Ss1.1-Thy1-THY010100B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCAGCTCCACTGCTGAGTGAGTCGGATCCTCAGAGCTGCCCGCCTCCCCACGTGACTG CGCCGACCACCAGCTCCACTGCTGAGCCCACGCGCCATGGCCCTCTTAGGGGCCCTCTTC CTAGTGCTGCTGGCGGGCGCTCACGCGGAGCTCCCCGGCTGCAAAATCCGCATCACCTCC AAGGCGCTGGAGCTGGTGAAGCAGGAGGGGCTGCGCTTTCTGGAGCAAGAGCTGGAGACC ATTACCATTCCGGATCTGCGGGGCAGGGAAGGCCACTTCTACTACAACATCTCTGAGGTG AAGGTCACGGAGCTGCAGCTGACATCCTCTGAGCTCCATTTCCAGCCAGAGCAGGAGCTG ATGCTACAAATCAACAATGGCTCCTTGGGGCTTCGCTTCCGGAGGCAGCTTCTCTACTGG TTCTTCTATGATGGGGGCTATATCAACGCATCCGCCGAGGGCGTTTCCATCCACACGGCT CTGCAGCTCTCCCGGGATCCCACTGGCCGGATCAAAGTGTCCAACGTCTCCTGCCAGGCC TCTGTCTCCAGAATGCACGCAGCCTTTGGAGGAACCTTCAAGAAGGTGTATGAATTCCTG TCCACTTTCATCACCTCGGGGATGCGCTTCCTCCTCAACCAGCAGATCTGCCCCGTGCTC TACCATGCAGGGATGGTGCTTCTCAACTCCCTCCTGGACACTGTGCCTGTGCGCGGTGCT GTGGACGAGCTGGTGGGCATTGACTACTCGCTCCTGAAAGATCCCGTGGCCTCCACCAGC AATCTGGACATGGAATTCCGGGGGGCCTTCTATCCCCTGGCTGAGGGGAACTGGAGCCTG CCCAACCGGGCGGTGGAGCCGCAGCTGCAGGAGGAAGAGCGGATGGTGTACGTGGCCTTC TCTGAGTTCTTCTTCGACTCTGCCATGGAGAGCTACTTCCGGGCGGGGGCCCTGAAGCTG TCGCTGGTGGGGGACAAGGTGCCCCATGACCTGGACATGCTGCTGAGGGCCACCTATTTC GGGAGCATTGTCCTGTTGAGCCCGGCCGTGATTGACTCTCCGCTGAAGCTGGAGCTGCGG GTCATGGCACCACCGCGCTGCACCATCAAGCCCTCGGGCACCACCATCTCTGTCACCGCC AGTGTCACCATTGCCCTGGTCCCACCCGGCCAGCCTGAGGTCCAGCTGTCCAGCATGACC ATGGATGCCCGACTGAGCGCCAAGATGGCCCTCCGGGGGAAGGCGCTGCGCACACAGCTG GACCTGCGCAGGTTCAGAATCTACTCGAACCAGTCTGCACTGGAGTCACTGGCACTGATC CCGCTGCAGGCCCCTCTGAAGACCATGCTGCAGATTGGGGTGATGCCCATGCTCAATGAG CGGACCTGGCGAGGGGTGCAGATCCCACTCCCCGAGGGTATCAACTTTGTGCGCGAGGTG GTGACAAACAACGCAGGCTTCCTCACCATCGGGGCTGACCTCCACTTTGCCAAAGGGCTC CGAGAGGTGATTGAGAAGAACCGGCCTGCCGACACCAGGGGGCCCCAAGCATCCAGTGCC CCGCCCCCCTCCACGGCAGCTGTCTGAGCCCTCAGCCCCCACCCCAGCAGCTGCATCCAG GACTCCGATGCCTCTCATTCCCCCCCACCCCCCATGCCTATAGTGTCCTCTCTAACCTCC AGGGCCACAGAGAAGACGGGTTTTAAATTGTACCCAATTTTATTCCATAATCACTGTCAA GCCATCAATTACAGTCCGTCCGGCCTCCCATGGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCAGCTCCACTGCTGAGTGAGTCGGATCCTCAGAGCTGCCCGCCTCCCCACGTGACTG CGCCGACCACCAGCTCCACTGCTGAGCCCACGCGCCATGGCCCTCTTAGGGGCCCTCTTC CTAGTGCTGCTGGCGGGCGCTCACGCGGAGCTCCCCGGCTGCAAAATCCGCATCACCTCC AAGGCGCTGGAGCTGGTGAAGCAGGAGGGGCTGCGCTTTCTGGAGCAAGAGCTGGAGACC ATTACCATTCCGGATCTGCGGGGCAGGGAAGGCCACTTCTACTACAACATCTCTGAGGTG AAGGTCACGGAGCTGCAGCTGACATCCTCTGAGCTCCATTTCCAGCCAGAGCAGGAGCTG ATGCTACAAATCAACAATGGCTCCTTGGGGCTTCGCTTCCGGAGGCAGCTTCTCTACTGG TTCTTCTATGATGGGGGCTATATCAACGCATCCGCCGAGGGCGTTTCCATCCACACGGCT CTGCAGCTCTCCCGGGATCCCACTGGCCGGATCAAAGTGTCCAACGTCTCCTGCCAGGCC TCTGTCTCCAGAATGCACGCAGCCTTTGGAGGAACCTTCAAGAAGGTGTATGAATTCCTG TCCACTTTCATCACCTCGGGGATGCGCTTCCTCCTCAACCAGCAGATCTGCCCCGTGCTC TACCATGCAGGGATGGTGCTTCTCAACTCCCTCCTGGACACTGTGCCTGTGCGCGGTGCT GTGGACGAGCTGGTGGGCATTGACTACTCGCTCCTGAAAGATCCCGTGGCCTCCACCAGC AATCTGGACATGGAATTCCGGGGGGCCTTCTATCCCCTGGCTGAGGGGAACTGGAGCCTG CCCAACCGGGCGGTGGAGCCGCAGCTGCAGGAGGAAGAGCGGATGGTGTACGTGGCCTTC TCTGAGTTCTTCTTCGACTCTGCCATGGAGAGCTACTTCCGGGCGGGGGCCCTGAAGCTG TCGCTGGTGGGGGACAAGGTGCCCCATGACCTGGACATGCTGCTGAGGGCCACCTATTTC GGGAGCATTGTCCTGTTGAGCCCGGCCGTGATTGACTCTCCGCTGAAGCTGGAGCTGCGG GTCATGGCACCACCGCGCTGCACCATCAAGCCCTCGGGCACCACCATCTCTGTCACCGCC AGTGTCACCATTGCCCTGGTCCCACCCGGCCAGCCTGAGGTCCAGCTGTCCAGCATGACC ATGGATGCCCGACTGAGCGCCAAGATGGCCCTCCGGGGGAAGGCGCTGCGCACACAGCTG GACCTGCGCAGGTTCAGAATCTACTCGAACCAGTCTGCACTGGAGTCACTGGCACTGATC CCGCTGCAGGCCCCTCTGAAGACCATGCTGCAGATTGGGGTGATGCCCATGCTCAATGAG CGGACCTGGCGAGGGGTGCAGATCCCACTCCCCGAGGGTATCAACTTTGTGCGCGAGGTG GTGACAAACAACGCAGGCTTCCTCACCATCGGGGCTGACCTCCACTTTGCCAAAGGGCTC CGAGAGGTGATTGAGAAGAACCGGCCTGCCGACACCAGGGGGCCCCAAGCATCCAGTGCC CCGCCCCCCTCCACGGCAGCTGTCTGAGCCCTCAGCCCCCACCCCAGCAGCTGCATCCAG GACTCCGATGCCTCTCATTCCCCCCCACCCCCCATGCCTATAGTGTCCTCTCTAACCTCC AGGGCCACAGAGAAGACGGGTTTTAAATTGTACCCAATTTTATTCCATAATCACTGTCAA GCCATCAATTACAGTCCGTCCGGCCTCCCATGGGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 55-215, gnl|bosTau2|chr13 (54505426-54505268) | |
| 55-215, gnl|Hg17|chr20 (43973538-43973382) | |
| 55-215, gnl|Mm7|chr2 (164597685-164597529) | |
| 297-425, gnl|bosTau2|chr13 (54504548-54504420) | |
| 297-425, gnl|canFam2|chr24 (36174530-36174673) | |
| 297-425, gnl|danRer3|chr7 (52583296-52583431) | |
| 297-425, gnl|echTel1|scaffold_295837 (10600-10458) | |
| 297-425, gnl|galGal2|chr20 (10049915-10050058) | |
| 297-425, gnl|hg17|chr20 (43971979-43972122) | |
| 297-425, gnl|Hg17|chr20 (43972116-43971988) | |
| 297-425, gnl|loxAfr1|scaffold_108760 (796-939) | |
| 297-425, gnl|mm7|chr2 (164595572-164595715) | |
| 297-425, gnl|Mm7|chr2 (164595709-164595581) | |
| 297-425, gnl|monDom2|scaffold_35 (25237165-25237308) | |
| 297-425, gnl|oryCun1|scaffold_153723 (3897-3754) | |
| 297-425, gnl|panTro1|chr21 (46496206-46496349) | |
| 297-425, gnl|rheMac2|chr10 (18584698-18584555) | |
| 297-425, gnl|rn3|chr3 (155793447-155793590) | |
| 297-425, gnl|tetNig1|chrUn_random (86376975-86377110) | |
| 297-425, gnl|xenTro1|scaffold_131 (1586560-1586417) | |
| 426-582, gnl|bosTau2|chr13 (54504126-54503970) | |
| 426-582, gnl|canFam2|chr24 (36174117-36174285) | |
| 426-582, gnl|danRer3|chr7 (52582263-52582430) | |
| 426-582, gnl|echTel1|scaffold_295837 (10962-10792) | |
| 426-582, gnl|galGal2|chr20 (10049632-10049804) | |
| 426-582, gnl|hg17|chr20 (43971559-43971727) | |
| 426-582, gnl|Hg17|chr20 (43971717-43971561) | |
| 426-582, gnl|loxAfr1|scaffold_18997 (34141-34311) | |
| 426-582, gnl|mm7|chr2 (164594917-164595085) | |
| 426-582, gnl|Mm7|chr2 (164595075-164594919) | |
| 426-582, gnl|monDom2|scaffold_35 (25236670-25236838) | |
| 426-582, gnl|oryCun1|scaffold_153723 (4286-4118) | |
| 426-582, gnl|panTro1|chr21 (46495786-46495954) | |
| 426-582, gnl|rheMac2|chr10 (18585117-18584949) | |
| 426-582, gnl|rn3|chr3 (155792835-155793003) | |
| 426-582, gnl|tetNig1|chrUn_random (86376711-86376876) | |
| 426-582, gnl|xenTro1|scaffold_131 (1586863-1586701) | |
| 798-993, gnl|bosTau2|chr13 (54500429-54500234) | |
| 798-993, gnl|Hg17|chr20 (43967168-43966973) | |
| 798-993, gnl|Mm7|chr2 (164587574-164587379) | |
| 1038-1204, gnl|bosTau2|chr13 (54498305-54498139) | |
| 1038-1204, gnl|Hg17|chr20 (43964651-43964485) | |
| 1038-1204, gnl|Mm7|chr2 (164585414-164585248) | |
| 1351-1454, gnl|bosTau2|chr13 (54496396-54496292) | |
| 1351-1454, gnl|Hg17|chr20 (43961613-43961509) | |
| 1351-1454, gnl|Mm7|chr2 (164580873-164580769) | |
| 1456-1769, gnl|bosTau2|chr13 (54495839-54495521) | |
| 1456-1769, gnl|Hg17|chr20 (43961109-43960802) | |
| 1456-1769, gnl|Mm7|chr2 (164580482-164580173) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-215, gnl|bosTau2|chr13 (54505426-54505268) | |
| 55-215, gnl|Hg17|chr20 (43973538-43973382) | |
| 55-215, gnl|Mm7|chr2 (164597685-164597529) | |
| 297-425, gnl|bosTau2|chr13 (54504548-54504420) | |
| 297-425, gnl|canFam2|chr24 (36174530-36174673) | |
| 297-425, gnl|danRer3|chr7 (52583296-52583431) | |
| 297-425, gnl|echTel1|scaffold_295837 (10600-10458) | |
| 297-425, gnl|galGal2|chr20 (10049915-10050058) | |
| 297-425, gnl|hg17|chr20 (43971979-43972122) | |
| 297-425, gnl|Hg17|chr20 (43972116-43971988) | |
| 297-425, gnl|loxAfr1|scaffold_108760 (796-939) | |
| 297-425, gnl|mm7|chr2 (164595572-164595715) | |
| 297-425, gnl|Mm7|chr2 (164595709-164595581) | |
| 297-425, gnl|monDom2|scaffold_35 (25237165-25237308) | |
| 297-425, gnl|oryCun1|scaffold_153723 (3897-3754) | |
| 297-425, gnl|panTro1|chr21 (46496206-46496349) | |
| 297-425, gnl|rheMac2|chr10 (18584698-18584555) | |
| 297-425, gnl|rn3|chr3 (155793447-155793590) | |
| 297-425, gnl|tetNig1|chrUn_random (86376975-86377110) | |
| 297-425, gnl|xenTro1|scaffold_131 (1586560-1586417) | |
| 426-582, gnl|bosTau2|chr13 (54504126-54503970) | |
| 426-582, gnl|canFam2|chr24 (36174117-36174285) | |
| 426-582, gnl|danRer3|chr7 (52582263-52582430) | |
| 426-582, gnl|echTel1|scaffold_295837 (10962-10792) | |
| 426-582, gnl|galGal2|chr20 (10049632-10049804) | |
| 426-582, gnl|hg17|chr20 (43971559-43971727) | |
| 426-582, gnl|Hg17|chr20 (43971717-43971561) | |
| 426-582, gnl|loxAfr1|scaffold_18997 (34141-34311) | |
| 426-582, gnl|mm7|chr2 (164594917-164595085) | |
| 426-582, gnl|Mm7|chr2 (164595075-164594919) | |
| 426-582, gnl|monDom2|scaffold_35 (25236670-25236838) | |
| 426-582, gnl|oryCun1|scaffold_153723 (4286-4118) | |
| 426-582, gnl|panTro1|chr21 (46495786-46495954) | |
| 426-582, gnl|rheMac2|chr10 (18585117-18584949) | |
| 426-582, gnl|rn3|chr3 (155792835-155793003) | |
| 426-582, gnl|tetNig1|chrUn_random (86376711-86376876) | |
| 426-582, gnl|xenTro1|scaffold_131 (1586863-1586701) | |
| 798-993, gnl|bosTau2|chr13 (54500429-54500234) | |
| 798-993, gnl|Hg17|chr20 (43967168-43966973) | |
| 798-993, gnl|Mm7|chr2 (164587574-164587379) | |
| 1038-1204, gnl|bosTau2|chr13 (54498305-54498139) | |
| 1038-1204, gnl|Hg17|chr20 (43964651-43964485) | |
| 1038-1204, gnl|Mm7|chr2 (164585414-164585248) | |
| 1351-1454, gnl|bosTau2|chr13 (54496396-54496292) | |
| 1351-1454, gnl|Hg17|chr20 (43961613-43961509) | |
| 1351-1454, gnl|Mm7|chr2 (164580873-164580769) | |
| 1456-1769, gnl|bosTau2|chr13 (54495839-54495521) | |
| 1456-1769, gnl|Hg17|chr20 (43961109-43960802) | |
| 1456-1769, gnl|Mm7|chr2 (164580482-164580173) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cov (5.94687) | |
| cag (1.51194) | |
| cty (0.5204) | |
| elu (0.385356) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| eru (0.240096) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (5.94687) | |
| cag (1.51194) | |
| cty (0.5204) | |
| elu (0.385356) | |
| cly (0.361925) | |
| lnt (0.284616) | |
| ute (0.265569) | |
| eru (0.240096) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| jej (0.0989218) |