Ss1.1-Thy1-THY010100B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGACGTCAACGCAGCCCACTAAGCTCCCCCGACCTGTGTACCGCGGCTCTGCCGCGGC TGAGTCCTCCGAGGGTTGGGGTTCGGCGGTTTGCTGAGTACCTTTGCCGCCGCCATGGAC AACTCCGGGAAGGAAGCGGAAGCGATGGCGCTGCTGGCCGAGGCGGAGCGCAAAGTGAAG AACTCGCAGTCCTTTTTCTCGGGCCTCTTTGGAGGCTCATCCAAAATAGAAGAAGCATGT GAAATCTACGCCAGAGCAGCGAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCCGGA AACGCCTTCTGCCAGGCGGCCCAGCTGCACCTGCAGCTCCAGAGCAAGCACGACGCGGCC ACCTGCTTCGTGGACGCCGGCAATGCGTTCAAGAAGGCTGATCCCCAAGAGGCCATTAAC TGTTTGATGAGAGCCATCGAGATCTACACAGACATGGGCCGGTTCACAATCGCCGCTAAG CACCACATCTCCATTGCCGAGATCTACGAGACGGAGCTGGTGGACATCGAGAAGGCCATC GCCCACTACGAGCAGTCTGCAGACTACTACAAAGGCGAGGAGTCCAACAGCTCGGCCAAC AAGTGTCTGCTGAAGGTGGCCGGCTACGCGGCGCAGCTGGAGCAGTACCAGAAGGCCATT GACATCTACGAGCAGGTGGGAACCAATGCCATGGACAGCCCACTCCTCAAGTACAGCGCC AAGGATTACTTCTTCAAGGCGGCCCTCTGCCACTTCTGCATCGACATGCTCAACGCCAAG CTCGCCGTCCAGAAGTACGAGGAGCTCTTCCCCGCGTTCTCTGACTCCCGGGAGTACAAG CTCATGAAAAAATTGCTAGAAGCCCACGAGGAGCAGAATGTGGACAGCTACACTGAGGCG GTCAAGGAGTACGACTCCATCTCCCGGCTGGACCAGTGGCTCACCACCATGCTGCTGCGC ATCAAGAAGACCATCCAGGGCGACGAGGAGGACCTGCGCTAGGCCCCACCCAGCCCCCTG GCGCCCATCCTCCTGCCCCATCTGCTCTCCCCCAGCCGGGCCCTCCAGTGAGGATCACGG CGTGAGCCCAGAGAGAGGTGGGGCCCGAGACCTTGGCTGTGAGACCCCCGATCCTCCCCA CCGAGGAGTCGGTCCCTCAGGCCGCAGCTTGGGCTCAGCACTGCTTTGGGGGCTGCTGAG GCTGGGCCCGCTGGCCAGACTGTCACCCTCTGTTCTCACTGCATCCCTCGCCCCCCGCCC TCTTATTTAAGCCCCCAGAGGTGCCCTTCTCTGCCCCGAAGCGCCGAATTTTTGACCCAG ACCTATCCGCTGGGGGTGGTGTCGGGGGTCAGGGTCAGCATCCGGCCCCCCATCTCCCAA CCAGCTGAGTTGAGAGGTCGGCACCTGTCTCCCCACTTTTGTCCCCCAGCCGAGCTCTGA GCCCATGTAGCCGCTACGATTTGCTCTTGCCCCTGGAGAGGGCCCCTCCCCACCAGTGCC CGGCACCTCCTGCCTCCCACAGCCTGATCTCTGGGGACAGCCCCAGGCTCTGGCGCTCTG AGGATCAAGGGTTGTCCTGTGCCCCCCACCCACCCTCCCTGTGCTTCGAGGTGTTGTTGG TGGGAAGCTGCAGCTGCCCGAGGAAGGAAATAAAATACAGCACCTATGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGACGTCAACGCAGCCCACTAAGCTCCCCCGACCTGTGTACCGCGGCTCTGCCGCGGC TGAGTCCTCCGAGGGTTGGGGTTCGGCGGTTTGCTGAGTACCTTTGCCGCCGCCATGGAC AACTCCGGGAAGGAAGCGGAAGCGATGGCGCTGCTGGCCGAGGCGGAGCGCAAAGTGAAG AACTCGCAGTCCTTTTTCTCGGGCCTCTTTGGAGGCTCATCCAAAATAGAAGAAGCATGT GAAATCTACGCCAGAGCAGCGAACATGTTCAAGATGGCCAAGAACTGGAGTGCTGCCGGA AACGCCTTCTGCCAGGCGGCCCAGCTGCACCTGCAGCTCCAGAGCAAGCACGACGCGGCC ACCTGCTTCGTGGACGCCGGCAATGCGTTCAAGAAGGCTGATCCCCAAGAGGCCATTAAC TGTTTGATGAGAGCCATCGAGATCTACACAGACATGGGCCGGTTCACAATCGCCGCTAAG CACCACATCTCCATTGCCGAGATCTACGAGACGGAGCTGGTGGACATCGAGAAGGCCATC GCCCACTACGAGCAGTCTGCAGACTACTACAAAGGCGAGGAGTCCAACAGCTCGGCCAAC AAGTGTCTGCTGAAGGTGGCCGGCTACGCGGCGCAGCTGGAGCAGTACCAGAAGGCCATT GACATCTACGAGCAGGTGGGAACCAATGCCATGGACAGCCCACTCCTCAAGTACAGCGCC AAGGATTACTTCTTCAAGGCGGCCCTCTGCCACTTCTGCATCGACATGCTCAACGCCAAG CTCGCCGTCCAGAAGTACGAGGAGCTCTTCCCCGCGTTCTCTGACTCCCGGGAGTACAAG CTCATGAAAAAATTGCTAGAAGCCCACGAGGAGCAGAATGTGGACAGCTACACTGAGGCG GTCAAGGAGTACGACTCCATCTCCCGGCTGGACCAGTGGCTCACCACCATGCTGCTGCGC ATCAAGAAGACCATCCAGGGCGACGAGGAGGACCTGCGCTAGGCCCCACCCAGCCCCCTG GCGCCCATCCTCCTGCCCCATCTGCTCTCCCCCAGCCGGGCCCTCCAGTGAGGATCACGG CGTGAGCCCAGAGAGAGGTGGGGCCCGAGACCTTGGCTGTGAGACCCCCGATCCTCCCCA CCGAGGAGTCGGTCCCTCAGGCCGCAGCTTGGGCTCAGCACTGCTTTGGGGGCTGCTGAG GCTGGGCCCGCTGGCCAGACTGTCACCCTCTGTTCTCACTGCATCCCTCGCCCCCCGCCC TCTTATTTAAGCCCCCAGAGGTGCCCTTCTCTGCCCCGAAGCGCCGAATTTTTGACCCAG ACCTATCCGCTGGGGGTGGTGTCGGGGGTCAGGGTCAGCATCCGGCCCCCCATCTCCCAA CCAGCTGAGTTGAGAGGTCGGCACCTGTCTCCCCACTTTTGTCCCCCAGCCGAGCTCTGA GCCCATGTAGCCGCTACGATTTGCTCTTGCCCCTGGAGAGGGCCCCTCCCCACCAGTGCC CGGCACCTCCTGCCTCCCACAGCCTGATCTCTGGGGACAGCCCCAGGCTCTGGCGCTCTG AGGATCAAGGGTTGTCCTGTGCCCCCCACCCACCCTCCCTGTGCTTCGAGGTGTTGTTGG TGGGAAGCTGCAGCTGCCCGAGGAAGGAAATAAAATACAGCACCTATGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1298-1436, - strand, RNAz p=0.849895 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1298-1436, - strand, RNAz p=0.849895 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 2-212, gnl|bosTau2|chr18 (47470996-47470786) | |
| 2-212, gnl|Hg17|chr19 (52710122-52709912) | |
| 2-212, gnl|Mm7|chr7 (13860976-13861178) | |
| 292-409, gnl|bosTau2|chr13 (27420683-27420800) | |
| 292-409, gnl|canFam2|chr24 (3234906-3234758) | |
| 292-409, gnl|danRer3|chr3 (25278013-25277880) | |
| 292-409, gnl|dasNov1|scaffold_93689 (1523-1662) | |
| 292-409, gnl|echTel1|scaffold_196851 (3861-4000) | |
| 292-409, gnl|fr1|chrUn (169769774-169769617) | |
| 292-409, gnl|galGal2|chr3 (3176078-3175920) | |
| 292-409, gnl|hg17|chr20 (23325684-23325843) | |
| 292-409, gnl|Hg17|chr20 (23325826-23325709) | |
| 292-409, gnl|loxAfr1|scaffold_13048 (52781-52933) | |
| 292-409, gnl|mm7|chr2 (148450157-148450308) | |
| 292-409, gnl|Mm7|chr2 (148450291-148450174) | |
| 292-409, gnl|monDom2|scaffold_1 (60018867-60019000) | |
| 292-409, gnl|oryCun1|scaffold_90022 (1722-1565) | |
| 292-409, gnl|panTro1|chr21 (23610842-23611001) | |
| 292-409, gnl|rheMac2|chr10 (56703562-56703721) | |
| 292-409, gnl|rn3|chr3 (137364075-137364226) | |
| 292-409, gnl|tetNig1|chr14 (7498845-7498698) | |
| 292-409, gnl|xenTro1|scaffold_234 (215929-215781) | |
| 673-780, gnl|bosTau2|chr18 (47448924-47448817) | |
| 673-780, gnl|canFam2|chr1 (111415875-111415735) | |
| 673-780, gnl|danRer3|chr18 (47420005-47420137) | |
| 673-780, gnl|dasNov1|scaffold_72997 (12294-12435) | |
| 673-780, gnl|echTel1|scaffold_57208 (1279-1138) | |
| 673-780, gnl|fr1|chrUn (65925366-65925517) | |
| 673-780, gnl|galGal2|chr3 (3178041-3177933) | |
| 673-780, gnl|hg17|chr19 (52687082-52687224) | |
| 673-780, gnl|Hg17|chr19 (52687191-52687084) | |
| 673-780, gnl|loxAfr1|scaffold_24501 (26257-26116) | |
| 673-780, gnl|mm7|chr7 (13876633-13876499) | |
| 673-780, gnl|Mm7|chr7 (13876522-13876629) | |
| 673-780, gnl|monDom2|scaffold_149 (1195466-1195335) | |
| 673-780, gnl|oryCun1|scaffold_5031 (674-555) | |
| 673-780, gnl|panTro1|chr20 (50000493-50000635) | |
| 673-780, gnl|rheMac2|chr19 (53828181-53828322) | |
| 673-780, gnl|rn3|chr1 (76532413-76532279) | |
| 673-780, gnl|tetNig1|chr16 (5098442-5098562) | |
| 673-780, gnl|xenTro1|scaffold_572 (209735-209597) | |
| 900-1668, gnl|bosTau2|chr18 (47445903-47445122) | |
| 900-1668, gnl|Hg17|chr19 (52683459-52682711) | |
| 900-1668, gnl|Mm7|chr7 (13878867-13879527) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-212, gnl|bosTau2|chr18 (47470996-47470786) | |
| 2-212, gnl|Hg17|chr19 (52710122-52709912) | |
| 2-212, gnl|Mm7|chr7 (13860976-13861178) | |
| 292-409, gnl|bosTau2|chr13 (27420683-27420800) | |
| 292-409, gnl|canFam2|chr24 (3234906-3234758) | |
| 292-409, gnl|danRer3|chr3 (25278013-25277880) | |
| 292-409, gnl|dasNov1|scaffold_93689 (1523-1662) | |
| 292-409, gnl|echTel1|scaffold_196851 (3861-4000) | |
| 292-409, gnl|fr1|chrUn (169769774-169769617) | |
| 292-409, gnl|galGal2|chr3 (3176078-3175920) | |
| 292-409, gnl|hg17|chr20 (23325684-23325843) | |
| 292-409, gnl|Hg17|chr20 (23325826-23325709) | |
| 292-409, gnl|loxAfr1|scaffold_13048 (52781-52933) | |
| 292-409, gnl|mm7|chr2 (148450157-148450308) | |
| 292-409, gnl|Mm7|chr2 (148450291-148450174) | |
| 292-409, gnl|monDom2|scaffold_1 (60018867-60019000) | |
| 292-409, gnl|oryCun1|scaffold_90022 (1722-1565) | |
| 292-409, gnl|panTro1|chr21 (23610842-23611001) | |
| 292-409, gnl|rheMac2|chr10 (56703562-56703721) | |
| 292-409, gnl|rn3|chr3 (137364075-137364226) | |
| 292-409, gnl|tetNig1|chr14 (7498845-7498698) | |
| 292-409, gnl|xenTro1|scaffold_234 (215929-215781) | |
| 673-780, gnl|bosTau2|chr18 (47448924-47448817) | |
| 673-780, gnl|canFam2|chr1 (111415875-111415735) | |
| 673-780, gnl|danRer3|chr18 (47420005-47420137) | |
| 673-780, gnl|dasNov1|scaffold_72997 (12294-12435) | |
| 673-780, gnl|echTel1|scaffold_57208 (1279-1138) | |
| 673-780, gnl|fr1|chrUn (65925366-65925517) | |
| 673-780, gnl|galGal2|chr3 (3178041-3177933) | |
| 673-780, gnl|hg17|chr19 (52687082-52687224) | |
| 673-780, gnl|Hg17|chr19 (52687191-52687084) | |
| 673-780, gnl|loxAfr1|scaffold_24501 (26257-26116) | |
| 673-780, gnl|mm7|chr7 (13876633-13876499) | |
| 673-780, gnl|Mm7|chr7 (13876522-13876629) | |
| 673-780, gnl|monDom2|scaffold_149 (1195466-1195335) | |
| 673-780, gnl|oryCun1|scaffold_5031 (674-555) | |
| 673-780, gnl|panTro1|chr20 (50000493-50000635) | |
| 673-780, gnl|rheMac2|chr19 (53828181-53828322) | |
| 673-780, gnl|rn3|chr1 (76532413-76532279) | |
| 673-780, gnl|tetNig1|chr16 (5098442-5098562) | |
| 673-780, gnl|xenTro1|scaffold_572 (209735-209597) | |
| 900-1668, gnl|bosTau2|chr18 (47445903-47445122) | |
| 900-1668, gnl|Hg17|chr19 (52683459-52682711) | |
| 900-1668, gnl|Mm7|chr7 (13878867-13879527) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ill (0.351185) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| jca (0.22792) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| hyp (0.142837) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| eje (0.0988338) |