Ss1.1-Thy1-THY010112D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTACCGGGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGA GGTTATCCAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAA ATCCACAAGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGA CAATGGCACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAG TAAACTGCAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGC TTTGGCCAGCATAAGCCATGTGGCACACGTCACCATTACAACCAAAACAGCTGATGGGAA GTGCGCATACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGC AGGCAATCAAGGAACCCAGATCACGGTGGAGGACCTTTTTTACAACATATCCACGAGAAG GAAGGCTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTACCGGGAGTTATCCGGCGGTTGGACGAGACAGTGGTGAACCGCATCGCGGCAGGGGA GGTTATCCAGCGGCCGGCTAATGCCATTAAGGAGATGATTGAGAACTGTTTAGATGCAAA ATCCACAAGTATTCAAGTGGTGGTTAAAGAGGGAGGCCTGAAGTTGATTCAGATCCAAGA CAATGGCACTGGGATCAGGAAAGAAGATCTGGATATTGTGTGTGAGAGGTTCACCACAAG TAAACTGCAGTCCTTTGAGGATTTAGCTCATATTTCTACCTATGGCTTTCGGGGAGAGGC TTTGGCCAGCATAAGCCATGTGGCACACGTCACCATTACAACCAAAACAGCTGATGGGAA GTGCGCATACAGAGCACATTACTCAGATGGAAAGCTGAAAGCTCCTCCTAAACCATGTGC AGGCAATCAAGGAACCCAGATCACGGTGGAGGACCTTTTTTACAACATATCCACGAGAAG GAAGGCTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-108, - strand, RNAz p=0.509626 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-108, - strand, RNAz p=0.509626 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 2-108, gnl|bosTau2|chr22 (8074979-8075085) | |
| 2-108, gnl|canFam2|chr23 (9900044-9900161) | |
| 2-108, gnl|danRer3|chr13 (43042457-43042566) | |
| 2-108, gnl|dasNov1|scaffold_129440 (282-399) | |
| 2-108, gnl|echTel1|scaffold_324029 (157090-156973) | |
| 2-108, gnl|fr1|chrUn (200055811-200055921) | |
| 2-108, gnl|hg17|chr3 (37010052-37010169) | |
| 2-108, gnl|Hg17|chr3 (37010052-37010158) | |
| 2-108, gnl|loxAfr1|scaffold_81509 (6581-6698) | |
| 2-108, gnl|mm7|chr9 (110969219-110969102) | |
| 2-108, gnl|Mm7|chr9 (110969217-110969111) | |
| 2-108, gnl|monDom2|scaffold_128 (2007305-2007174) | |
| 2-108, gnl|oryCun1|scaffold_190552 (7468-7585) | |
| 2-108, gnl|panTro1|chr2_random (34036431-34036314) | |
| 2-108, gnl|rheMac2|chr2 (99561558-99561441) | |
| 2-108, gnl|rn3|chr8 (115672919-115672802) | |
| 2-108, gnl|tetNig1|chr17 (1021312-1021422) | |
| 2-108, gnl|xenTro1|scaffold_26 (3409353-3409470) | |
| 199-299, gnl|bosTau2|chr22 (8079390-8079490) | |
| 199-299, gnl|Hg17|chr3 (37017449-37017549) | |
| 199-299, gnl|Mm7|chr9 (110962668-110962568) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-108, gnl|bosTau2|chr22 (8074979-8075085) | |
| 2-108, gnl|canFam2|chr23 (9900044-9900161) | |
| 2-108, gnl|danRer3|chr13 (43042457-43042566) | |
| 2-108, gnl|dasNov1|scaffold_129440 (282-399) | |
| 2-108, gnl|echTel1|scaffold_324029 (157090-156973) | |
| 2-108, gnl|fr1|chrUn (200055811-200055921) | |
| 2-108, gnl|hg17|chr3 (37010052-37010169) | |
| 2-108, gnl|Hg17|chr3 (37010052-37010158) | |
| 2-108, gnl|loxAfr1|scaffold_81509 (6581-6698) | |
| 2-108, gnl|mm7|chr9 (110969219-110969102) | |
| 2-108, gnl|Mm7|chr9 (110969217-110969111) | |
| 2-108, gnl|monDom2|scaffold_128 (2007305-2007174) | |
| 2-108, gnl|oryCun1|scaffold_190552 (7468-7585) | |
| 2-108, gnl|panTro1|chr2_random (34036431-34036314) | |
| 2-108, gnl|rheMac2|chr2 (99561558-99561441) | |
| 2-108, gnl|rn3|chr8 (115672919-115672802) | |
| 2-108, gnl|tetNig1|chr17 (1021312-1021422) | |
| 2-108, gnl|xenTro1|scaffold_26 (3409353-3409470) | |
| 199-299, gnl|bosTau2|chr22 (8079390-8079490) | |
| 199-299, gnl|Hg17|chr3 (37017449-37017549) | |
| 199-299, gnl|Mm7|chr9 (110962668-110962568) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ebs (0.118301) |