAAACTGCTTCCCTTTAAATTCCATGTGCCACTAATAAAATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 168-287, + strand, RNAz p=0.505192 | |
| 499-617, + strand, RNAz p=0.531256 | |
| 1416-1531, - strand, RNAz p=0.985744 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-287, + strand, RNAz p=0.505192 | |
| 499-617, + strand, RNAz p=0.531256 | |
| 1416-1531, - strand, RNAz p=0.985744 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC093070, + | |
| 5' of BC006267, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 129-359, gnl|bosTau2|chr29 (31863172-31863397) | |
| 129-359, gnl|Hg17|chr11 (61861992-61862217) | |
| 129-359, gnl|Mm7|chr19 (8815185-8814960) | |
| 499-658, gnl|bosTau2|chr29 (31873683-31873842) | |
| 499-658, gnl|Hg17|chr11 (61881033-61881192) | |
| 499-658, gnl|Mm7|chr19 (8798863-8798704) | |
| 659-778, gnl|bosTau2|chr29 (31879366-31879485) | |
| 659-778, gnl|canFam2|chr18 (57245049-57244902) | |
| 659-778, gnl|danRer3|chr13 (23131864-23131735) | |
| 659-778, gnl|dasNov1|scaffold_11590 (2771-2642) | |
| 659-778, gnl|echTel1|scaffold_167020 (1840-1971) | |
| 659-778, gnl|fr1|chrUn (188410566-188410438) | |
| 659-778, gnl|galGal2|chr3 (80643884-80644015) | |
| 659-778, gnl|hg17|chr11 (61913181-61913311) | |
| 659-778, gnl|Hg17|chr11 (61913181-61913300) | |
| 659-778, gnl|mm7|chr19 (8796797-8796667) | |
| 659-778, gnl|Mm7|chr19 (8796795-8796676) | |
| 659-778, gnl|monDom2|scaffold_150 (648585-648717) | |
| 659-778, gnl|oryCun1|scaffold_81201 (4393-4523) | |
| 659-778, gnl|panTro1|chr9 (62891056-62891186) | |
| 659-778, gnl|rheMac2|chr14 (11713668-11713538) | |
| 659-778, gnl|rn3|chr1 (211951594-211951464) | |
| 659-778, gnl|tetNig1|chr17 (8450200-8450326) | |
| 889-1687, gnl|bosTau2|chr29 (31880880-31881671) | |
| 889-1687, gnl|Hg17|chr11 (61916126-61916935) | |
| 889-1687, gnl|Mm7|chr19 (8793384-8792669) | |
| 2022-2148, gnl|bosTau2|chr14 (19233120-19233247) | |
| 2022-2148, gnl|Hg17|chr11 (61917322-61917448) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-359, gnl|bosTau2|chr29 (31863172-31863397) | |
| 129-359, gnl|Hg17|chr11 (61861992-61862217) | |
| 129-359, gnl|Mm7|chr19 (8815185-8814960) | |
| 499-658, gnl|bosTau2|chr29 (31873683-31873842) | |
| 499-658, gnl|Hg17|chr11 (61881033-61881192) | |
| 499-658, gnl|Mm7|chr19 (8798863-8798704) | |
| 659-778, gnl|bosTau2|chr29 (31879366-31879485) | |
| 659-778, gnl|canFam2|chr18 (57245049-57244902) | |
| 659-778, gnl|danRer3|chr13 (23131864-23131735) | |
| 659-778, gnl|dasNov1|scaffold_11590 (2771-2642) | |
| 659-778, gnl|echTel1|scaffold_167020 (1840-1971) | |
| 659-778, gnl|fr1|chrUn (188410566-188410438) | |
| 659-778, gnl|galGal2|chr3 (80643884-80644015) | |
| 659-778, gnl|hg17|chr11 (61913181-61913311) | |
| 659-778, gnl|Hg17|chr11 (61913181-61913300) | |
| 659-778, gnl|mm7|chr19 (8796797-8796667) | |
| 659-778, gnl|Mm7|chr19 (8796795-8796676) | |
| 659-778, gnl|monDom2|scaffold_150 (648585-648717) | |
| 659-778, gnl|oryCun1|scaffold_81201 (4393-4523) | |
| 659-778, gnl|panTro1|chr9 (62891056-62891186) | |
| 659-778, gnl|rheMac2|chr14 (11713668-11713538) | |
| 659-778, gnl|rn3|chr1 (211951594-211951464) | |
| 659-778, gnl|tetNig1|chr17 (8450200-8450326) | |
| 889-1687, gnl|bosTau2|chr29 (31880880-31881671) | |
| 889-1687, gnl|Hg17|chr11 (61916126-61916935) | |
| 889-1687, gnl|Mm7|chr19 (8793384-8792669) | |
| 2022-2148, gnl|bosTau2|chr14 (19233120-19233247) | |
| 2022-2148, gnl|Hg17|chr11 (61917322-61917448) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tes (0.415628) | |
| mcp (0.341297) | |
| nje (0.16592) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| mcp (0.341297) | |
| nje (0.16592) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) |