Ss1.1-Thy1-THY010099A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTCGTTATCTCGCCAGGCACCGCTCCCCTAAGCCTTGGAGGTGGTCATTCTTCCCGTA GAGGTGGAGGGCGCCTTGTCTTAGTAAGGGAAACACCTCTGATTCTGAGAGGAAGTACAG TCTCTCTCAGTGCCTGGAAGAGGCCAGCAGCTGTTTTCTGGGCAACTGTGGAATGTGCCC TTGGGGGCCCAGGAGAGCAGAAGGAAGATGCTCCAGACCAGTAACTATAGCCTGGTGCTC TCCCTGCAGTTCCTGCTGCTTTCCTATGACCTGTTTGTCAATTCCTTCTCGGAACTACTC CGAATGGCTCCCGTCATACAGCTGGTGCTTTTCATCATCCAGGATATTGCGATCCTCTTC AACATCATCATCGTTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTC AGTCTCCTCTTCCACAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTCGCCCTC AGTATCTCCTTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACCGCTTTGTC TGGACAGACGGGCTTCAGACGTTATTCGTATTCCAGAGACTAGCCGCAGTGCTGTACTGT TACTTCTACAAACGGACAGCTGTGAGACTGGGCGACCCTCGCTTCTACCAGGACTCTTTA TGGCTGCGCAAGGAGTTCATGCAAGTCCGAAGGTGACCGCTCTGTCACACCGACGGGGGA TGCCTTTCCTTCCTGACAGAAGCCATGTTTGCAGCTCTGCAGAGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTCGTTATCTCGCCAGGCACCGCTCCCCTAAGCCTTGGAGGTGGTCATTCTTCCCGTA GAGGTGGAGGGCGCCTTGTCTTAGTAAGGGAAACACCTCTGATTCTGAGAGGAAGTACAG TCTCTCTCAGTGCCTGGAAGAGGCCAGCAGCTGTTTTCTGGGCAACTGTGGAATGTGCCC TTGGGGGCCCAGGAGAGCAGAAGGAAGATGCTCCAGACCAGTAACTATAGCCTGGTGCTC TCCCTGCAGTTCCTGCTGCTTTCCTATGACCTGTTTGTCAATTCCTTCTCGGAACTACTC CGAATGGCTCCCGTCATACAGCTGGTGCTTTTCATCATCCAGGATATTGCGATCCTCTTC AACATCATCATCGTTTTCCTCATGTTCTTCAACACCTTCGTCTTCCAGGCTGGCCTGGTC AGTCTCCTCTTCCACAAGTTCAAAGGGACCATCATCCTGACAGCTGTGTACTTCGCCCTC AGTATCTCCTTTCATGTCTGGGTCATGAACTTACGCTGGAAAAACTCCAACCGCTTTGTC TGGACAGACGGGCTTCAGACGTTATTCGTATTCCAGAGACTAGCCGCAGTGCTGTACTGT TACTTCTACAAACGGACAGCTGTGAGACTGGGCGACCCTCGCTTCTACCAGGACTCTTTA TGGCTGCGCAAGGAGTTCATGCAAGTCCGAAGGTGACCGCTCTGTCACACCGACGGGGGA TGCCTTTCCTTCCTGACAGAAGCCATGTTTGCAGCTCTGCAGAGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 146-335, - strand, RNAz p=0.96885 | |
| 641-754, - strand, RNAz p=0.760629 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 146-335, - strand, RNAz p=0.96885 | |
| 641-754, - strand, RNAz p=0.760629 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 126-335, gnl|bosTau2|chr29 (30928523-30928733) | |
| 126-335, gnl|Hg17|chr11 (60888343-60888566) | |
| 126-335, gnl|Mm7|chr19 (10255593-10255365) | |
| 582-768, gnl|bosTau2|chr29 (30931746-30931931) | |
| 582-768, gnl|canFam2|chr18 (58063828-58063671) | |
| 582-768, gnl|danRer3|chrUn (28324763-28324892) | |
| 582-768, gnl|dasNov1|scaffold_3113 (83575-83695) | |
| 582-768, gnl|echTel1|scaffold_316422 (47989-47852) | |
| 582-768, gnl|fr1|chrUn (157390419-157390544) | |
| 582-768, gnl|galGal2|chrUn (143133629-143133497) | |
| 582-768, gnl|hg17|chr11 (60892624-60892778) | |
| 582-768, gnl|Hg17|chr11 (60892643-60892823) | |
| 582-768, gnl|loxAfr1|scaffold_2055 (42328-42483) | |
| 582-768, gnl|mm7|chr19 (10251414-10251259) | |
| 582-768, gnl|Mm7|chr19 (10251395-10251208) | |
| 582-768, gnl|monDom2|scaffold_33 (28385770-28385926) | |
| 582-768, gnl|oryCun1|scaffold_205944 (91019-91175) | |
| 582-768, gnl|panTro1|chr9 (61815181-61815335) | |
| 582-768, gnl|rheMac2|chr14 (12714787-12714633) | |
| 582-768, gnl|rn3|chr1 (213219755-213219601) | |
| 582-768, gnl|tetNig1|chr13 (10828810-10828929) | |
| 582-768, gnl|xenTro1|scaffold_357 (179000-179145) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-335, gnl|bosTau2|chr29 (30928523-30928733) | |
| 126-335, gnl|Hg17|chr11 (60888343-60888566) | |
| 126-335, gnl|Mm7|chr19 (10255593-10255365) | |
| 582-768, gnl|bosTau2|chr29 (30931746-30931931) | |
| 582-768, gnl|canFam2|chr18 (58063828-58063671) | |
| 582-768, gnl|danRer3|chrUn (28324763-28324892) | |
| 582-768, gnl|dasNov1|scaffold_3113 (83575-83695) | |
| 582-768, gnl|echTel1|scaffold_316422 (47989-47852) | |
| 582-768, gnl|fr1|chrUn (157390419-157390544) | |
| 582-768, gnl|galGal2|chrUn (143133629-143133497) | |
| 582-768, gnl|hg17|chr11 (60892624-60892778) | |
| 582-768, gnl|Hg17|chr11 (60892643-60892823) | |
| 582-768, gnl|loxAfr1|scaffold_2055 (42328-42483) | |
| 582-768, gnl|mm7|chr19 (10251414-10251259) | |
| 582-768, gnl|Mm7|chr19 (10251395-10251208) | |
| 582-768, gnl|monDom2|scaffold_33 (28385770-28385926) | |
| 582-768, gnl|oryCun1|scaffold_205944 (91019-91175) | |
| 582-768, gnl|panTro1|chr9 (61815181-61815335) | |
| 582-768, gnl|rheMac2|chr14 (12714787-12714633) | |
| 582-768, gnl|rn3|chr1 (213219755-213219601) | |
| 582-768, gnl|tetNig1|chr13 (10828810-10828929) | |
| 582-768, gnl|xenTro1|scaffold_357 (179000-179145) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |