Non-Coding RNA Search

Ss1.1-Thy1-THY010116C07.5

Sequence:


               
               CGGTCGGAATCCCAGCACTGTTGGCTATGGATGCCGCCTTCTCCCTGCCCTACGCCCAGC
TCCAGGCCATGCCCAGGCTGGCGGCGTGCTGTACCAGCCCTCCGGCCCAGCCAGCTTCGC
GGGCACCTTCAGCCCGGCGGGCTCGGTGGAGGGCTCCCCCATGCACACCGTGTACATGAG
CCAGCCCGCCCCGGCCGCCGGCGGCCCCTACCCGAGCCTGCCTGGAGCCGCAGCAGACCC
CAGCATGGTGGGCGCCTACATGTACCCGGCAGGGGCCACAGGCGCACAGACGGCCCCCCC
AGGCCCTGCCGGGCCCACCGCCAGCCCGGCCTACTCGTCCTACCAGCCCAGCCCCGCGCA
GGCCTACCAGAACGTGGCCTCGCAGCCTCCGCAGAGCCTCCCAGCCGTCTCCCAGCCCCC
GCAGGCCGGCGCCCTGGGCTACGTCGGGGGCCAGGCGGTGTCCGTGGGCTACCAGCCCTA
CGGCATGCAGGGTCTCTTGACTGCCCTCCCCGGCCAGGACGCGCCTCTGCCGCCCCCGCA
GCAGCCCTACCTCACAGGGCAGCAGCCCGTGTACCAGCAGATGGCACCCTCCGGAGGCCC
TCCCCAGCAGCAGCCCCCTGTGGCCCAGCAGCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTCGGAATCCCAGCACTGTTGGCTATGGATGCCGCCTTCTCCCTGCCCTACGCCCAGC
TCCAGGCCATGCCCAGGCTGGCGGCGTGCTGTACCAGCCCTCCGGCCCAGCCAGCTTCGC
GGGCACCTTCAGCCCGGCGGGCTCGGTGGAGGGCTCCCCCATGCACACCGTGTACATGAG
CCAGCCCGCCCCGGCCGCCGGCGGCCCCTACCCGAGCCTGCCTGGAGCCGCAGCAGACCC
CAGCATGGTGGGCGCCTACATGTACCCGGCAGGGGCCACAGGCGCACAGACGGCCCCCCC
AGGCCCTGCCGGGCCCACCGCCAGCCCGGCCTACTCGTCCTACCAGCCCAGCCCCGCGCA
GGCCTACCAGAACGTGGCCTCGCAGCCTCCGCAGAGCCTCCCAGCCGTCTCCCAGCCCCC
GCAGGCCGGCGCCCTGGGCTACGTCGGGGGCCAGGCGGTGTCCGTGGGCTACCAGCCCTA
CGGCATGCAGGGTCTCTTGACTGCCCTCCCCGGCCAGGACGCGCCTCTGCCGCCCCCGCA
GCAGCCCTACCTCACAGGGCAGCAGCCCGTGTACCAGCAGATGGCACCCTCCGGAGGCCC
TCCCCAGCAGCAGCCCCCTGTGGCCCAGCAGCCGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               56-173, - strand, RNAz p=0.599908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-173, - strand, RNAz p=0.599908

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               56-236, gnl|bosTau2|chr19 (45288311-45288492)
               

               
               56-236, gnl|canFam2|chr9 (3490606-3490419)
               

               
               56-236, gnl|danRer3|chrUn (153010722-153010901)
               

               
               56-236, gnl|fr1|chrUn (127529394-127529587)
               

               
               56-236, gnl|galGal2|chr3_random (632294-632484)
               

               
               56-236, gnl|hg17|chr17 (77274254-77274438)
               

               
               56-236, gnl|Hg17|chr17 (77274255-77274433)
               

               
               56-236, gnl|loxAfr1|scaffold_179649 (1687-1502)
               

               
               56-236, gnl|mm7|chr11 (120589064-120589248)
               

               
               56-236, gnl|Mm7|chr11 (120589065-120589243)
               

               
               56-236, gnl|monDom2|scaffold_18 (14442781-14442968)
               

               
               56-236, gnl|panTro1|chr19 (81010637-81010821)
               

               
               56-236, gnl|rheMac2|chr16 (77172183-77172367)
               

               
               56-236, gnl|tetNig1|chr3 (10838510-10838703)
               

               
               56-236, gnl|xenTro1|scaffold_413 (1081410-1081578)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-236, gnl|bosTau2|chr19 (45288311-45288492)
               

               
               56-236, gnl|canFam2|chr9 (3490606-3490419)
               

               
               56-236, gnl|danRer3|chrUn (153010722-153010901)
               

               
               56-236, gnl|fr1|chrUn (127529394-127529587)
               

               
               56-236, gnl|galGal2|chr3_random (632294-632484)
               

               
               56-236, gnl|hg17|chr17 (77274254-77274438)
               

               
               56-236, gnl|Hg17|chr17 (77274255-77274433)
               

               
               56-236, gnl|loxAfr1|scaffold_179649 (1687-1502)
               

               
               56-236, gnl|mm7|chr11 (120589064-120589248)
               

               
               56-236, gnl|Mm7|chr11 (120589065-120589243)
               

               
               56-236, gnl|monDom2|scaffold_18 (14442781-14442968)
               

               
               56-236, gnl|panTro1|chr19 (81010637-81010821)
               

               
               56-236, gnl|rheMac2|chr16 (77172183-77172367)
               

               
               56-236, gnl|tetNig1|chr3 (10838510-10838703)
               

               
               56-236, gnl|xenTro1|scaffold_413 (1081410-1081578)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	56-236, gnl\|bosTau2\|chr19 (45288311-45288492)
	56-236, gnl\|canFam2\|chr9 (3490606-3490419)
	56-236, gnl\|danRer3\|chrUn (153010722-153010901)
	56-236, gnl\|fr1\|chrUn (127529394-127529587)
	56-236, gnl\|galGal2\|chr3_random (632294-632484)
	56-236, gnl\|hg17\|chr17 (77274254-77274438)
	56-236, gnl\|Hg17\|chr17 (77274255-77274433)
	56-236, gnl\|loxAfr1\|scaffold_179649 (1687-1502)
	56-236, gnl\|mm7\|chr11 (120589064-120589248)
	56-236, gnl\|Mm7\|chr11 (120589065-120589243)
	56-236, gnl\|monDom2\|scaffold_18 (14442781-14442968)
	56-236, gnl\|panTro1\|chr19 (81010637-81010821)
	56-236, gnl\|rheMac2\|chr16 (77172183-77172367)
	56-236, gnl\|tetNig1\|chr3 (10838510-10838703)
	56-236, gnl\|xenTro1\|scaffold_413 (1081410-1081578)