Ss1.1-Thy1-THY010103C12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGGGTCGCGGAAATTTGCACCCTTGGCCGGTCCCTCTTCTTTTCCGGCGGAGAGGTT AGTGCCACTGCCTTGTTCTGGGAGCTTGCACGGTCCCGGCATAACGCTCCCCGCCTTTGC TTCCCGCCGACCTGAACCTCTAGCGTCACAGGTTTCACCGGGAAATATGAGGCTGGCATC ACATTTTATGAAGATGGAAGATGTGATTTGACTGACGTTTGGTTGCTGTGTCGAGAAGAG TCTGAAGAACAGAGCTGAGAAAAAAGTTCAGAAGCTGTGACAATGATTCTTGGGAAAGAC AGCGGCTTGGACCAGGGTAGTGGCAGTGCTGGTGCTGAGGTCACACAAAGCCAGGAGGAT TTGCTGACACACGGCTTGGGATGTGGTAATGCCAGCCGGACTTCTCAGAGCCCTGGCCGG ATCTCACTGCATTTTATCAAAAACGTGTCAGTGCCAAAGACTTGTTCATCGAACATTGAA ACCACTTAAGGAACTTGAGACAACATGCAGCTCCCTCACCGAAAGTCAGAGCTTGGATAT GTTCTTTCCTGATACAGCGGCTGGTGGTTTGAATAAGTCCCGGATATTGGAAATGAACCA GAAAATAGCCAGTACAAGCGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGGGTCGCGGAAATTTGCACCCTTGGCCGGTCCCTCTTCTTTTCCGGCGGAGAGGTT AGTGCCACTGCCTTGTTCTGGGAGCTTGCACGGTCCCGGCATAACGCTCCCCGCCTTTGC TTCCCGCCGACCTGAACCTCTAGCGTCACAGGTTTCACCGGGAAATATGAGGCTGGCATC ACATTTTATGAAGATGGAAGATGTGATTTGACTGACGTTTGGTTGCTGTGTCGAGAAGAG TCTGAAGAACAGAGCTGAGAAAAAAGTTCAGAAGCTGTGACAATGATTCTTGGGAAAGAC AGCGGCTTGGACCAGGGTAGTGGCAGTGCTGGTGCTGAGGTCACACAAAGCCAGGAGGAT TTGCTGACACACGGCTTGGGATGTGGTAATGCCAGCCGGACTTCTCAGAGCCCTGGCCGG ATCTCACTGCATTTTATCAAAAACGTGTCAGTGCCAAAGACTTGTTCATCGAACATTGAA ACCACTTAAGGAACTTGAGACAACATGCAGCTCCCTCACCGAAAGTCAGAGCTTGGATAT GTTCTTTCCTGATACAGCGGCTGGTGGTTTGAATAAGTCCCGGATATTGGAAATGAACCA GAAAATAGCCAGTACAAGCGTCCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-118, + strand, RNAz p=0.566333 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-118, + strand, RNAz p=0.566333 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr9 (52814457-52814613) | |
| 1-163, gnl|Hg17|chr6 (151865321-151865160) | |
| 218-366, gnl|bosTau2|chr9 (52815883-52816034) | |
| 374-624, gnl|bosTau2|chr9 (52819238-52819491) | |
| 374-624, gnl|canFam2|chr1 (44838694-44839095) | |
| 374-624, gnl|canFam2|chr1 (44838660-44839084) | |
| 374-624, gnl|echTel1|scaffold_316242 (29332-28956) | |
| 374-624, gnl|echTel1|scaffold_316242 (29366-28955) | |
| 374-624, gnl|galGal2|chr3 (47854132-47854559) | |
| 374-624, gnl|hg17|chr14 (72604698-72605124) | |
| 374-624, gnl|hg17|chr6 (151858654-151859078) | |
| 374-624, gnl|Hg17|chr6 (151859075-151858822) | |
| 374-624, gnl|loxAfr1|scaffold_9373 (64177-63768) | |
| 374-624, gnl|loxAfr1|scaffold_9373 (64211-63787) | |
| 374-624, gnl|mm7|chr10 (5919877-5919485) | |
| 374-624, gnl|mm7|chr10 (5919911-5919484) | |
| 374-624, gnl|Mm7|chr10 (5919485-5919741) | |
| 374-624, gnl|monDom2|scaffold_0 (54508550-54508152) | |
| 374-624, gnl|monDom2|scaffold_0 (54508576-54508151) | |
| 374-624, gnl|panTro1|chr15 (72382791-72383220) | |
| 374-624, gnl|panTro1|chr5 (155365304-155365728) | |
| 374-624, gnl|rheMac2|chr4 (111637644-111637220) | |
| 374-624, gnl|rheMac2|chr7 (136179645-136180071) | |
| 374-624, gnl|rn3|chr1 (35134620-35135012) | |
| 374-624, gnl|rn3|chr1 (35134586-35135013) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr9 (52814457-52814613) | |
| 1-163, gnl|Hg17|chr6 (151865321-151865160) | |
| 218-366, gnl|bosTau2|chr9 (52815883-52816034) | |
| 374-624, gnl|bosTau2|chr9 (52819238-52819491) | |
| 374-624, gnl|canFam2|chr1 (44838694-44839095) | |
| 374-624, gnl|canFam2|chr1 (44838660-44839084) | |
| 374-624, gnl|echTel1|scaffold_316242 (29332-28956) | |
| 374-624, gnl|echTel1|scaffold_316242 (29366-28955) | |
| 374-624, gnl|galGal2|chr3 (47854132-47854559) | |
| 374-624, gnl|hg17|chr14 (72604698-72605124) | |
| 374-624, gnl|hg17|chr6 (151858654-151859078) | |
| 374-624, gnl|Hg17|chr6 (151859075-151858822) | |
| 374-624, gnl|loxAfr1|scaffold_9373 (64177-63768) | |
| 374-624, gnl|loxAfr1|scaffold_9373 (64211-63787) | |
| 374-624, gnl|mm7|chr10 (5919877-5919485) | |
| 374-624, gnl|mm7|chr10 (5919911-5919484) | |
| 374-624, gnl|Mm7|chr10 (5919485-5919741) | |
| 374-624, gnl|monDom2|scaffold_0 (54508550-54508152) | |
| 374-624, gnl|monDom2|scaffold_0 (54508576-54508151) | |
| 374-624, gnl|panTro1|chr15 (72382791-72383220) | |
| 374-624, gnl|panTro1|chr5 (155365304-155365728) | |
| 374-624, gnl|rheMac2|chr4 (111637644-111637220) | |
| 374-624, gnl|rheMac2|chr7 (136179645-136180071) | |
| 374-624, gnl|rn3|chr1 (35134620-35135012) | |
| 374-624, gnl|rn3|chr1 (35134586-35135013) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) |