Non-Coding RNA Search

Ss1.1-Thy1-THY010105D12.5

Sequence:


               
               TGGAAGGGGAACCGAGGCCCCCGGACTTTACGCGGCTGAGGGCAGCGCCGGTTCCCCGCG
GTCAAGATGCTGCAAAACGTGACTCCCCACAGCAAGCTCCCTGGGGAGGGGAATGCAGGG
TTACTGGGGCTGGGCCCAGAGGCAGCAGCGCCTGGGAAAAGGATTCGAAAGCCCTCTCTG
TTGTATGAGGGATTTGAGAGCCCTACAATGGCCTCAGTGCCGGCTTTGCAACTAACCCCT
GCCAACCCACCACCTCCAGAGGTGTCGAATCCCAAAAAGCCAGGACGGGTTACCAACCAG
CTACAGTACCTACACAAGGTGGTGATGAAGGCTTTGTGGAAGCATCAGTTCGCGTGGCCC
TTCCGGCAGCCTGTGGATGCTGTCAAACTGGGTCTGCCGGATTATCACAAAATTATAAAG
CAGCCAATGGATATGGGTACTATTAAGAGAAGACTTGAAAACAACTATTATTGGGCTGCA
TCAGAGTGTATGCAAGATTTCAATACCATGTTCACTAACTGTTACATCTACAACAAGGTG
AGTTTTAAGTCCTTCACTGCAGAGTTTCAGAGTGGTTAGGATCTAGAAAATCTGAGTTCC
AAAAGGTAGCACTGAAAACAGTGATGTGGCTTCAGAGATCCAGAGTTACGGAGATTTTTT
TTTTAAATAGAACACTCTTCATACTTGTGGCTGATGGCCCTATTTCTCAAAACTCTCCAG
AGACCTGGGTAGAGCAGAAACTATTTTTTTATCAGCTCTTTCTTCTGAACTTTATCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGGGGAACCGAGGCCCCCGGACTTTACGCGGCTGAGGGCAGCGCCGGTTCCCCGCG
GTCAAGATGCTGCAAAACGTGACTCCCCACAGCAAGCTCCCTGGGGAGGGGAATGCAGGG
TTACTGGGGCTGGGCCCAGAGGCAGCAGCGCCTGGGAAAAGGATTCGAAAGCCCTCTCTG
TTGTATGAGGGATTTGAGAGCCCTACAATGGCCTCAGTGCCGGCTTTGCAACTAACCCCT
GCCAACCCACCACCTCCAGAGGTGTCGAATCCCAAAAAGCCAGGACGGGTTACCAACCAG
CTACAGTACCTACACAAGGTGGTGATGAAGGCTTTGTGGAAGCATCAGTTCGCGTGGCCC
TTCCGGCAGCCTGTGGATGCTGTCAAACTGGGTCTGCCGGATTATCACAAAATTATAAAG
CAGCCAATGGATATGGGTACTATTAAGAGAAGACTTGAAAACAACTATTATTGGGCTGCA
TCAGAGTGTATGCAAGATTTCAATACCATGTTCACTAACTGTTACATCTACAACAAGGTG
AGTTTTAAGTCCTTCACTGCAGAGTTTCAGAGTGGTTAGGATCTAGAAAATCTGAGTTCC
AAAAGGTAGCACTGAAAACAGTGATGTGGCTTCAGAGATCCAGAGTTACGGAGATTTTTT
TTTTAAATAGAACACTCTTCATACTTGTGGCTGATGGCCCTATTTCTCAAAACTCTCCAG
AGACCTGGGTAGAGCAGAAACTATTTTTTTATCAGCTCTTTCTTCTGAACTTTATCCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-211, + strand, RNAz p=0.788495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-211, + strand, RNAz p=0.788495

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC063840, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC063840, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               93-400, gnl|bosTau2|chr23 (5656502-5656195)
               

               
               93-400, gnl|Hg17|chr6 (33050214-33050521)
               

               
               93-400, gnl|Mm7|chr17 (32197110-32196803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-400, gnl|bosTau2|chr23 (5656502-5656195)
               

               
               93-400, gnl|Hg17|chr6 (33050214-33050521)
               

               
               93-400, gnl|Mm7|chr17 (32197110-32196803)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	93-400, gnl\|bosTau2\|chr23 (5656502-5656195)
	93-400, gnl\|Hg17\|chr6 (33050214-33050521)
	93-400, gnl\|Mm7\|chr17 (32197110-32196803)