Ss1.1-Thy1-THY010099A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAAATCCACACCCAAGAAGACTTGTAAAAAGAGGCAGTCCTCAGAGTCTGACATTGAGA GTGTCATATACACCATTGAAGCTGTTGCAAAGGGAGACTGGGGCATCGAGAAGCTTGGAG AAACCCCTCGCAAGAAGGTCCGCACATCCTCCAGTGGCAAGGGAAGCATTTTGGATGCCA AGCCACCAAAGAAAAAAGTGAAATCCAGAGAGAAGAAAATGTCAAAGGAGAAATCCTCGG ACACCACCAAAGAGTCGAGACCTCCAGATTTTCTCAGTATTTCTGCCAGCAAGAACATTC CTGGGGAGGTGCCAGAGGGTATAAAAGCAGAACCGTTGACCCCCACGGAGGATGCGCTAC CACCCAGCCTACCTGGACAGGCCAAGCCTGAGGACAGTGACTGTCACAGAAAAATAGAGA CTTGTGGCTTCCGGAAATCCGAGAGGTCTTGCAAAGGTGCTCTTTATAAAACCCTGGTGT CTGAGGGCATGCTCACCTCTCTGCGAGCTAATGTTGACAGAGGGAAACGAAGCTCAGGAA AAGGAAACTCTTCTGATCAGGAAGGGTGTTGGAATGAGGAAAGTTGGACGTTCAACCAGA TTGGGACCAGTGGAAGTAAGAAGTTCAAGAAGACAAAGCCAAAGGAAGACTCTCTCCTTG GCTCAACAAAGCTGGATGAAGAATTTGAAAAGAAATTCAACAGCCTCCCTCAATATAGTC CTGTTACATTTGACCGGAAATGTGTACCTGTCCCAAGAAAAAAGAAAAAGACAGGCAGCA TGTCCTCAGAACCAACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAGAAAAAGAACTTAT TCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCTAATGTTCCGGAAAAAG GAAGTGGGGATAAATGGTCAAACAAGCAATTCTTCTTGGATGCCATTCACCCAACAGAAG CCATATTTTCAGAAGACAAAAACACCACAGAGCCTGCTTATAAGGTTAAAAATGCCCCAT CCATTCCCAACACTCCAGAGCCAACAACAATGCAAGAACCTTTGGTGGGCAGCCAAAAGA GAAAAGCAAGGAAAACCAAGATCACACACCTTGTCAGGACGGCAGATGGCCGGGTATCAC CAGCAGGAGGTACTTTGGATGACAAACCAAAGGAACAACTGCAGAGGAGTCTCCCTAAAG TGACCGAGGCAGGCTGCAATGATGAATGCTCGCACAACCGGGAGGCCGCGGAGACGCGCA GCAGCACCCCGGAGATGCCAGCTGTGTCTGCCTTCTTCAGCCTCGCGGCACTGGCTGAGG TGGCTGCCATGGAAAATGTGCACAGAGGTCAGAGGTCAACTCCGCTCACCCATGATGGAC AGCCAAAAGAGATGCCACAGGCTCCTGTACTTATTTCCTGTGCTGACCAGTGAAGCGCCC TTTAATTGTAAAACATTGTGCTTTACCTACTACCCTAGCCTTGTCTTTACAGAGGGATGC TAGTGAGTCCATGTGGTGGAAAATACAGACTGCAAACAAGTGCTTGTTGCCCCACACGGC CCAGATTCACTTGACGCAGAAGTTGGCATCCTGGGCCAGTTTGTTCTTTCAGAGCCCTGA GTCTTTGAGGGTGATGTTCTTTGTCTGATAATGAGCAGAAACGGGATAATCCTAGAGCTT TGCTTTCTATTGAAGGCTTTTGATGGTAATAGGTGGTAACTTGGTAAAAGGCTGCCTTTA CTGTAGCTCATCCAGCATCTCTTTTACCAACCAGAGAGTGTGAAACTAGTTTCGTATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAAATCCACACCCAAGAAGACTTGTAAAAAGAGGCAGTCCTCAGAGTCTGACATTGAGA GTGTCATATACACCATTGAAGCTGTTGCAAAGGGAGACTGGGGCATCGAGAAGCTTGGAG AAACCCCTCGCAAGAAGGTCCGCACATCCTCCAGTGGCAAGGGAAGCATTTTGGATGCCA AGCCACCAAAGAAAAAAGTGAAATCCAGAGAGAAGAAAATGTCAAAGGAGAAATCCTCGG ACACCACCAAAGAGTCGAGACCTCCAGATTTTCTCAGTATTTCTGCCAGCAAGAACATTC CTGGGGAGGTGCCAGAGGGTATAAAAGCAGAACCGTTGACCCCCACGGAGGATGCGCTAC CACCCAGCCTACCTGGACAGGCCAAGCCTGAGGACAGTGACTGTCACAGAAAAATAGAGA CTTGTGGCTTCCGGAAATCCGAGAGGTCTTGCAAAGGTGCTCTTTATAAAACCCTGGTGT CTGAGGGCATGCTCACCTCTCTGCGAGCTAATGTTGACAGAGGGAAACGAAGCTCAGGAA AAGGAAACTCTTCTGATCAGGAAGGGTGTTGGAATGAGGAAAGTTGGACGTTCAACCAGA TTGGGACCAGTGGAAGTAAGAAGTTCAAGAAGACAAAGCCAAAGGAAGACTCTCTCCTTG GCTCAACAAAGCTGGATGAAGAATTTGAAAAGAAATTCAACAGCCTCCCTCAATATAGTC CTGTTACATTTGACCGGAAATGTGTACCTGTCCCAAGAAAAAAGAAAAAGACAGGCAGCA TGTCCTCAGAACCAACTAAAACCAGCAAAGGTCCTTTCCAGTCTCAGAAAAAGAACTTAT TCCACAAAATTGTCAGCAAATATAAGCACAAAAAGGAGAAGCCTAATGTTCCGGAAAAAG GAAGTGGGGATAAATGGTCAAACAAGCAATTCTTCTTGGATGCCATTCACCCAACAGAAG CCATATTTTCAGAAGACAAAAACACCACAGAGCCTGCTTATAAGGTTAAAAATGCCCCAT CCATTCCCAACACTCCAGAGCCAACAACAATGCAAGAACCTTTGGTGGGCAGCCAAAAGA GAAAAGCAAGGAAAACCAAGATCACACACCTTGTCAGGACGGCAGATGGCCGGGTATCAC CAGCAGGAGGTACTTTGGATGACAAACCAAAGGAACAACTGCAGAGGAGTCTCCCTAAAG TGACCGAGGCAGGCTGCAATGATGAATGCTCGCACAACCGGGAGGCCGCGGAGACGCGCA GCAGCACCCCGGAGATGCCAGCTGTGTCTGCCTTCTTCAGCCTCGCGGCACTGGCTGAGG TGGCTGCCATGGAAAATGTGCACAGAGGTCAGAGGTCAACTCCGCTCACCCATGATGGAC AGCCAAAAGAGATGCCACAGGCTCCTGTACTTATTTCCTGTGCTGACCAGTGAAGCGCCC TTTAATTGTAAAACATTGTGCTTTACCTACTACCCTAGCCTTGTCTTTACAGAGGGATGC TAGTGAGTCCATGTGGTGGAAAATACAGACTGCAAACAAGTGCTTGTTGCCCCACACGGC CCAGATTCACTTGACGCAGAAGTTGGCATCCTGGGCCAGTTTGTTCTTTCAGAGCCCTGA GTCTTTGAGGGTGATGTTCTTTGTCTGATAATGAGCAGAAACGGGATAATCCTAGAGCTT TGCTTTCTATTGAAGGCTTTTGATGGTAATAGGTGGTAACTTGGTAAAAGGCTGCCTTTA CTGTAGCTCATCCAGCATCTCTTTTACCAACCAGAGAGTGTGAAACTAGTTTCGTATATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-319, - strand, RNAz p=0.877542 | |
| 1639-1800, + strand, RNAz p=0.88223 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-319, - strand, RNAz p=0.877542 | |
| 1639-1800, + strand, RNAz p=0.88223 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-530, gnl|bosTau2|chr1 (29214341-29214870) | |
| 1-530, gnl|Hg17|chr3 (108974652-108975181) | |
| 1-530, gnl|Mm7|chr16 (49986731-49986202) | |
| 650-812, gnl|bosTau2|chr1 (29219392-29219554) | |
| 650-812, gnl|canFam2|chr33 (16113799-16113919) | |
| 650-812, gnl|danRer3|chr10 (26791569-26791669) | |
| 650-812, gnl|dasNov1|scaffold_43869 (3038-2918) | |
| 650-812, gnl|echTel1|scaffold_243963 (4088-3967) | |
| 650-812, gnl|fr1|chrUn (139072818-139072941) | |
| 650-812, gnl|galGal2|chr1 (81399165-81399280) | |
| 650-812, gnl|hg17|chr3 (108979895-108980015) | |
| 650-812, gnl|Hg17|chr3 (108979896-108980058) | |
| 650-812, gnl|loxAfr1|scaffold_2400 (52437-52320) | |
| 650-812, gnl|mm7|chr16 (49982539-49982410) | |
| 650-812, gnl|Mm7|chr16 (49982533-49982365) | |
| 650-812, gnl|monDom2|scaffold_50 (96740-96620) | |
| 650-812, gnl|panTro1|chr2 (110490011-110490131) | |
| 650-812, gnl|rheMac2|chr2 (27874983-27875103) | |
| 650-812, gnl|rn3|chr11 (51830370-51830490) | |
| 650-812, gnl|tetNig1|chr7 (1162474-1162356) | |
| 650-812, gnl|xenTro1|scaffold_60 (1528726-1528844) | |
| 959-1166, gnl|bosTau2|chr1 (29237843-29238050) | |
| 959-1166, gnl|Hg17|chr3 (109000058-109000265) | |
| 959-1166, gnl|Mm7|chr16 (49964499-49964292) | |
| 1342-1800, gnl|bosTau2|chr1 (29244653-29245109) | |
| 1342-1800, gnl|canFam2|chr33 (16140735-16141154) | |
| 1342-1800, gnl|dasNov1|scaffold_57630 (5524-5094) | |
| 1342-1800, gnl|echTel1|scaffold_313767 (142868-143298) | |
| 1342-1800, gnl|galGal2|chr1 (81415796-81416219) | |
| 1342-1800, gnl|hg17|chr3 (109006803-109007217) | |
| 1342-1800, gnl|Hg17|chr3 (109006903-109007361) | |
| 1342-1800, gnl|loxAfr1|scaffold_2400 (26846-26416) | |
| 1342-1800, gnl|mm7|chr16 (49959673-49959262) | |
| 1342-1800, gnl|Mm7|chr16 (49959572-49959113) | |
| 1342-1800, gnl|monDom2|scaffold_50 (59056-58609) | |
| 1342-1800, gnl|oryCun1|scaffold_215424 (42506-42083) | |
| 1342-1800, gnl|panTro1|chr2 (110516882-110517296) | |
| 1342-1800, gnl|rheMac2|chr2 (27902501-27902916) | |
| 1342-1800, gnl|rn3|chr11 (51856492-51856903) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-530, gnl|bosTau2|chr1 (29214341-29214870) | |
| 1-530, gnl|Hg17|chr3 (108974652-108975181) | |
| 1-530, gnl|Mm7|chr16 (49986731-49986202) | |
| 650-812, gnl|bosTau2|chr1 (29219392-29219554) | |
| 650-812, gnl|canFam2|chr33 (16113799-16113919) | |
| 650-812, gnl|danRer3|chr10 (26791569-26791669) | |
| 650-812, gnl|dasNov1|scaffold_43869 (3038-2918) | |
| 650-812, gnl|echTel1|scaffold_243963 (4088-3967) | |
| 650-812, gnl|fr1|chrUn (139072818-139072941) | |
| 650-812, gnl|galGal2|chr1 (81399165-81399280) | |
| 650-812, gnl|hg17|chr3 (108979895-108980015) | |
| 650-812, gnl|Hg17|chr3 (108979896-108980058) | |
| 650-812, gnl|loxAfr1|scaffold_2400 (52437-52320) | |
| 650-812, gnl|mm7|chr16 (49982539-49982410) | |
| 650-812, gnl|Mm7|chr16 (49982533-49982365) | |
| 650-812, gnl|monDom2|scaffold_50 (96740-96620) | |
| 650-812, gnl|panTro1|chr2 (110490011-110490131) | |
| 650-812, gnl|rheMac2|chr2 (27874983-27875103) | |
| 650-812, gnl|rn3|chr11 (51830370-51830490) | |
| 650-812, gnl|tetNig1|chr7 (1162474-1162356) | |
| 650-812, gnl|xenTro1|scaffold_60 (1528726-1528844) | |
| 959-1166, gnl|bosTau2|chr1 (29237843-29238050) | |
| 959-1166, gnl|Hg17|chr3 (109000058-109000265) | |
| 959-1166, gnl|Mm7|chr16 (49964499-49964292) | |
| 1342-1800, gnl|bosTau2|chr1 (29244653-29245109) | |
| 1342-1800, gnl|canFam2|chr33 (16140735-16141154) | |
| 1342-1800, gnl|dasNov1|scaffold_57630 (5524-5094) | |
| 1342-1800, gnl|echTel1|scaffold_313767 (142868-143298) | |
| 1342-1800, gnl|galGal2|chr1 (81415796-81416219) | |
| 1342-1800, gnl|hg17|chr3 (109006803-109007217) | |
| 1342-1800, gnl|Hg17|chr3 (109006903-109007361) | |
| 1342-1800, gnl|loxAfr1|scaffold_2400 (26846-26416) | |
| 1342-1800, gnl|mm7|chr16 (49959673-49959262) | |
| 1342-1800, gnl|Mm7|chr16 (49959572-49959113) | |
| 1342-1800, gnl|monDom2|scaffold_50 (59056-58609) | |
| 1342-1800, gnl|oryCun1|scaffold_215424 (42506-42083) | |
| 1342-1800, gnl|panTro1|chr2 (110516882-110517296) | |
| 1342-1800, gnl|rheMac2|chr2 (27902501-27902916) | |
| 1342-1800, gnl|rn3|chr11 (51856492-51856903) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| pla (0.133672) | |
| ret (0.128733) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| pla (0.133672) | |
| ret (0.128733) | |
| ldo (0.0970026) |