Ss1.1-Thy1-THY010113B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGCAGCCGCTGGCGCCCGAGGGGCCGAGCGAGATTGTAAACCATGGCTGTGTGGATA CAAGCCCAGCAGCTCCAAGGAGATGCCCTTCATCAGATGCAAGCACTGTATGGTCAGCAT TTCCCCATCGAGGTGCGGCATTATTTATCCCAGTGGATTGAAAGCCAAGCTTGGGACTCA ATAGATCTTGATAATCCACAGGAGAACATTAAGGCCACCCAGCTCCTGGAGGGCCTGGTG CAGGAGCTGCAGAAGAAGGCAGAGCACCAAGTGGGGGAAGATGGGTTCTTACTGAAGATC AAGCTGGGGCACTACGCCACGCAGCTCCAGAACACGTATGACCGCTGCCCCATGGAGCTG GTCCGCTGCATCCGCCATATTCTGTACAACGAACAGAGGCTGGTCCGAGAAGCCAACAAT GGTACTTCTCCAGCTGGAAGTCTCGCTGATGCCATGTCCCAGAAACACCTTCAGATCAAC CAGACCTTTGAGGAGCTGCGACTGGTCACGCAGGACACGGAGAATGAGTTGAAGAAGCTG CAGCAGACTCAAGAGTACTTCATCATCCAGTATCAAGAGAGCCTGAGGATCCAGGCTCAG TTTGCCCAGCTGGCCCAGCTGAACCCCCAGGAGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGCAGCCGCTGGCGCCCGAGGGGCCGAGCGAGATTGTAAACCATGGCTGTGTGGATA CAAGCCCAGCAGCTCCAAGGAGATGCCCTTCATCAGATGCAAGCACTGTATGGTCAGCAT TTCCCCATCGAGGTGCGGCATTATTTATCCCAGTGGATTGAAAGCCAAGCTTGGGACTCA ATAGATCTTGATAATCCACAGGAGAACATTAAGGCCACCCAGCTCCTGGAGGGCCTGGTG CAGGAGCTGCAGAAGAAGGCAGAGCACCAAGTGGGGGAAGATGGGTTCTTACTGAAGATC AAGCTGGGGCACTACGCCACGCAGCTCCAGAACACGTATGACCGCTGCCCCATGGAGCTG GTCCGCTGCATCCGCCATATTCTGTACAACGAACAGAGGCTGGTCCGAGAAGCCAACAAT GGTACTTCTCCAGCTGGAAGTCTCGCTGATGCCATGTCCCAGAAACACCTTCAGATCAAC CAGACCTTTGAGGAGCTGCGACTGGTCACGCAGGACACGGAGAATGAGTTGAAGAAGCTG CAGCAGACTCAAGAGTACTTCATCATCCAGTATCAAGAGAGCCTGAGGATCCAGGCTCAG TTTGCCCAGCTGGCCCAGCTGAACCCCCAGGAGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 170-288, + strand, RNAz p=0.719632 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 170-288, + strand, RNAz p=0.719632 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 170-330, gnl|bosTau2|chr19 (36791839-36791999) | |
| 170-330, gnl|canFam2|chr9 (23954040-23953851) | |
| 170-330, gnl|danRer3|chr3 (7267771-7267934) | |
| 170-330, gnl|dasNov1|scaffold_53324 (8892-8704) | |
| 170-330, gnl|echTel1|scaffold_319035 (173235-173428) | |
| 170-330, gnl|fr1|chrUn (96843229-96843065) | |
| 170-330, gnl|galGal2|chr27_random (293234-293416) | |
| 170-330, gnl|hg17|chr17 (37695404-37695593) | |
| 170-330, gnl|Hg17|chr17 (37695406-37695566) | |
| 170-330, gnl|loxAfr1|scaffold_72222 (4545-4356) | |
| 170-330, gnl|mm7|chr11 (100970754-100970944) | |
| 170-330, gnl|Mm7|chr11 (100970756-100970916) | |
| 170-330, gnl|monDom2|scaffold_18 (52646689-52646879) | |
| 170-330, gnl|oryCun1|scaffold_192242 (15092-15281) | |
| 170-330, gnl|panTro1|chr19 (40898619-40898808) | |
| 170-330, gnl|rheMac2|chr16 (52400564-52400753) | |
| 170-330, gnl|rn3|chr10 (89810972-89811160) | |
| 170-330, gnl|tetNig1|chr3 (12643466-12643635) | |
| 170-330, gnl|xenTro1|scaffold_1822 (36664-36494) | |
| 421-600, gnl|bosTau2|chr19 (36794334-36794513) | |
| 421-600, gnl|canFam2|chr9 (23950339-23950143) | |
| 421-600, gnl|danRer3|chr3 (7274420-7274612) | |
| 421-600, gnl|dasNov1|scaffold_10064 (24495-24694) | |
| 421-600, gnl|echTel1|scaffold_319035 (177904-178099) | |
| 421-600, gnl|fr1|chrUn (96841256-96841059) | |
| 421-600, gnl|galGal2|chr27_random (293747-293944) | |
| 421-600, gnl|hg17|chr17 (37701145-37701345) | |
| 421-600, gnl|Hg17|chr17 (37701163-37701341) | |
| 421-600, gnl|loxAfr1|scaffold_72222 (308-108) | |
| 421-600, gnl|mm7|chr11 (100974351-100974552) | |
| 421-600, gnl|Mm7|chr11 (100974370-100974550) | |
| 421-600, gnl|monDom2|scaffold_18 (52648927-52649127) | |
| 421-600, gnl|oryCun1|scaffold_194510 (5878-5687) | |
| 421-600, gnl|panTro1|chr19 (40903977-40904177) | |
| 421-600, gnl|rheMac2|chr16 (52406723-52406923) | |
| 421-600, gnl|rn3|chr10 (89814599-89814799) | |
| 421-600, gnl|tetNig1|chr3 (12645399-12645581) | |
| 421-600, gnl|xenTro1|scaffold_1822 (33627-33436) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-330, gnl|bosTau2|chr19 (36791839-36791999) | |
| 170-330, gnl|canFam2|chr9 (23954040-23953851) | |
| 170-330, gnl|danRer3|chr3 (7267771-7267934) | |
| 170-330, gnl|dasNov1|scaffold_53324 (8892-8704) | |
| 170-330, gnl|echTel1|scaffold_319035 (173235-173428) | |
| 170-330, gnl|fr1|chrUn (96843229-96843065) | |
| 170-330, gnl|galGal2|chr27_random (293234-293416) | |
| 170-330, gnl|hg17|chr17 (37695404-37695593) | |
| 170-330, gnl|Hg17|chr17 (37695406-37695566) | |
| 170-330, gnl|loxAfr1|scaffold_72222 (4545-4356) | |
| 170-330, gnl|mm7|chr11 (100970754-100970944) | |
| 170-330, gnl|Mm7|chr11 (100970756-100970916) | |
| 170-330, gnl|monDom2|scaffold_18 (52646689-52646879) | |
| 170-330, gnl|oryCun1|scaffold_192242 (15092-15281) | |
| 170-330, gnl|panTro1|chr19 (40898619-40898808) | |
| 170-330, gnl|rheMac2|chr16 (52400564-52400753) | |
| 170-330, gnl|rn3|chr10 (89810972-89811160) | |
| 170-330, gnl|tetNig1|chr3 (12643466-12643635) | |
| 170-330, gnl|xenTro1|scaffold_1822 (36664-36494) | |
| 421-600, gnl|bosTau2|chr19 (36794334-36794513) | |
| 421-600, gnl|canFam2|chr9 (23950339-23950143) | |
| 421-600, gnl|danRer3|chr3 (7274420-7274612) | |
| 421-600, gnl|dasNov1|scaffold_10064 (24495-24694) | |
| 421-600, gnl|echTel1|scaffold_319035 (177904-178099) | |
| 421-600, gnl|fr1|chrUn (96841256-96841059) | |
| 421-600, gnl|galGal2|chr27_random (293747-293944) | |
| 421-600, gnl|hg17|chr17 (37701145-37701345) | |
| 421-600, gnl|Hg17|chr17 (37701163-37701341) | |
| 421-600, gnl|loxAfr1|scaffold_72222 (308-108) | |
| 421-600, gnl|mm7|chr11 (100974351-100974552) | |
| 421-600, gnl|Mm7|chr11 (100974370-100974550) | |
| 421-600, gnl|monDom2|scaffold_18 (52648927-52649127) | |
| 421-600, gnl|oryCun1|scaffold_194510 (5878-5687) | |
| 421-600, gnl|panTro1|chr19 (40903977-40904177) | |
| 421-600, gnl|rheMac2|chr16 (52406723-52406923) | |
| 421-600, gnl|rn3|chr10 (89814599-89814799) | |
| 421-600, gnl|tetNig1|chr3 (12645399-12645581) | |
| 421-600, gnl|xenTro1|scaffold_1822 (33627-33436) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) |