Ss1.1-Thy1-THY010102C05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCAGCGGCGGCCGGCCAGGAGCAAGATGGCGCTGCGGCCAGGAACGGGAGCTGGCG GCAGCGGGGCCGCGGGAGCTGGCGCGGGGGCCGCCGGCGGAGGCAGCTTTATGTTTCCGG TTGCAGGTGGAATAAGACCCCCTCAAGGAATGATGCCAATGCAGCAACAAGGATTTCCTA TGGTCTCAGTCATGCAGCCTAACATGCAAGGCATGATAGGAATGAATTACAGCTCTCAAA TGTCCCAAGGACCCATTGCCATGCAGGCAGGCATACCAATGGGACCAATACCAGCAGGAG GAATGCCTTACCTGGGACAAGCACCATTCCTGGGGATGCGTCCTCCAGGCCCACAGTACA CTCCAGACATGCAGAAGCAGTTTGCTGAAGAGCAGCAAAAACGATTTGAACAACAGCAAA AGCTCTTAGAAGAAGAAAGAAAAAGACGCCAGTTTGAAGAGCAGAAGCAAAAGCTCAGAC TTCTGAGTAGTGTGAAACCCAAGACAGGAGAGAAGAGTAGAGATGATGCTTTGGAAGCTA TTAAAGGAAACTTAGATGGGTTCTCCAGAGATGCTAAGATGCACCCAACTCCAGCATCAC ACCCTAAGAAACCAGATTATCCCACATCATCTCATTCTACTAAAACTGTCTCCCCATCAC CTGCCTTTCTTGATGAAGAAGAATTCAGTGACTTTATGCAGGGGCCTGTTGAAGTTCCCA CATGTGGGCCTTCTTCCACTTCCCAGCCTTTTCAGTCTTTCCATCCCACCACCCCACTTG GCCAGTTGCATACACAGAAGGCTGGAGCCCAGCCTCTCCCTCCAGGCCCTTCCTTGGAGG AGAAGCTCCTAGTATCTTGTGATATAAGTACATCTGGGCAGGAACAAATTAAATTAAATA CTTCTGAAGGTGGGCACAGAGCCATAGGCCCAGGTTCCAGTAAAAACCACCCCAGTTTAA CGGCCAATACCGGGGGTGCTGTAGATGGACGTGTAAGTGGTACCACTACGGCAGAGGCAG AAAAGACTTCAGACCAAAACCTGTCCATTGAAGAGAGTGGTGTGGGAGTATTTCCCTCAC AGGATCCTGTTCAGCCTAGAATGCCTCCTCGCATTTACAACGAGAGCTTGGTTCCAGATG CCTATAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCAGCGGCGGCCGGCCAGGAGCAAGATGGCGCTGCGGCCAGGAACGGGAGCTGGCG GCAGCGGGGCCGCGGGAGCTGGCGCGGGGGCCGCCGGCGGAGGCAGCTTTATGTTTCCGG TTGCAGGTGGAATAAGACCCCCTCAAGGAATGATGCCAATGCAGCAACAAGGATTTCCTA TGGTCTCAGTCATGCAGCCTAACATGCAAGGCATGATAGGAATGAATTACAGCTCTCAAA TGTCCCAAGGACCCATTGCCATGCAGGCAGGCATACCAATGGGACCAATACCAGCAGGAG GAATGCCTTACCTGGGACAAGCACCATTCCTGGGGATGCGTCCTCCAGGCCCACAGTACA CTCCAGACATGCAGAAGCAGTTTGCTGAAGAGCAGCAAAAACGATTTGAACAACAGCAAA AGCTCTTAGAAGAAGAAAGAAAAAGACGCCAGTTTGAAGAGCAGAAGCAAAAGCTCAGAC TTCTGAGTAGTGTGAAACCCAAGACAGGAGAGAAGAGTAGAGATGATGCTTTGGAAGCTA TTAAAGGAAACTTAGATGGGTTCTCCAGAGATGCTAAGATGCACCCAACTCCAGCATCAC ACCCTAAGAAACCAGATTATCCCACATCATCTCATTCTACTAAAACTGTCTCCCCATCAC CTGCCTTTCTTGATGAAGAAGAATTCAGTGACTTTATGCAGGGGCCTGTTGAAGTTCCCA CATGTGGGCCTTCTTCCACTTCCCAGCCTTTTCAGTCTTTCCATCCCACCACCCCACTTG GCCAGTTGCATACACAGAAGGCTGGAGCCCAGCCTCTCCCTCCAGGCCCTTCCTTGGAGG AGAAGCTCCTAGTATCTTGTGATATAAGTACATCTGGGCAGGAACAAATTAAATTAAATA CTTCTGAAGGTGGGCACAGAGCCATAGGCCCAGGTTCCAGTAAAAACCACCCCAGTTTAA CGGCCAATACCGGGGGTGCTGTAGATGGACGTGTAAGTGGTACCACTACGGCAGAGGCAG AAAAGACTTCAGACCAAAACCTGTCCATTGAAGAGAGTGGTGTGGGAGTATTTCCCTCAC AGGATCCTGTTCAGCCTAGAATGCCTCCTCGCATTTACAACGAGAGCTTGGTTCCAGATG CCTATAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 265-397, gnl|bosTau2|chr19 (6988578-6988710) | |
| 265-397, gnl|canFam2|chr9 (40659596-40659744) | |
| 265-397, gnl|danRer3|chr15 (14694429-14694294) | |
| 265-397, gnl|dasNov1|scaffold_18554 (11858-11709) | |
| 265-397, gnl|echTel1|scaffold_277332 (17769-17620) | |
| 265-397, gnl|fr1|chrUn (15662876-15663019) | |
| 265-397, gnl|galGal2|chr19 (8172057-8172206) | |
| 265-397, gnl|hg17|chr17 (33020632-33020781) | |
| 265-397, gnl|Hg17|chr17 (33020772-33020640) | |
| 265-397, gnl|loxAfr1|scaffold_23399 (10322-10173) | |
| 265-397, gnl|mm7|chr11 (84048968-84048819) | |
| 265-397, gnl|Mm7|chr11 (84048826-84048958) | |
| 265-397, gnl|monDom2|scaffold_135 (862038-861889) | |
| 265-397, gnl|panTro1|chr19 (36199447-36199596) | |
| 265-397, gnl|rheMac2|chr16 (47589424-47589573) | |
| 265-397, gnl|rn3|chr10 (72279121-72278973) | |
| 265-397, gnl|tetNig1|chr16 (3885789-3885647) | |
| 398-503, gnl|bosTau2|chr19 (6989413-6989518) | |
| 398-503, gnl|canFam2|chr9 (40658418-40658556) | |
| 398-503, gnl|danRer3|chr15 (14694622-14694496) | |
| 398-503, gnl|dasNov1|scaffold_18554 (12634-12497) | |
| 398-503, gnl|echTel1|scaffold_277332 (19375-19237) | |
| 398-503, gnl|fr1|chrUn (15662528-15662648) | |
| 398-503, gnl|galGal2|chr19 (8171588-8171733) | |
| 398-503, gnl|hg17|chr17 (33019542-33019680) | |
| 398-503, gnl|Hg17|chr17 (33019651-33019546) | |
| 398-503, gnl|loxAfr1|scaffold_23399 (12494-12356) | |
| 398-503, gnl|mm7|chr11 (84051436-84051298) | |
| 398-503, gnl|Mm7|chr11 (84051325-84051430) | |
| 398-503, gnl|monDom2|scaffold_135 (863799-863662) | |
| 398-503, gnl|panTro1|chr19 (36198359-36198497) | |
| 398-503, gnl|rheMac2|chr16 (47588030-47588168) | |
| 398-503, gnl|rn3|chr10 (72282021-72281883) | |
| 398-503, gnl|tetNig1|chr16 (3886001-3885885) | |
| 613-826, gnl|bosTau2|chr19 (6993296-6993509) | |
| 613-826, gnl|canFam2|chr9 (40651352-40651629) | |
| 613-826, gnl|danRer3|chr15 (11834814-11835110) | |
| 613-826, gnl|dasNov1|scaffold_18554 (16885-16606) | |
| 613-826, gnl|echTel1|scaffold_310510 (71552-71818) | |
| 613-826, gnl|fr1|chrUn (15661628-15661897) | |
| 613-826, gnl|galGal2|chr19 (8169458-8169740) | |
| 613-826, gnl|hg17|chr17 (33013430-33013709) | |
| 613-826, gnl|Hg17|chr17 (33013646-33013433) | |
| 613-826, gnl|loxAfr1|scaffold_23399 (17777-17498) | |
| 613-826, gnl|mm7|chr11 (84055372-84055096) | |
| 613-826, gnl|Mm7|chr11 (84055154-84055367) | |
| 613-826, gnl|monDom2|scaffold_135 (868820-868539) | |
| 613-826, gnl|oryCun1|scaffold_195500 (37133-36853) | |
| 613-826, gnl|panTro1|chr19 (36192310-36192589) | |
| 613-826, gnl|rheMac2|chr16 (47581707-47581986) | |
| 613-826, gnl|rn3|chr10 (72286048-72285772) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 265-397, gnl|bosTau2|chr19 (6988578-6988710) | |
| 265-397, gnl|canFam2|chr9 (40659596-40659744) | |
| 265-397, gnl|danRer3|chr15 (14694429-14694294) | |
| 265-397, gnl|dasNov1|scaffold_18554 (11858-11709) | |
| 265-397, gnl|echTel1|scaffold_277332 (17769-17620) | |
| 265-397, gnl|fr1|chrUn (15662876-15663019) | |
| 265-397, gnl|galGal2|chr19 (8172057-8172206) | |
| 265-397, gnl|hg17|chr17 (33020632-33020781) | |
| 265-397, gnl|Hg17|chr17 (33020772-33020640) | |
| 265-397, gnl|loxAfr1|scaffold_23399 (10322-10173) | |
| 265-397, gnl|mm7|chr11 (84048968-84048819) | |
| 265-397, gnl|Mm7|chr11 (84048826-84048958) | |
| 265-397, gnl|monDom2|scaffold_135 (862038-861889) | |
| 265-397, gnl|panTro1|chr19 (36199447-36199596) | |
| 265-397, gnl|rheMac2|chr16 (47589424-47589573) | |
| 265-397, gnl|rn3|chr10 (72279121-72278973) | |
| 265-397, gnl|tetNig1|chr16 (3885789-3885647) | |
| 398-503, gnl|bosTau2|chr19 (6989413-6989518) | |
| 398-503, gnl|canFam2|chr9 (40658418-40658556) | |
| 398-503, gnl|danRer3|chr15 (14694622-14694496) | |
| 398-503, gnl|dasNov1|scaffold_18554 (12634-12497) | |
| 398-503, gnl|echTel1|scaffold_277332 (19375-19237) | |
| 398-503, gnl|fr1|chrUn (15662528-15662648) | |
| 398-503, gnl|galGal2|chr19 (8171588-8171733) | |
| 398-503, gnl|hg17|chr17 (33019542-33019680) | |
| 398-503, gnl|Hg17|chr17 (33019651-33019546) | |
| 398-503, gnl|loxAfr1|scaffold_23399 (12494-12356) | |
| 398-503, gnl|mm7|chr11 (84051436-84051298) | |
| 398-503, gnl|Mm7|chr11 (84051325-84051430) | |
| 398-503, gnl|monDom2|scaffold_135 (863799-863662) | |
| 398-503, gnl|panTro1|chr19 (36198359-36198497) | |
| 398-503, gnl|rheMac2|chr16 (47588030-47588168) | |
| 398-503, gnl|rn3|chr10 (72282021-72281883) | |
| 398-503, gnl|tetNig1|chr16 (3886001-3885885) | |
| 613-826, gnl|bosTau2|chr19 (6993296-6993509) | |
| 613-826, gnl|canFam2|chr9 (40651352-40651629) | |
| 613-826, gnl|danRer3|chr15 (11834814-11835110) | |
| 613-826, gnl|dasNov1|scaffold_18554 (16885-16606) | |
| 613-826, gnl|echTel1|scaffold_310510 (71552-71818) | |
| 613-826, gnl|fr1|chrUn (15661628-15661897) | |
| 613-826, gnl|galGal2|chr19 (8169458-8169740) | |
| 613-826, gnl|hg17|chr17 (33013430-33013709) | |
| 613-826, gnl|Hg17|chr17 (33013646-33013433) | |
| 613-826, gnl|loxAfr1|scaffold_23399 (17777-17498) | |
| 613-826, gnl|mm7|chr11 (84055372-84055096) | |
| 613-826, gnl|Mm7|chr11 (84055154-84055367) | |
| 613-826, gnl|monDom2|scaffold_135 (868820-868539) | |
| 613-826, gnl|oryCun1|scaffold_195500 (37133-36853) | |
| 613-826, gnl|panTro1|chr19 (36192310-36192589) | |
| 613-826, gnl|rheMac2|chr16 (47581707-47581986) | |
| 613-826, gnl|rn3|chr10 (72286048-72285772) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| med (0.116252) |