Ss1.1-Thy1-THY010109B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCCCAGGTTAATACAGAAGCTGAACCAGCAGACAATATTACAAGTTTCCTGTGGCAAC TGGCATTGCTTGGCTCTTGCGGCTGATGGTCAGTTCTTCACATGGGGCAAGAACAGCCAC GGGCAGCTGGGCCTGGGGAAGGAGTTCCCCTCCCAAGCCAGCCCGCAGAGAGTGAGGTCC CTGGAGGGCATCCCGCTGGCGCAGGTGGCTGCAGGAGGGGCCCACAGCTTTGCCCTGTCT CTCTCAGGAGCCGTTTTTGGCTGGGGGATGAATAACGCAGGGCAGCTGGGGCTCAGTGAC GAGGAAGACCGAGAGTCTCCCTGCCATGTGAAGCTCCTCCGAGCACAAAAAGTCGTCTAT ATCAGCTGTGGAGAAGAACATACAGCCGTTCTCACAAAAAGTGGAGGTGTGTTTACCTTT GGTGCTGGTTCCTGCGGGCAACTTGGCCATGATTCCATGAACGATGAGGTGAATCCGAGA AGAGTTCTGGAGCTGATGGGCAGTGAAGTCACTCAGATTGCTTGTGGCAGACAACACACT CTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTCGGCTGTGGAGCAAGAGGTCAA CTGGGAACTGGACACACTTGTAACGTGAAGTGCCCATCTCCTGTGAAGGGTTACTGGGCT GCCCACAGTGGCCAGCTTTCAGCCAGAGCTGATCGCTTCAAATATCATATTGTTAAGCAG ATCTTCTCTGGAGGAGACCAAACTTTTGTACTTTGCTCCAAATATGAGAATTCTTCTCCT GCTGTTGACTTCAGGACAATGAATCAAGCACATTACACCAGTTTAATAAATGATGAAACC ATAGCGGTTTGGAGACAAAAACTCGCAGAACACAACAATGCCAATACCATCAATGGTGTT GTTCAGATATTATCTTCTGCAGCCTGCTGGAATGGAAGTTTTCTCGAGAAAAAAATTGAT GAACATTTTAAAACAAGTCCCAAAATCTCTGGGATTGACCTGAACTCAACTCGAGTGTTA TTTGAGAAGTTAATGAACTCTCAGCACTCCGTGATTCTGGAACAGATCTTAAATAGCTTT GAAAGCTGCCTGATTCCTCAGTTGTCGAGTTCGCCGCCAGATGTCGAAGCCATGCGAATC TACTTGATACTCCCGGAGTTTCCCCTGCTTCAGGATTCCAAGTATTACATAACGCTGACT ATCCCCCTGGCTATGGCCATTCTGCGTCTGGATACAAACCCCAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCCCAGGTTAATACAGAAGCTGAACCAGCAGACAATATTACAAGTTTCCTGTGGCAAC TGGCATTGCTTGGCTCTTGCGGCTGATGGTCAGTTCTTCACATGGGGCAAGAACAGCCAC GGGCAGCTGGGCCTGGGGAAGGAGTTCCCCTCCCAAGCCAGCCCGCAGAGAGTGAGGTCC CTGGAGGGCATCCCGCTGGCGCAGGTGGCTGCAGGAGGGGCCCACAGCTTTGCCCTGTCT CTCTCAGGAGCCGTTTTTGGCTGGGGGATGAATAACGCAGGGCAGCTGGGGCTCAGTGAC GAGGAAGACCGAGAGTCTCCCTGCCATGTGAAGCTCCTCCGAGCACAAAAAGTCGTCTAT ATCAGCTGTGGAGAAGAACATACAGCCGTTCTCACAAAAAGTGGAGGTGTGTTTACCTTT GGTGCTGGTTCCTGCGGGCAACTTGGCCATGATTCCATGAACGATGAGGTGAATCCGAGA AGAGTTCTGGAGCTGATGGGCAGTGAAGTCACTCAGATTGCTTGTGGCAGACAACACACT CTAGCCTTCGTGCCTTCTTCTGGACTCATCTATGCATTCGGCTGTGGAGCAAGAGGTCAA CTGGGAACTGGACACACTTGTAACGTGAAGTGCCCATCTCCTGTGAAGGGTTACTGGGCT GCCCACAGTGGCCAGCTTTCAGCCAGAGCTGATCGCTTCAAATATCATATTGTTAAGCAG ATCTTCTCTGGAGGAGACCAAACTTTTGTACTTTGCTCCAAATATGAGAATTCTTCTCCT GCTGTTGACTTCAGGACAATGAATCAAGCACATTACACCAGTTTAATAAATGATGAAACC ATAGCGGTTTGGAGACAAAAACTCGCAGAACACAACAATGCCAATACCATCAATGGTGTT GTTCAGATATTATCTTCTGCAGCCTGCTGGAATGGAAGTTTTCTCGAGAAAAAAATTGAT GAACATTTTAAAACAAGTCCCAAAATCTCTGGGATTGACCTGAACTCAACTCGAGTGTTA TTTGAGAAGTTAATGAACTCTCAGCACTCCGTGATTCTGGAACAGATCTTAAATAGCTTT GAAAGCTGCCTGATTCCTCAGTTGTCGAGTTCGCCGCCAGATGTCGAAGCCATGCGAATC TACTTGATACTCCCGGAGTTTCCCCTGCTTCAGGATTCCAAGTATTACATAACGCTGACT ATCCCCCTGGCTATGGCCATTCTGCGTCTGGATACAAACCCCAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 85-243, + strand, RNAz p=0.993112 | |
| 85-243, - strand, RNAz p=0.993112 | |
| 85-227, + strand, RNAz p=0.875676 | |
| 85-227, - strand, RNAz p=0.875676 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 85-243, + strand, RNAz p=0.993112 | |
| 85-243, - strand, RNAz p=0.993112 | |
| 85-227, + strand, RNAz p=0.875676 | |
| 85-227, - strand, RNAz p=0.875676 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 85-307, gnl|bosTau2|chr6 (19470824-19470602) | |
| 85-307, gnl|canFam2|chr32 (14878953-14879197) | |
| 85-307, gnl|danRer3|chr10 (24186107-24186351) | |
| 85-307, gnl|dasNov1|scaffold_2058 (124784-125041) | |
| 85-307, gnl|echTel1|scaffold_321869 (110024-109768) | |
| 85-307, gnl|fr1|chrUn (214065182-214064941) | |
| 85-307, gnl|galGal2|chr4 (35533625-35533860) | |
| 85-307, gnl|hg17|chr4 (89931188-89931445) | |
| 85-307, gnl|Hg17|chr4 (89931197-89931419) | |
| 85-307, gnl|loxAfr1|scaffold_3727 (55530-55787) | |
| 85-307, gnl|mm7|chr6 (58824699-58824954) | |
| 85-307, gnl|Mm7|chr6 (58824708-58824930) | |
| 85-307, gnl|monDom2|scaffold_32 (21206321-21206064) | |
| 85-307, gnl|oryCun1|scaffold_118155 (80-310) | |
| 85-307, gnl|panTro1|chr3 (105664699-105664894) | |
| 85-307, gnl|rheMac2|chr5 (81619467-81619724) | |
| 85-307, gnl|rn3|chr4 (87994206-87994461) | |
| 85-307, gnl|tetNig1|chr18 (6542269-6542500) | |
| 85-307, gnl|xenTro1|scaffold_424 (532177-532419) | |
| 513-691, gnl|bosTau2|chr6 (19466721-19466542) | |
| 513-691, gnl|Hg17|chr4 (89934189-89934364) | |
| 513-691, gnl|Mm7|chr6 (58828357-58828528) | |
| 767-903, gnl|bosTau2|chr6 (19457569-19457433) | |
| 767-903, gnl|Hg17|chr4 (89940758-89940894) | |
| 767-903, gnl|Mm7|chr6 (58836756-58836892) | |
| 1039-1248, gnl|bosTau2|chr6 (19449268-19449060) | |
| 1039-1248, gnl|Hg17|chr4 (89946195-89946403) | |
| 1039-1248, gnl|Mm7|chr6 (58842300-58842509) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-307, gnl|bosTau2|chr6 (19470824-19470602) | |
| 85-307, gnl|canFam2|chr32 (14878953-14879197) | |
| 85-307, gnl|danRer3|chr10 (24186107-24186351) | |
| 85-307, gnl|dasNov1|scaffold_2058 (124784-125041) | |
| 85-307, gnl|echTel1|scaffold_321869 (110024-109768) | |
| 85-307, gnl|fr1|chrUn (214065182-214064941) | |
| 85-307, gnl|galGal2|chr4 (35533625-35533860) | |
| 85-307, gnl|hg17|chr4 (89931188-89931445) | |
| 85-307, gnl|Hg17|chr4 (89931197-89931419) | |
| 85-307, gnl|loxAfr1|scaffold_3727 (55530-55787) | |
| 85-307, gnl|mm7|chr6 (58824699-58824954) | |
| 85-307, gnl|Mm7|chr6 (58824708-58824930) | |
| 85-307, gnl|monDom2|scaffold_32 (21206321-21206064) | |
| 85-307, gnl|oryCun1|scaffold_118155 (80-310) | |
| 85-307, gnl|panTro1|chr3 (105664699-105664894) | |
| 85-307, gnl|rheMac2|chr5 (81619467-81619724) | |
| 85-307, gnl|rn3|chr4 (87994206-87994461) | |
| 85-307, gnl|tetNig1|chr18 (6542269-6542500) | |
| 85-307, gnl|xenTro1|scaffold_424 (532177-532419) | |
| 513-691, gnl|bosTau2|chr6 (19466721-19466542) | |
| 513-691, gnl|Hg17|chr4 (89934189-89934364) | |
| 513-691, gnl|Mm7|chr6 (58828357-58828528) | |
| 767-903, gnl|bosTau2|chr6 (19457569-19457433) | |
| 767-903, gnl|Hg17|chr4 (89940758-89940894) | |
| 767-903, gnl|Mm7|chr6 (58836756-58836892) | |
| 1039-1248, gnl|bosTau2|chr6 (19449268-19449060) | |
| 1039-1248, gnl|Hg17|chr4 (89946195-89946403) | |
| 1039-1248, gnl|Mm7|chr6 (58842300-58842509) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| pty (0.142714) |