Non-Coding RNA Search

Ss1.1-Thy1-THY010099G03.5

Sequence:


               
               AGTGCTGCTCCGAGCCCGCCAGCCACGGTCTCAGGCGCCAGCTACGCCGCTGCCGCTGTC
ACTATGGCCCATTACAAAGCCGCCGACTCGAAACGCGAGCAGTTCCGGAGGTACTTGGAG
AAGTCGGGGGTGCTGGACACGCTGACCAAGGTATTGGTAGCCTTATATGAAGAACCTGAG
AAACCTAATAGTGCTTTGGATTTTTTAAAGCATCACTTAGGAGCTGCTACCCCAGAAAAC
CCAGAAATAGAGCTGCTTCGCCTAGAATTGGCAGAAATGAAAGAGAAATATGAAGCTATT
GTAGAAGAAAATAAAAAACTGAAAACAAAGCTTGCTCAGTATGAACCACCTCAGGAGGAG
AAGCGTGCTGAATAGGATTCTTCTCAGTTGAAAAGACCCTGAAAAATGGTTTTGTATGAC
TTGAATAGTTTGTATAGTCTATAATCTTTTCTGAACAGATGCTATAGCACTCTTTTAATA
TGTTAAATTCACCTATCACACTTTAACTGTTATAAACACATATACTTAGAATCACCAATA
AAAACTCAATATAACTTTCTTTGGGTCTTAAAAGCAGGAGAATCAAAAGTGAATCCTGGA
AAAAAAAAACAAAAAACAAAAACAAAAACAAAAACAGAACAGAGCCATCTAATTCATTAC
CTTAAAAGACATTCTGTTTATTAGTCTGACTAGGAATGATGGTACTGGTTGTACTTTAGC
CAAGGAAGTTTAGCATGGAGCAGTTCCTTGGTTTAGCTCAGGATATGAGCACAGGTACGG
TCATTCTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCTGCTCCGAGCCCGCCAGCCACGGTCTCAGGCGCCAGCTACGCCGCTGCCGCTGTC
ACTATGGCCCATTACAAAGCCGCCGACTCGAAACGCGAGCAGTTCCGGAGGTACTTGGAG
AAGTCGGGGGTGCTGGACACGCTGACCAAGGTATTGGTAGCCTTATATGAAGAACCTGAG
AAACCTAATAGTGCTTTGGATTTTTTAAAGCATCACTTAGGAGCTGCTACCCCAGAAAAC
CCAGAAATAGAGCTGCTTCGCCTAGAATTGGCAGAAATGAAAGAGAAATATGAAGCTATT
GTAGAAGAAAATAAAAAACTGAAAACAAAGCTTGCTCAGTATGAACCACCTCAGGAGGAG
AAGCGTGCTGAATAGGATTCTTCTCAGTTGAAAAGACCCTGAAAAATGGTTTTGTATGAC
TTGAATAGTTTGTATAGTCTATAATCTTTTCTGAACAGATGCTATAGCACTCTTTTAATA
TGTTAAATTCACCTATCACACTTTAACTGTTATAAACACATATACTTAGAATCACCAATA
AAAACTCAATATAACTTTCTTTGGGTCTTAAAAGCAGGAGAATCAAAAGTGAATCCTGGA
AAAAAAAAACAAAAAACAAAAACAAAAACAAAAACAGAACAGAGCCATCTAATTCATTAC
CTTAAAAGACATTCTGTTTATTAGTCTGACTAGGAATGATGGTACTGGTTGTACTTTAGC
CAAGGAAGTTTAGCATGGAGCAGTTCCTTGGTTTAGCTCAGGATATGAGCACAGGTACGG
TCATTCTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5TA64_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5TA64_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               600-792, + strand, RNAz p=0.999552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               600-792, + strand, RNAz p=0.999552

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_012333, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012333, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               326-792, gnl|bosTau2|chr3 (73370054-73369603)
               

               
               326-792, gnl|Hg17|chr1 (38999483-38999060)
               

               
               326-792, gnl|Mm7|chr4 (123355734-123356157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               326-792, gnl|bosTau2|chr3 (73370054-73369603)
               

               
               326-792, gnl|Hg17|chr1 (38999483-38999060)
               

               
               326-792, gnl|Mm7|chr4 (123355734-123356157)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cte (2.04918)
               

               
               cki (0.495704)
               

               
               fat (0.294855)
               

               
               cst (0.280073)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (2.04918)
               

               
               cki (0.495704)
               

               
               fat (0.294855)
               

               
               cst (0.280073)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

	326-792, gnl\|bosTau2\|chr3 (73370054-73369603)
	326-792, gnl\|Hg17\|chr1 (38999483-38999060)
	326-792, gnl\|Mm7\|chr4 (123355734-123356157)

	cte (2.04918)
	cki (0.495704)
	fat (0.294855)
	cst (0.280073)
	tes (0.207814)
	sto (0.179824)
	gul (0.177588)
	rec (0.17307)
	cut (0.169924)
	isp (0.150376)
	csk (0.140746)
	nca (0.136874)
	ese (0.126502)