Non-Coding RNA Search

Ss1.1-Thy1-THY010100A05.5

Sequence:


               
               AGAGGGCCCTGCGCCGCTTTTCTCCGCTGGCGCCGGCGCTGCTCCCTGCTCCTCCCCGGC
CATGGCGTTCACGTTCGCGGCCTTCTGTTACATGCTGGCGCTGCTGCTTACTGCAGCGCT
CATCTTCTTCGCCATTTGGCACATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAA
TCCTATAGACCAGTGTAATACCCTGAATCCTCTTGTCCTTCCAGAGTACCTCATCCATGC
TTTCTTCTGTGTCATGTTTCTTTGTGCTGCAGAGTGGCTTACCTTGGGTCTCAATATGCC
CCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGACCAGGACT
CTATGACCCTACAACCATCATGAATGCAGATATTCTAGCTTATTGTCAGAAAGAAGGATG
GTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGT
TTTGGTGAGCTCTTAGAACAACACTCAGAAGAATTGGTCCAGTTAAGTGCATGCAAAAAG
CCACCAAATGAAGGGATTCTATCCAGCAAGATCCTGTTTCCAAGAGTAGCCTATGGAATC
TGATCAGTTACTTTAAAAAATGACTCCTTATTTTTTAAATGTTTCCACATTTTTTGCTTG
TGGAAAGACTGTTTTCATATGTTATACTCGGATAAAGAATTTAAATGGAATTACATATAA
ATTAATATAAAATGATACCTCTGGTGTGGACAGGTTTGAACTTGCACTCCTTAAGGAACA
GCCATAATCCCTTGAATGATTGCATTAATTATTGACTGTCTTTAGTCCATTGGAAGCTTT
TGTTTTTAGGAACTTATAGGGCTCATTTTGGTTTTACTGAAATGCCATTTAATTATAAAT
TAGCTGTAGATATCAGGTGCTTCTGATGAACTGAAAATATATATCTGACCTGTGGGAAAC
TTCGGGTTTCCGCATCTATCATGTAGGTGATTATATATGGATAAATTAAAAAAAAAATGA
GTGGGGTTTTTTCCCCCTTAGACTTGAAATATTATTCCTATATTGCATGAATGAGAGATT
TCCATATTTCCACCAGAGTAATATACTTGCTTTAATTCTTAAGCATAATTGAACAAGATA
CAAAAATATATGCTGACTTACTTGTGAAGAATGCATTTAAAGCTTTTTAAATGTGTTTTA
ATTTGTGAGACATTACTTATTAAGAAGTTGGTAATAACTACACATAATTGTTCTAATCTG
GTGGTAAAGGTATTCTTAAGAATTTGCAAGTACTTTAGATTTTCAAAACTGAATGAGAGA
GAACATTGTATAACCGTCCTGCTGTTCCTTTAGTGCAATACAATAAAACTCTGAAATTAA
GACTTATTTTCAGTGCATTGTTTTAAAGATTACAAATAGCTATTTCTTAAACTTGCTTAT
TCCAAATAAAGACATCACTGTCAGTTTTTTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGGCCCTGCGCCGCTTTTCTCCGCTGGCGCCGGCGCTGCTCCCTGCTCCTCCCCGGC
CATGGCGTTCACGTTCGCGGCCTTCTGTTACATGCTGGCGCTGCTGCTTACTGCAGCGCT
CATCTTCTTCGCCATTTGGCACATTATAGCATTTGATGAGCTGAAGACTGATTACAAGAA
TCCTATAGACCAGTGTAATACCCTGAATCCTCTTGTCCTTCCAGAGTACCTCATCCATGC
TTTCTTCTGTGTCATGTTTCTTTGTGCTGCAGAGTGGCTTACCTTGGGTCTCAATATGCC
CCTCTTGGCATATCATATTTGGAGGTATATGAGTAGACCAGTGATGAGTGGACCAGGACT
CTATGACCCTACAACCATCATGAATGCAGATATTCTAGCTTATTGTCAGAAAGAAGGATG
GTGCAAATTAGCTTTTTATCTTCTAGCATTTTTTTACTACCTATATGGCATGATCTATGT
TTTGGTGAGCTCTTAGAACAACACTCAGAAGAATTGGTCCAGTTAAGTGCATGCAAAAAG
CCACCAAATGAAGGGATTCTATCCAGCAAGATCCTGTTTCCAAGAGTAGCCTATGGAATC
TGATCAGTTACTTTAAAAAATGACTCCTTATTTTTTAAATGTTTCCACATTTTTTGCTTG
TGGAAAGACTGTTTTCATATGTTATACTCGGATAAAGAATTTAAATGGAATTACATATAA
ATTAATATAAAATGATACCTCTGGTGTGGACAGGTTTGAACTTGCACTCCTTAAGGAACA
GCCATAATCCCTTGAATGATTGCATTAATTATTGACTGTCTTTAGTCCATTGGAAGCTTT
TGTTTTTAGGAACTTATAGGGCTCATTTTGGTTTTACTGAAATGCCATTTAATTATAAAT
TAGCTGTAGATATCAGGTGCTTCTGATGAACTGAAAATATATATCTGACCTGTGGGAAAC
TTCGGGTTTCCGCATCTATCATGTAGGTGATTATATATGGATAAATTAAAAAAAAAATGA
GTGGGGTTTTTTCCCCCTTAGACTTGAAATATTATTCCTATATTGCATGAATGAGAGATT
TCCATATTTCCACCAGAGTAATATACTTGCTTTAATTCTTAAGCATAATTGAACAAGATA
CAAAAATATATGCTGACTTACTTGTGAAGAATGCATTTAAAGCTTTTTAAATGTGTTTTA
ATTTGTGAGACATTACTTATTAAGAAGTTGGTAATAACTACACATAATTGTTCTAATCTG
GTGGTAAAGGTATTCTTAAGAATTTGCAAGTACTTTAGATTTTCAAAACTGAATGAGAGA
GAACATTGTATAACCGTCCTGCTGTTCCTTTAGTGCAATACAATAAAACTCTGAAATTAA
GACTTATTTTCAGTGCATTGTTTTAAAGATTACAAATAGCTATTTCTTAAACTTGCTTAT
TCCAAATAAAGACATCACTGTCAGTTTTTTAAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZWW6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZWW6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               570-688, - strand, RNAz p=0.986884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               570-688, - strand, RNAz p=0.986884

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               236-744, gnl|bosTau2|chr5 (32701710-32701197)
               

               
               236-744, gnl|Hg17|chr14 (53968664-53964045)
               

               
               236-744, gnl|Mm7|chr14 (42100283-42096367)
               


               
               342-728, gnl|bosTau2|chr19 (25960322-25960701)
               

               
               342-728, gnl|Hg17|chr17 (13498001-13498386)
               


               
               769-1380, gnl|bosTau2|chr26 (31778757-31778147)
               

               
               769-1380, gnl|Hg17|chr14 (53964010-53963402)
               

               
               769-1380, gnl|Mm7|chr14 (42096333-42095752)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-744, gnl|bosTau2|chr5 (32701710-32701197)
               

               
               236-744, gnl|Hg17|chr14 (53968664-53964045)
               

               
               236-744, gnl|Mm7|chr14 (42100283-42096367)
               


               
               342-728, gnl|bosTau2|chr19 (25960322-25960701)
               

               
               342-728, gnl|Hg17|chr17 (13498001-13498386)
               


               
               769-1380, gnl|bosTau2|chr26 (31778757-31778147)
               

               
               769-1380, gnl|Hg17|chr14 (53964010-53963402)
               

               
               769-1380, gnl|Mm7|chr14 (42096333-42095752)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               nms (0.427716)
               

               
               sme (0.305437)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               sme (0.305437)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	236-744, gnl\|bosTau2\|chr5 (32701710-32701197)
	236-744, gnl\|Hg17\|chr14 (53968664-53964045)
	236-744, gnl\|Mm7\|chr14 (42100283-42096367)

	342-728, gnl\|bosTau2\|chr19 (25960322-25960701)
	342-728, gnl\|Hg17\|chr17 (13498001-13498386)

	769-1380, gnl\|bosTau2\|chr26 (31778757-31778147)
	769-1380, gnl\|Hg17\|chr14 (53964010-53963402)
	769-1380, gnl\|Mm7\|chr14 (42096333-42095752)

	nms (0.427716)
	sme (0.305437)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	mcp (0.170648)
	cag (0.151194)
	liv (0.146284)
	ova (0.129132)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)