Ss1.1-Thy1-THY010100C01.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGTTGCATTGTGGCTTGTCGTGAGCCGGGAGGCCTCAGCGCAGAGTTGGCGAGGGGGCAA GGGGTGCAAAGGGCCGGGGCAGCAGGTGGGAGCCTCTCAGACGCCTCCACTCCTTCAGTA GGCCGCTCGCTACCCCCATGTTCCTGAGAAGCGTCTACGCACGGCTACTGAGCCGCGGAC CTTGCCTTCGAGTCCTTCGCTCATGGGGCTCGGCAGCGGCGCAAACCGGGAAAGGCGGAA AGACCCAGGGCAGATCGGCCAAGTCCTCACGGCCTGAGTTTGACTGGAGGGACCCACTAG TGCTGGAAGAGCAGCTCACAGCAGATGAGATCCTCATCCGGGACACCTTCCGCACCTACT GCCAGGAGCACCTCATGCCCCGCATCGTGCTGGCCAATCGCAACGAAGTTTTTCACCGGG AGATCATCTCAGAGATGGGGGAGCTTGGTGTGCTGGGCCCCACCATCAAAGGGTATGGCT GTGCTGGAGTGTCATCTGTGGCCTATGGACTCCTGGCCCGAGAGTTAGAGCGGGTGGACA GCGGCTACAGGTCAGCAATGAGTGTCCAGTCCTCCCTGGTCATGCACCCTATCTATGCCT ACGGCAGCGAAGAGCAGCAGCAGAAATACCTGCCCCGGCTGGCCAAGGGGGAGCTCCTGG GCTGCTTCGGGCTCACAGAGCCCAACCACGGGAGTGACCCTGGCAGCATGGAAACCAGAG CCCGCCACAACCCATCCAACAGGAGCTACACCCTCAATGGGGCCAAGACCTGGATCACCA ACTCGCCTGTGGCTGACCTGTTTGTAGTGTGGGCTCGGTGTGAAGATAATTGCATTCGGG GCTTCCTGCTGGAGAAAGGGATGCGGGGCCTCTCAGCCCCCAAAATCGAGGGCAAGTTCT CTCTGCGGGCCTCAGCCACGGGTATGATTATCATGGACGATGTAGAGGTGCCAGAGGAGA ATGTGCTGCCCAAGGCGTCTAGTCTGGCGGGTCCCTTCGGCTGCCTCAACAATGCCCGCT ATGGCATCTCCTGGGGTGTGCTTGGAGCCGCTGAGTTCTGTTTGCACACAGCCCGGCAGT ACACTCTGGACAGGATCCAGTTTGGTGTCCCACTGGCCAAGAACCAACTTATTCAGAGGA AGCTGGCAGACATGCTCACCGAGATCACTCTGGGCCTTCATGCCTGCCTGCAGCTCGGCC GCTTGAAGGATCAAGACAAGGTCACCCCGGAAATGGTCTCCCTGCTGAAGAGGAATAACT GTGGGAAGGCCTTGGACATTGCCCGCCAGGCTCGAGACATGCTGGGTGGGAATGGGATTT CTGATGAGTATCACGTGATCCGGCATGCCATGAACCTGGAGGCTGTGAACACCTATGAAG GCACTCATGACATCCATGCTCTGATCCTCGGAAGGGCAATCACAGGGATCCAGGCATTCA CGACTGACAAGTGAACACACTTCACCCAGGAGCCCGGATGCTACCAAGCCCACACCCAGG GAGACGCTGTGCTCTGAGCTTAATCAGGGAGGTGGCAGATGGAGCCAATTCTTCTGGTAG GAAGTGAGAGACGCTGATTTTAAATATCAAAATTTCCCTCTTGAAGTCATTCAAATGTGC TCCTTAAAAAGAAGATGAGACTCCCTGTACTGAGTTTCTCAATCCACTTTTAACTGTGGA TGGGAACAGACTCCATTACCTCAGAACAGAAGCTTCTTTTGACAGGGGAACAGGGAGAGG GAAGGATAATGACAGGAAGCAACTTGTGAAACCCACCTGGTGTTTGACTAAGCAAACTAC CCCCCTTCACACACACACCAAGAGTTCACTCTGCACCCTCTGACCCTCCCATCTGGGGTA AGTGCCTTATGCAGAGCAAGGGGAAAAGAGAATAATAAAGCGCCTACATGTCCAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGTTGCATTGTGGCTTGTCGTGAGCCGGGAGGCCTCAGCGCAGAGTTGGCGAGGGGGCAA GGGGTGCAAAGGGCCGGGGCAGCAGGTGGGAGCCTCTCAGACGCCTCCACTCCTTCAGTA GGCCGCTCGCTACCCCCATGTTCCTGAGAAGCGTCTACGCACGGCTACTGAGCCGCGGAC CTTGCCTTCGAGTCCTTCGCTCATGGGGCTCGGCAGCGGCGCAAACCGGGAAAGGCGGAA AGACCCAGGGCAGATCGGCCAAGTCCTCACGGCCTGAGTTTGACTGGAGGGACCCACTAG TGCTGGAAGAGCAGCTCACAGCAGATGAGATCCTCATCCGGGACACCTTCCGCACCTACT GCCAGGAGCACCTCATGCCCCGCATCGTGCTGGCCAATCGCAACGAAGTTTTTCACCGGG AGATCATCTCAGAGATGGGGGAGCTTGGTGTGCTGGGCCCCACCATCAAAGGGTATGGCT GTGCTGGAGTGTCATCTGTGGCCTATGGACTCCTGGCCCGAGAGTTAGAGCGGGTGGACA GCGGCTACAGGTCAGCAATGAGTGTCCAGTCCTCCCTGGTCATGCACCCTATCTATGCCT ACGGCAGCGAAGAGCAGCAGCAGAAATACCTGCCCCGGCTGGCCAAGGGGGAGCTCCTGG GCTGCTTCGGGCTCACAGAGCCCAACCACGGGAGTGACCCTGGCAGCATGGAAACCAGAG CCCGCCACAACCCATCCAACAGGAGCTACACCCTCAATGGGGCCAAGACCTGGATCACCA ACTCGCCTGTGGCTGACCTGTTTGTAGTGTGGGCTCGGTGTGAAGATAATTGCATTCGGG GCTTCCTGCTGGAGAAAGGGATGCGGGGCCTCTCAGCCCCCAAAATCGAGGGCAAGTTCT CTCTGCGGGCCTCAGCCACGGGTATGATTATCATGGACGATGTAGAGGTGCCAGAGGAGA ATGTGCTGCCCAAGGCGTCTAGTCTGGCGGGTCCCTTCGGCTGCCTCAACAATGCCCGCT ATGGCATCTCCTGGGGTGTGCTTGGAGCCGCTGAGTTCTGTTTGCACACAGCCCGGCAGT ACACTCTGGACAGGATCCAGTTTGGTGTCCCACTGGCCAAGAACCAACTTATTCAGAGGA AGCTGGCAGACATGCTCACCGAGATCACTCTGGGCCTTCATGCCTGCCTGCAGCTCGGCC GCTTGAAGGATCAAGACAAGGTCACCCCGGAAATGGTCTCCCTGCTGAAGAGGAATAACT GTGGGAAGGCCTTGGACATTGCCCGCCAGGCTCGAGACATGCTGGGTGGGAATGGGATTT CTGATGAGTATCACGTGATCCGGCATGCCATGAACCTGGAGGCTGTGAACACCTATGAAG GCACTCATGACATCCATGCTCTGATCCTCGGAAGGGCAATCACAGGGATCCAGGCATTCA CGACTGACAAGTGAACACACTTCACCCAGGAGCCCGGATGCTACCAAGCCCACACCCAGG GAGACGCTGTGCTCTGAGCTTAATCAGGGAGGTGGCAGATGGAGCCAATTCTTCTGGTAG GAAGTGAGAGACGCTGATTTTAAATATCAAAATTTCCCTCTTGAAGTCATTCAAATGTGC TCCTTAAAAAGAAGATGAGACTCCCTGTACTGAGTTTCTCAATCCACTTTTAACTGTGGA TGGGAACAGACTCCATTACCTCAGAACAGAAGCTTCTTTTGACAGGGGAACAGGGAGAGG GAAGGATAATGACAGGAAGCAACTTGTGAAACCCACCTGGTGTTTGACTAAGCAAACTAC CCCCCTTCACACACACACCAAGAGTTCACTCTGCACCCTCTGACCCTCCCATCTGGGGTA AGTGCCTTATGCAGAGCAAGGGGAAAAGAGAATAATAAAGCGCCTACATGTCCAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
848-1569, - strand, RNAz p=0.998337 | |
1086-1220, - strand, RNAz p=0.912715 | |
1103-1220, - strand, RNAz p=0.797628 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
848-1569, - strand, RNAz p=0.998337 | |
1086-1220, - strand, RNAz p=0.912715 | |
1103-1220, - strand, RNAz p=0.797628 |
Aligned organism(s): 89 entry(ies) | More info |
Aligned organism(s): 89 entry(ies) | Help | Less info |
123-229, gnl|bosTau2|chr7 (8585617-8585723) | |
123-229, gnl|canFam2|chr20 (52290447-52289933) | |
123-229, gnl|canFam2|chr20 (52290390-52290222) | |
123-229, gnl|echTel1|scaffold_314497 (325-785) | |
123-229, gnl|echTel1|scaffold_314497 (328-497) | |
123-229, gnl|galGal2|chr28 (3320591-3320435) | |
123-229, gnl|hg17|chr12 (102399500-102399878) | |
123-229, gnl|hg17|chr19 (12863037-12863206) | |
123-229, gnl|Hg17|chr19 (12863104-12863210) | |
123-229, gnl|loxAfr1|scaffold_7607 (44034-43505) | |
123-229, gnl|loxAfr1|scaffold_7607 (44001-43832) | |
123-229, gnl|mm7|chr8 (83479861-83479279) | |
123-229, gnl|mm7|chr8 (83479839-83479670) | |
123-229, gnl|Mm7|chr8 (83479780-83479664) | |
123-229, gnl|oryCun1|scaffold_158262 (4589-4163) | |
123-229, gnl|oryCun1|scaffold_158262 (4556-4397) | |
123-229, gnl|panTro1|chr10 (104873344-104873722) | |
123-229, gnl|panTro1|chr20 (13470819-13470988) | |
123-229, gnl|rheMac2|chr11 (104623515-104623893) | |
123-229, gnl|rheMac2|chr19 (12559033-12559201) | |
123-229, gnl|rn3|chr19 (24924414-24924992) | |
123-229, gnl|rn3|chr19 (24924436-24924605) | |
458-642, gnl|bosTau2|chr7 (8587023-8587207) | |
458-642, gnl|canFam2|chr20 (52289208-52289008) | |
458-642, gnl|danRer3|chr3 (3468561-3468373) | |
458-642, gnl|echTel1|scaffold_231919 (4834-4636) | |
458-642, gnl|fr1|chrUn (106221769-106221584) | |
458-642, gnl|hg17|chr19 (12865273-12865475) | |
458-642, gnl|Hg17|chr19 (12865282-12865467) | |
458-642, gnl|loxAfr1|scaffold_7607 (42857-42659) | |
458-642, gnl|mm7|chr8 (83478706-83478506) | |
458-642, gnl|Mm7|chr8 (83478696-83478512) | |
458-642, gnl|monDom2|scaffold_159 (43456-43636) | |
458-642, gnl|oryCun1|scaffold_158262 (3777-3576) | |
458-642, gnl|panTro1|chr20 (13473082-13473284) | |
458-642, gnl|rheMac2|chr19 (12561874-12562076) | |
458-642, gnl|rn3|chr19 (24925639-24925839) | |
458-642, gnl|tetNig1|chr18 (4427734-4427549) | |
458-642, gnl|xenTro1|scaffold_468 (339394-339586) | |
769-990, gnl|bosTau2|chr7 (8588165-8588386) | |
769-990, gnl|canFam2|chr20 (52288099-52287884) | |
769-990, gnl|canFam2|chr20 (52288120-52287918) | |
769-990, gnl|danRer3|chr3 (3463263-3463060) | |
769-990, gnl|danRer3|chr3 (3463278-3463083) | |
769-990, gnl|echTel1|scaffold_231919 (3801-3586) | |
769-990, gnl|echTel1|scaffold_231919 (3823-3620) | |
769-990, gnl|fr1|chrUn (106220926-106220710) | |
769-990, gnl|fr1|chrUn (106220933-106220744) | |
769-990, gnl|hg17|chr12 (102400514-102400718) | |
769-990, gnl|hg17|chr19 (12867998-12868200) | |
769-990, gnl|Hg17|chr19 (12868015-12868236) | |
769-990, gnl|mm7|chr8 (83477039-83476824) | |
769-990, gnl|mm7|chr8 (83477060-83476858) | |
769-990, gnl|Mm7|chr8 (83477041-83476820) | |
769-990, gnl|monDom2|scaffold_159 (45473-45673) | |
769-990, gnl|monDom2|scaffold_2 (17100653-17100844) | |
769-990, gnl|oryCun1|scaffold_67000 (611-401) | |
769-990, gnl|oryCun1|scaffold_67000 (632-430) | |
769-990, gnl|panTro1|chr10 (104874358-104874562) | |
769-990, gnl|panTro1|chr20 (13475804-13476006) | |
769-990, gnl|rheMac2|chr11 (104624528-104624732) | |
769-990, gnl|rheMac2|chr19 (12564891-12565093) | |
769-990, gnl|rn3|chr19 (24927256-24927471) | |
769-990, gnl|rn3|chr19 (24927235-24927437) | |
769-990, gnl|tetNig1|chr18 (4426882-4426668) | |
769-990, gnl|tetNig1|chr18 (4426894-4426702) | |
769-990, gnl|xenTro1|scaffold_468 (341283-341497) | |
769-990, gnl|xenTro1|scaffold_468 (341261-341463) | |
1086-1220, gnl|bosTau2|chr7 (8589561-8589695) | |
1086-1220, gnl|canFam2|chr20 (52286992-52286910) | |
1086-1220, gnl|danRer3|chr3 (3460201-3460119) | |
1086-1220, gnl|dasNov1|scaffold_69084 (6372-6290) | |
1086-1220, gnl|echTel1|scaffold_231919 (3094-3012) | |
1086-1220, gnl|fr1|chrUn (106220351-106220269) | |
1086-1220, gnl|hg17|chr12 (102400826-102400905) | |
1086-1220, gnl|Hg17|chr19 (12869109-12869243) | |
1086-1220, gnl|loxAfr1|scaffold_7607 (40713-40631) | |
1086-1220, gnl|mm7|chr8 (83475497-83475415) | |
1086-1220, gnl|Mm7|chr8 (83475506-83475371) | |
1086-1220, gnl|monDom2|scaffold_2 (17100915-17100991) | |
1086-1220, gnl|oryCun1|scaffold_158262 (1884-1802) | |
1086-1220, gnl|panTro1|chr10 (104874670-104874749) | |
1086-1220, gnl|rheMac2|chr11 (104624840-104624921) | |
1086-1220, gnl|rn3|chr19 (24928240-24928322) | |
1086-1220, gnl|tetNig1|chr18 (4426396-4426314) | |
1086-1220, gnl|xenTro1|scaffold_468 (341974-342056) | |
1379-1872, gnl|bosTau2|chr7 (8591879-8592363) | |
1379-1872, gnl|Hg17|chr19 (12871280-12871732) | |
1379-1872, gnl|Mm7|chr8 (83473165-83472743) |
Aligned organism(s): 89 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
123-229, gnl|bosTau2|chr7 (8585617-8585723) | |
123-229, gnl|canFam2|chr20 (52290447-52289933) | |
123-229, gnl|canFam2|chr20 (52290390-52290222) | |
123-229, gnl|echTel1|scaffold_314497 (325-785) | |
123-229, gnl|echTel1|scaffold_314497 (328-497) | |
123-229, gnl|galGal2|chr28 (3320591-3320435) | |
123-229, gnl|hg17|chr12 (102399500-102399878) | |
123-229, gnl|hg17|chr19 (12863037-12863206) | |
123-229, gnl|Hg17|chr19 (12863104-12863210) | |
123-229, gnl|loxAfr1|scaffold_7607 (44034-43505) | |
123-229, gnl|loxAfr1|scaffold_7607 (44001-43832) | |
123-229, gnl|mm7|chr8 (83479861-83479279) | |
123-229, gnl|mm7|chr8 (83479839-83479670) | |
123-229, gnl|Mm7|chr8 (83479780-83479664) | |
123-229, gnl|oryCun1|scaffold_158262 (4589-4163) | |
123-229, gnl|oryCun1|scaffold_158262 (4556-4397) | |
123-229, gnl|panTro1|chr10 (104873344-104873722) | |
123-229, gnl|panTro1|chr20 (13470819-13470988) | |
123-229, gnl|rheMac2|chr11 (104623515-104623893) | |
123-229, gnl|rheMac2|chr19 (12559033-12559201) | |
123-229, gnl|rn3|chr19 (24924414-24924992) | |
123-229, gnl|rn3|chr19 (24924436-24924605) | |
458-642, gnl|bosTau2|chr7 (8587023-8587207) | |
458-642, gnl|canFam2|chr20 (52289208-52289008) | |
458-642, gnl|danRer3|chr3 (3468561-3468373) | |
458-642, gnl|echTel1|scaffold_231919 (4834-4636) | |
458-642, gnl|fr1|chrUn (106221769-106221584) | |
458-642, gnl|hg17|chr19 (12865273-12865475) | |
458-642, gnl|Hg17|chr19 (12865282-12865467) | |
458-642, gnl|loxAfr1|scaffold_7607 (42857-42659) | |
458-642, gnl|mm7|chr8 (83478706-83478506) | |
458-642, gnl|Mm7|chr8 (83478696-83478512) | |
458-642, gnl|monDom2|scaffold_159 (43456-43636) | |
458-642, gnl|oryCun1|scaffold_158262 (3777-3576) | |
458-642, gnl|panTro1|chr20 (13473082-13473284) | |
458-642, gnl|rheMac2|chr19 (12561874-12562076) | |
458-642, gnl|rn3|chr19 (24925639-24925839) | |
458-642, gnl|tetNig1|chr18 (4427734-4427549) | |
458-642, gnl|xenTro1|scaffold_468 (339394-339586) | |
769-990, gnl|bosTau2|chr7 (8588165-8588386) | |
769-990, gnl|canFam2|chr20 (52288099-52287884) | |
769-990, gnl|canFam2|chr20 (52288120-52287918) | |
769-990, gnl|danRer3|chr3 (3463263-3463060) | |
769-990, gnl|danRer3|chr3 (3463278-3463083) | |
769-990, gnl|echTel1|scaffold_231919 (3801-3586) | |
769-990, gnl|echTel1|scaffold_231919 (3823-3620) | |
769-990, gnl|fr1|chrUn (106220926-106220710) | |
769-990, gnl|fr1|chrUn (106220933-106220744) | |
769-990, gnl|hg17|chr12 (102400514-102400718) | |
769-990, gnl|hg17|chr19 (12867998-12868200) | |
769-990, gnl|Hg17|chr19 (12868015-12868236) | |
769-990, gnl|mm7|chr8 (83477039-83476824) | |
769-990, gnl|mm7|chr8 (83477060-83476858) | |
769-990, gnl|Mm7|chr8 (83477041-83476820) | |
769-990, gnl|monDom2|scaffold_159 (45473-45673) | |
769-990, gnl|monDom2|scaffold_2 (17100653-17100844) | |
769-990, gnl|oryCun1|scaffold_67000 (611-401) | |
769-990, gnl|oryCun1|scaffold_67000 (632-430) | |
769-990, gnl|panTro1|chr10 (104874358-104874562) | |
769-990, gnl|panTro1|chr20 (13475804-13476006) | |
769-990, gnl|rheMac2|chr11 (104624528-104624732) | |
769-990, gnl|rheMac2|chr19 (12564891-12565093) | |
769-990, gnl|rn3|chr19 (24927256-24927471) | |
769-990, gnl|rn3|chr19 (24927235-24927437) | |
769-990, gnl|tetNig1|chr18 (4426882-4426668) | |
769-990, gnl|tetNig1|chr18 (4426894-4426702) | |
769-990, gnl|xenTro1|scaffold_468 (341283-341497) | |
769-990, gnl|xenTro1|scaffold_468 (341261-341463) | |
1086-1220, gnl|bosTau2|chr7 (8589561-8589695) | |
1086-1220, gnl|canFam2|chr20 (52286992-52286910) | |
1086-1220, gnl|danRer3|chr3 (3460201-3460119) | |
1086-1220, gnl|dasNov1|scaffold_69084 (6372-6290) | |
1086-1220, gnl|echTel1|scaffold_231919 (3094-3012) | |
1086-1220, gnl|fr1|chrUn (106220351-106220269) | |
1086-1220, gnl|hg17|chr12 (102400826-102400905) | |
1086-1220, gnl|Hg17|chr19 (12869109-12869243) | |
1086-1220, gnl|loxAfr1|scaffold_7607 (40713-40631) | |
1086-1220, gnl|mm7|chr8 (83475497-83475415) | |
1086-1220, gnl|Mm7|chr8 (83475506-83475371) | |
1086-1220, gnl|monDom2|scaffold_2 (17100915-17100991) | |
1086-1220, gnl|oryCun1|scaffold_158262 (1884-1802) | |
1086-1220, gnl|panTro1|chr10 (104874670-104874749) | |
1086-1220, gnl|rheMac2|chr11 (104624840-104624921) | |
1086-1220, gnl|rn3|chr19 (24928240-24928322) | |
1086-1220, gnl|tetNig1|chr18 (4426396-4426314) | |
1086-1220, gnl|xenTro1|scaffold_468 (341974-342056) | |
1379-1872, gnl|bosTau2|chr7 (8591879-8592363) | |
1379-1872, gnl|Hg17|chr19 (12871280-12871732) | |
1379-1872, gnl|Mm7|chr8 (83473165-83472743) |
Expressed library(ies): 22 entry(ies) | More info |
Expressed library(ies): 22 entry(ies) | Help | Less info |
nco (0.323468) | |
cli (0.305623) | |
fat (0.294855) | |
hea (0.204499) | |
col (0.195008) | |
mgm (0.180343) | |
sto (0.179824) | |
eye (0.170503) | |
csp (0.161186) | |
mga (0.160205) | |
lun (0.150489) | |
ski (0.146735) | |
spl (0.143184) | |
hyp (0.142837) | |
lyg (0.133103) | |
ret (0.128733) | |
bla (0.124347) | |
cly (0.120642) | |
med (0.116252) | |
spc (0.113366) | |
cty (0.10408) | |
ldo (0.0970026) |
Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nco (0.323468) | |
cli (0.305623) | |
fat (0.294855) | |
hea (0.204499) | |
col (0.195008) | |
mgm (0.180343) | |
sto (0.179824) | |
eye (0.170503) | |
csp (0.161186) | |
mga (0.160205) | |
lun (0.150489) | |
ski (0.146735) | |
spl (0.143184) | |
hyp (0.142837) | |
lyg (0.133103) | |
ret (0.128733) | |
bla (0.124347) | |
cly (0.120642) | |
med (0.116252) | |
spc (0.113366) | |
cty (0.10408) | |
ldo (0.0970026) |