Non-Coding RNA Search

Ss1.1-Thy1-THY010100H08.5

Sequence:


               
               GAGCGGCGGCGGGAGGTGAAATCCGGTTCTAACCGGTCCGGGGCTCCCAGCGCTATAAAA
ACTTTATAAACCCCCCGGAGCCCGAGCAGTGTGAAGAAGAGGCGAGAGCGACCCCTGGAC
CGACCAAAGCTCGCGCGCCACTGCATCCCCGTGTCCAGCGCCTACGTCCCGCCGCCGTCA
CCATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAAGGGGATAAAGCCAAGGTGAAGGACG
AACCACAGAGAAGATCTGCGAGGTTATCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCA
AGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGGAAAG
CCGATGCTGGCAAGGATGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGG
CACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTG
TACTTCTGGTGACTGTACAGTTTGAAATACTATTTTTTATCAAGTTTTATAAAAATGCAG
AATTTTGTTTTACTTTTTTTTTTTTAAGCTATGTTGTTAGCACACAGAACACTTCATTGT
TGCTTTGGGGAAAGGGCACATGTCACTAATAGAATGTCTCTGAAGCTGGATTGACATGGG
GAAAAAACACCTTTCCCATCTAGTTTTGAGACTTCTTGGTTCCCAGGAAGGAGGGATTCC
TTGATGTTGACACACATTAGCCATCTTGGCACAAATGCCTTGTGGTGTGGAAAACTAAAA
TTAGTTTTTTATGCCCTCTTCTCCCTCTCCACCTTGAGCATAGACTTGACTCCCTTAATC
CCAGAGAGACCTACTGGGACCTGATCCCACAAAATTGGTTATCAGAATTGTCAGGCAATT
TGGACCTTCCGGTGTCACCATTAAGATGGCATCTCTCAAAAGAGCAGTGGTTCCTTTTTT
AGATTGTGGATCTTCAAATTGATAATTCTGCCATTTTCATTTCCATTTCCTGAAAGTCAG
GGTCGGCTTGTGAAAAGTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCT
AAACTTTCCCTGTTCAGAGCATCACATGAAGACTTCATGGGTTTTATAGTGGCTTTCTGA
TTTTGGTAGTCCATTGAAAAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCT
GCCCATGTCCTGCCTGAAATACCATGATTGTTTATGAAAAGTATCTTTAATAAAGCTGGA
TACAGTTTGGCTAAAAAAAAAAAATCTAATCTTTTCCCAGGAGTATGGGAACCTGATTTC
TCCAGGTCTCTTGGGGCAGGATGCATTCTGGTGTAGAGGTTCCATGGACAGTCAGTCTTT
ACAGTCCATCTGCAGAACACAGTGTTACGTGGAGTTGGGAAAGATCGCAGGAGTGGACTG
ATGAGAGGCTGGGAGCAGAGAAGTGGTTTCTGTATTTGGTCATGCAACACTGCCTGAAGT
GTGTTTTTAAAAGCAGATAAATTTGGTAGGTCTGAGATTTCGGCCTGGTAGCTGATAATA
AAAGAGCCTTTCCATTTCATTCACATTTAAGATTTCTGTAAAATAAGGAAATTAATAGAT
GCATTAATAGCTGTATAACCCCTTTAGTGAGGAGAGAGGGATTCTGTGTCCACATTTGGC
CATCAGATGTATAAGGCAGATGGCACCCTGCTCTTAAGCAGACCTGCAAGTCTTCTGTGA
ATTGTTTAAATTCTTGTACTAGCTCCAAAAATAAAAATGTTAGTGGGGACTTTTGCTTTA
GTTAGGAGACTATGCAAAAGAAACCTTTTCCTCTAGGGAAATAGTAAAAAGTTAGCTGTT
AGGAAATAGAATCTGTAATAAGTTGATACTTGTAATTTGAATTTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCGGCGGGAGGTGAAATCCGGTTCTAACCGGTCCGGGGCTCCCAGCGCTATAAAA
ACTTTATAAACCCCCCGGAGCCCGAGCAGTGTGAAGAAGAGGCGAGAGCGACCCCTGGAC
CGACCAAAGCTCGCGCGCCACTGCATCCCCGTGTCCAGCGCCTACGTCCCGCCGCCGTCA
CCATGCCCAAGAGAAAGGCTGAAGGGGATGCTAAAGGGGATAAAGCCAAGGTGAAGGACG
AACCACAGAGAAGATCTGCGAGGTTATCTGCTAAACCTGCTCCTCCAAAGCCAGAGCCCA
AGCCTAAAAAGGCCCCTGCAAAGAAGGGAGAGAAGGTACCCAAAGGGAAAAAGGGGAAAG
CCGATGCTGGCAAGGATGGGAATAACCCTGCAGAAAATGGAGATGCCAAAACAGACCAGG
CACAGAAAGCTGAAGGTGCTGGAGATGCCAAGTGAAGTGTGTGCATTTTTGATAACTGTG
TACTTCTGGTGACTGTACAGTTTGAAATACTATTTTTTATCAAGTTTTATAAAAATGCAG
AATTTTGTTTTACTTTTTTTTTTTTAAGCTATGTTGTTAGCACACAGAACACTTCATTGT
TGCTTTGGGGAAAGGGCACATGTCACTAATAGAATGTCTCTGAAGCTGGATTGACATGGG
GAAAAAACACCTTTCCCATCTAGTTTTGAGACTTCTTGGTTCCCAGGAAGGAGGGATTCC
TTGATGTTGACACACATTAGCCATCTTGGCACAAATGCCTTGTGGTGTGGAAAACTAAAA
TTAGTTTTTTATGCCCTCTTCTCCCTCTCCACCTTGAGCATAGACTTGACTCCCTTAATC
CCAGAGAGACCTACTGGGACCTGATCCCACAAAATTGGTTATCAGAATTGTCAGGCAATT
TGGACCTTCCGGTGTCACCATTAAGATGGCATCTCTCAAAAGAGCAGTGGTTCCTTTTTT
AGATTGTGGATCTTCAAATTGATAATTCTGCCATTTTCATTTCCATTTCCTGAAAGTCAG
GGTCGGCTTGTGAAAAGTTGTTAAACAACATGCTAAATGTGAAATGTCAACCCTCACTCT
AAACTTTCCCTGTTCAGAGCATCACATGAAGACTTCATGGGTTTTATAGTGGCTTTCTGA
TTTTGGTAGTCCATTGAAAAAGGGAGTTTGAAAGTTGTTGTATACTGTTAACGATTGTCT
GCCCATGTCCTGCCTGAAATACCATGATTGTTTATGAAAAGTATCTTTAATAAAGCTGGA
TACAGTTTGGCTAAAAAAAAAAAATCTAATCTTTTCCCAGGAGTATGGGAACCTGATTTC
TCCAGGTCTCTTGGGGCAGGATGCATTCTGGTGTAGAGGTTCCATGGACAGTCAGTCTTT
ACAGTCCATCTGCAGAACACAGTGTTACGTGGAGTTGGGAAAGATCGCAGGAGTGGACTG
ATGAGAGGCTGGGAGCAGAGAAGTGGTTTCTGTATTTGGTCATGCAACACTGCCTGAAGT
GTGTTTTTAAAAGCAGATAAATTTGGTAGGTCTGAGATTTCGGCCTGGTAGCTGATAATA
AAAGAGCCTTTCCATTTCATTCACATTTAAGATTTCTGTAAAATAAGGAAATTAATAGAT
GCATTAATAGCTGTATAACCCCTTTAGTGAGGAGAGAGGGATTCTGTGTCCACATTTGGC
CATCAGATGTATAAGGCAGATGGCACCCTGCTCTTAAGCAGACCTGCAAGTCTTCTGTGA
ATTGTTTAAATTCTTGTACTAGCTCCAAAAATAAAAATGTTAGTGGGGACTTTTGCTTTA
GTTAGGAGACTATGCAAAAGAAACCTTTTCCTCTAGGGAAATAGTAAAAAGTTAGCTGTT
AGGAAATAGAATCTGTAATAAGTTGATACTTGTAATTTGAATTTGCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FGI5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FGI5_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               700-814, - strand, RNAz p=0.943128
               

               
               853-967, - strand, RNAz p=0.986368

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               700-814, - strand, RNAz p=0.943128
               

               
               853-967, - strand, RNAz p=0.986368

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               98-198, gnl|bosTau2|chr2 (78336470-78336574)
               

               
               98-198, gnl|Hg17|chr1 (26483153-26483261)
               

               
               98-198, gnl|Mm7|chr4 (133346325-133346227)
               


               
               241-542, gnl|bosTau2|chr10 (32136140-32136442)
               

               
               241-542, gnl|Mm7|chr9 (68334226-68333733)
               


               
               700-1284, gnl|bosTau2|chr24 (16480538-16481117)
               

               
               700-1284, gnl|Hg17|chr16 (25951108-25950532)
               

               
               700-1284, gnl|Mm7|chr5 (45736504-45737066)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-198, gnl|bosTau2|chr2 (78336470-78336574)
               

               
               98-198, gnl|Hg17|chr1 (26483153-26483261)
               

               
               98-198, gnl|Mm7|chr4 (133346325-133346227)
               


               
               241-542, gnl|bosTau2|chr10 (32136140-32136442)
               

               
               241-542, gnl|Mm7|chr9 (68334226-68333733)
               


               
               700-1284, gnl|bosTau2|chr24 (16480538-16481117)
               

               
               700-1284, gnl|Hg17|chr16 (25951108-25950532)
               

               
               700-1284, gnl|Mm7|chr5 (45736504-45737066)

Expressed library(ies): 75 entry(ies)

More info

Expressed library(ies): 75 entry(ies)

Help | Less info


               
               fty (3.51679)
               

               
               eye (2.72805)
               

               
               nbm (2.08582)
               

               
               elu (1.92678)
               

               
               med (1.86003)
               

               
               spl (1.71821)
               

               
               pro (1.5361)
               

               
               ecc (1.49546)
               

               
               cbl (1.49237)
               

               
               ese (1.39152)
               

               
               eje (1.28484)
               

               
               thg (1.26791)
               

               
               pgl (1.18483)
               

               
               cty (1.14488)
               

               
               lnt (1.13847)
               

               
               bla (1.11912)
               

               
               pty (0.999001)
               

               
               eep (0.980512)
               

               
               col (0.975039)
               

               
               cly (0.965135)
               

               
               nco (0.808669)
               

               
               eli (0.759071)
               

               
               ebs (0.709807)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               nmm (0.664011)
               

               
               csp (0.644745)
               

               
               eru (0.60024)
               

               
               clu (0.598229)
               

               
               cte (0.58548)
               

               
               jca (0.569801)
               

               
               spc (0.566829)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               sug (0.509165)
               

               
               jej (0.494609)
               

               
               cag (0.453583)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               nlu (0.383362)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 75 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (3.51679)
               

               
               eye (2.72805)
               

               
               nbm (2.08582)
               

               
               elu (1.92678)
               

               
               med (1.86003)
               

               
               spl (1.71821)
               

               
               pro (1.5361)
               

               
               ecc (1.49546)
               

               
               cbl (1.49237)
               

               
               ese (1.39152)
               

               
               eje (1.28484)
               

               
               thg (1.26791)
               

               
               pgl (1.18483)
               

               
               cty (1.14488)
               

               
               lnt (1.13847)
               

               
               bla (1.11912)
               

               
               pty (0.999001)
               

               
               eep (0.980512)
               

               
               col (0.975039)
               

               
               cly (0.965135)
               

               
               nco (0.808669)
               

               
               eli (0.759071)
               

               
               ebs (0.709807)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               fhi (0.678311)
               

               
               nmm (0.664011)
               

               
               csp (0.644745)
               

               
               eru (0.60024)
               

               
               clu (0.598229)
               

               
               cte (0.58548)
               

               
               jca (0.569801)
               

               
               spc (0.566829)
               

               
               fce (0.543183)
               

               
               cov (0.528611)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               mcp (0.511945)
               

               
               sug (0.509165)
               

               
               jej (0.494609)
               

               
               cag (0.453583)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               amn (0.417711)
               

               
               tes (0.415628)
               

               
               nlu (0.383362)
               

               
               sag (0.36543)
               

               
               rec (0.346141)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	700-814, - strand, RNAz p=0.943128
	853-967, - strand, RNAz p=0.986368

	98-198, gnl\|bosTau2\|chr2 (78336470-78336574)
	98-198, gnl\|Hg17\|chr1 (26483153-26483261)
	98-198, gnl\|Mm7\|chr4 (133346325-133346227)

	241-542, gnl\|bosTau2\|chr10 (32136140-32136442)
	241-542, gnl\|Mm7\|chr9 (68334226-68333733)

	700-1284, gnl\|bosTau2\|chr24 (16480538-16481117)
	700-1284, gnl\|Hg17\|chr16 (25951108-25950532)
	700-1284, gnl\|Mm7\|chr5 (45736504-45737066)

	fty (3.51679)
	eye (2.72805)
	nbm (2.08582)
	elu (1.92678)
	med (1.86003)
	spl (1.71821)
	pro (1.5361)
	ecc (1.49546)
	cbl (1.49237)
	ese (1.39152)
	eje (1.28484)
	thg (1.26791)
	pgl (1.18483)
	cty (1.14488)
	lnt (1.13847)
	bla (1.11912)
	pty (0.999001)
	eep (0.980512)
	col (0.975039)
	cly (0.965135)
	nco (0.808669)
	eli (0.759071)
	ebs (0.709807)
	ece (0.687916)
	nca (0.684369)
	fhi (0.678311)
	nmm (0.664011)
	csp (0.644745)
	eru (0.60024)
	clu (0.598229)
	cte (0.58548)
	jca (0.569801)
	spc (0.566829)
	fce (0.543183)
	cov (0.528611)
	ill (0.526778)
	duo (0.518403)
	mcp (0.511945)
	sug (0.509165)
	jej (0.494609)
	cag (0.453583)
	bfe (0.449573)
	lin (0.436808)
	amn (0.417711)
	tes (0.415628)
	nlu (0.383362)
	sag (0.36543)
	rec (0.346141)
	nje (0.33184)
	cli (0.305623)
	sme (0.305437)
	lun (0.300978)
	liv (0.292569)
	hyp (0.285673)
	csk (0.281492)
	ova (0.258264)
	mas (0.210305)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	sin (0.174948)
	cje (0.165235)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	ret (0.128733)
	tra (0.123092)
	ldo (0.0970026)