Non-Coding RNA Search

Ss1.1-Thy1-THY010099B12.5

Sequence:


               
               GCGCCGCGGGGCGGAGGGGCCGCGACCCTTTCCGCCGGCCTGGGCCTGGCGCTCAATTTA
AACACTTAACCTAAGCCACTGGCGGGCTCCGGAAACGAAACGAAAAGAAAGCCCGAGGTT
CTCCCCGCGGGCCGCCCTCCGGGCCCGCCCTCTGCACGCTGCGCTCCTCGGTAAAGTCCC
TTCTCCCGCCATTTGCCGCGGGGCTCTGGCCGGGCCCGCGCTCCGCGTGCAGAGGCCTGC
GGCCACCCGGAGCGCTCGGCGGGCACGGCGGGCAGCATGGACCGCAGAGACGGGGCTTGC
GGCCGGCAGCACGTGTTCCTGGTCCCAGAATATTTAAAAGATGCTTCAAAGAAGATGAAA
AATGGGCTTATGTTTGTGAAATTGGTTAACCCGTGTTCAGGGGAAGGAGCCATTTACTTG
TTCAATATGTGTCTACCGCAGCTGTTTGAAATAAAAGTTTTCAAGGAAAAACACCATTCT
TGGTTTATAAATGAGTCCGTTCAATCAGGCGGTCTCCTCCACTTTGCCACCCCCATGGAC
CCTCTGTTTCTGCTCCTCCACTACCTTATGAAGGCTGGGAAAGAGGGAAAGTTTCAGCCC
ATAGATCAAGTTGTGATGGATGATATGTTTCCAAATTGCATCTTGTTGCTGAAACTTCCT
GAACTTGAGAAGTTACTTCGACACGTGACAGAGGAAAAAGAAATAGACAAGAAGAAATAT
TACAAGTACAGCAAAGAGAAGACATTAAAATGGCTGGAAAAAAAGGTCCATCAGACTGTA
GCAGCTTTGAAAACCAATAACGTAAATGTCGGTGCCCGGGTACAGTCCACTGCGTTTTTC
TTCGGTGACCAGGCTTCCATTGACAAGGAAGAGGATTATATTCGTTATGCCCATGGTCTG
ATATCTGATTACATACCTAAAGATTTAAGTGACGACTTATCCAAGTATTTGAAGCTTCCA
GCACCTCCAGCGTCAGTGCCAAACCCTCCATCAAAGAAAGTAAAGTTATCAGATGAGCCC
GTAGAAGCAAAAGAAGATTACACTAAGTTTAACAGGAAAGATCTGAAGACTGTAAAGAAA
AATAGCAAAATGACTGCATCTCAGAAGGCTTTGGCTAAAGTTGACAAGAGTGGAATGAAA
AGTATCGATTCCTTTTTTGGGGCAAAACTTGTTAAAAAAGTTGGAAAGATCTGAAACTTT
GAACATGAAATCTAGCAAAAACACTCGCCTTCTACATGTTCCGTTTTCATCCTTCCTCCA
TGCCGTTGTACTTCCTGACCCTTAATTGCCACCTTTGGGGGGAAAAGTACGAATAAGGGG
CATTTTTCAGAGTCACTTGACCATTTCTTTGTGTTCGATTTCTGTGTTCCTAACAAAATG
TGGGAAAGTAATGGTATAACCTCATGGCTTGTGGCCTTTGGAGTTTTATTTGACATCATG
AAAAATAATCAAGGGAATAGAGTCAACCTCTGGCATCGCAGGTTCCTCAATAAACTGACG
TGTGACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGCGGGGCGGAGGGGCCGCGACCCTTTCCGCCGGCCTGGGCCTGGCGCTCAATTTA
AACACTTAACCTAAGCCACTGGCGGGCTCCGGAAACGAAACGAAAAGAAAGCCCGAGGTT
CTCCCCGCGGGCCGCCCTCCGGGCCCGCCCTCTGCACGCTGCGCTCCTCGGTAAAGTCCC
TTCTCCCGCCATTTGCCGCGGGGCTCTGGCCGGGCCCGCGCTCCGCGTGCAGAGGCCTGC
GGCCACCCGGAGCGCTCGGCGGGCACGGCGGGCAGCATGGACCGCAGAGACGGGGCTTGC
GGCCGGCAGCACGTGTTCCTGGTCCCAGAATATTTAAAAGATGCTTCAAAGAAGATGAAA
AATGGGCTTATGTTTGTGAAATTGGTTAACCCGTGTTCAGGGGAAGGAGCCATTTACTTG
TTCAATATGTGTCTACCGCAGCTGTTTGAAATAAAAGTTTTCAAGGAAAAACACCATTCT
TGGTTTATAAATGAGTCCGTTCAATCAGGCGGTCTCCTCCACTTTGCCACCCCCATGGAC
CCTCTGTTTCTGCTCCTCCACTACCTTATGAAGGCTGGGAAAGAGGGAAAGTTTCAGCCC
ATAGATCAAGTTGTGATGGATGATATGTTTCCAAATTGCATCTTGTTGCTGAAACTTCCT
GAACTTGAGAAGTTACTTCGACACGTGACAGAGGAAAAAGAAATAGACAAGAAGAAATAT
TACAAGTACAGCAAAGAGAAGACATTAAAATGGCTGGAAAAAAAGGTCCATCAGACTGTA
GCAGCTTTGAAAACCAATAACGTAAATGTCGGTGCCCGGGTACAGTCCACTGCGTTTTTC
TTCGGTGACCAGGCTTCCATTGACAAGGAAGAGGATTATATTCGTTATGCCCATGGTCTG
ATATCTGATTACATACCTAAAGATTTAAGTGACGACTTATCCAAGTATTTGAAGCTTCCA
GCACCTCCAGCGTCAGTGCCAAACCCTCCATCAAAGAAAGTAAAGTTATCAGATGAGCCC
GTAGAAGCAAAAGAAGATTACACTAAGTTTAACAGGAAAGATCTGAAGACTGTAAAGAAA
AATAGCAAAATGACTGCATCTCAGAAGGCTTTGGCTAAAGTTGACAAGAGTGGAATGAAA
AGTATCGATTCCTTTTTTGGGGCAAAACTTGTTAAAAAAGTTGGAAAGATCTGAAACTTT
GAACATGAAATCTAGCAAAAACACTCGCCTTCTACATGTTCCGTTTTCATCCTTCCTCCA
TGCCGTTGTACTTCCTGACCCTTAATTGCCACCTTTGGGGGGAAAAGTACGAATAAGGGG
CATTTTTCAGAGTCACTTGACCATTTCTTTGTGTTCGATTTCTGTGTTCCTAACAAAATG
TGGGAAAGTAATGGTATAACCTCATGGCTTGTGGCCTTTGGAGTTTTATTTGACATCATG
AAAAATAATCAAGGGAATAGAGTCAACCTCTGGCATCGCAGGTTCCTCAATAAACTGACG
TGTGACAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TBB1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TBB1_HUMAN

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               327-1532, gnl|bosTau2|chr22 (12308179-12309366)
               

               
               327-1532, gnl|Hg17|chr13 (50399542-50428897)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               327-1532, gnl|bosTau2|chr22 (12308179-12309366)
               

               
               327-1532, gnl|Hg17|chr13 (50399542-50428897)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               thg (1.26791)
               

               
               spl (0.572738)
               

               
               med (0.465008)
               

               
               rec (0.346141)
               

               
               nca (0.273748)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.26791)
               

               
               spl (0.572738)
               

               
               med (0.465008)
               

               
               rec (0.346141)
               

               
               nca (0.273748)
               

               
               ret (0.257467)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	327-1532, gnl\|bosTau2\|chr22 (12308179-12309366)
	327-1532, gnl\|Hg17\|chr13 (50399542-50428897)

	thg (1.26791)
	spl (0.572738)
	med (0.465008)
	rec (0.346141)
	nca (0.273748)
	ret (0.257467)
	mgm (0.180343)
	isp (0.150376)
	ssp (0.13552)
	ste (0.135208)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ecc (0.115035)
	cbl (0.114797)
	nbm (0.0993246)