Ss1.1-Thy1-THY010119C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCGGTCGGAATTCTCAGCACGTGGCCTCGGACTCAGTCCTCTTAGGAACACGAGGGAG TGCTTCATCTTTGTAAGTCAAAAGAATGAGAGGTTTCTTTTTCTTTTGAGGTTGCACTTT TTTAATGTATTTTATATCCCTTGTCTTCTCTGGCTCAAGCTGGCTCTTGGGCCAGAGCAG ATGTTAAGTCTCAGACTCCTCAGAATAGCAGTTGTTCCTAAGCATCCCTTTTTGCTTCTT TGTGTCTCACATGGTGACCTGTAGGTCACCCATTCCTCTCCCGTGACTTTTGATGTAGAA GAGCTTGTGTTTCAAATGGGTTTGGTTTTCTTAACGTCACACTGGGTTGGTGGAAGGAGG TTAAATGGGATCTCAGGGGGTCCCCCCACCCCCCGCCCCTGGGGGCGGGGGGGTAGGTTT CAACAGATGGAAGTTAATTGTCTCTTGAGAAGAGAGGAAGCTATTGAGCTTTCATCTGGC CCCGTCCGCTGCCCCTATTCTGCCTGTTAGCAGAGAGCAAGCGTCCACTCCCGGCCACTG TGCCCCCACCCAGGACCAAAGGCCAACTTAGTTCAGTGCAAAGTCATAAAGGAATATTCC GTTATTCCCTCCTTCCTGGTACTGGAGGAACCATTGGCCTTCTCTCTTTCAAAATTGCCC AAGGCTTGTGCAGAGGGTTGTTAGAATCCAGAAAGAAATACGTCCTAATCAACACAAATC TCATTACCACATAAAAACCATCAGATCCTAGTGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCGGTCGGAATTCTCAGCACGTGGCCTCGGACTCAGTCCTCTTAGGAACACGAGGGAG TGCTTCATCTTTGTAAGTCAAAAGAATGAGAGGTTTCTTTTTCTTTTGAGGTTGCACTTT TTTAATGTATTTTATATCCCTTGTCTTCTCTGGCTCAAGCTGGCTCTTGGGCCAGAGCAG ATGTTAAGTCTCAGACTCCTCAGAATAGCAGTTGTTCCTAAGCATCCCTTTTTGCTTCTT TGTGTCTCACATGGTGACCTGTAGGTCACCCATTCCTCTCCCGTGACTTTTGATGTAGAA GAGCTTGTGTTTCAAATGGGTTTGGTTTTCTTAACGTCACACTGGGTTGGTGGAAGGAGG TTAAATGGGATCTCAGGGGGTCCCCCCACCCCCCGCCCCTGGGGGCGGGGGGGTAGGTTT CAACAGATGGAAGTTAATTGTCTCTTGAGAAGAGAGGAAGCTATTGAGCTTTCATCTGGC CCCGTCCGCTGCCCCTATTCTGCCTGTTAGCAGAGAGCAAGCGTCCACTCCCGGCCACTG TGCCCCCACCCAGGACCAAAGGCCAACTTAGTTCAGTGCAAAGTCATAAAGGAATATTCC GTTATTCCCTCCTTCCTGGTACTGGAGGAACCATTGGCCTTCTCTCTTTCAAAATTGCCC AAGGCTTGTGCAGAGGGTTGTTAGAATCCAGAAAGAAATACGTCCTAATCAACACAAATC TCATTACCACATAAAAACCATCAGATCCTAGTGCTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 94-206, - strand, RNAz p=0.999973 | |
| 129-222, - strand, RNAz p=0.528445 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 94-206, - strand, RNAz p=0.999973 | |
| 129-222, - strand, RNAz p=0.528445 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 94-376, gnl|bosTau2|chr5 (14339446-14339159) | |
| 94-376, gnl|dasNov1|scaffold_5540 (20529-20978) | |
| 94-376, gnl|echTel1|scaffold_320287 (93858-94289) | |
| 94-376, gnl|hg17|chr8 (102935052-102935506) | |
| 94-376, gnl|Hg17|chr8 (102935507-102935235) | |
| 94-376, gnl|loxAfr1|scaffold_2181 (105067-105505) | |
| 94-376, gnl|mm7|chr15 (37645082-37645508) | |
| 94-376, gnl|Mm7|chr15 (37645508-37645262) | |
| 94-376, gnl|monDom2|scaffold_3 (61518541-61518072) | |
| 94-376, gnl|panTro1|chr7 (105286369-105286823) | |
| 94-376, gnl|rheMac2|chr8 (104362993-104363449) | |
| 94-376, gnl|rn3|chr7 (73056775-73057204) | |
| 412-542, gnl|bosTau2|chr5 (14339154-14339025) | |
| 412-542, gnl|dasNov1|scaffold_5540 (20529-20978) | |
| 412-542, gnl|echTel1|scaffold_320287 (93858-94289) | |
| 412-542, gnl|hg17|chr8 (102935052-102935506) | |
| 412-542, gnl|Hg17|chr8 (102935225-102935104) | |
| 412-542, gnl|loxAfr1|scaffold_2181 (105067-105505) | |
| 412-542, gnl|mm7|chr15 (37645082-37645508) | |
| 412-542, gnl|monDom2|scaffold_3 (61518541-61518072) | |
| 412-542, gnl|panTro1|chr7 (105286369-105286823) | |
| 412-542, gnl|rheMac2|chr8 (104362993-104363449) | |
| 412-542, gnl|rn3|chr7 (73056775-73057204) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-376, gnl|bosTau2|chr5 (14339446-14339159) | |
| 94-376, gnl|dasNov1|scaffold_5540 (20529-20978) | |
| 94-376, gnl|echTel1|scaffold_320287 (93858-94289) | |
| 94-376, gnl|hg17|chr8 (102935052-102935506) | |
| 94-376, gnl|Hg17|chr8 (102935507-102935235) | |
| 94-376, gnl|loxAfr1|scaffold_2181 (105067-105505) | |
| 94-376, gnl|mm7|chr15 (37645082-37645508) | |
| 94-376, gnl|Mm7|chr15 (37645508-37645262) | |
| 94-376, gnl|monDom2|scaffold_3 (61518541-61518072) | |
| 94-376, gnl|panTro1|chr7 (105286369-105286823) | |
| 94-376, gnl|rheMac2|chr8 (104362993-104363449) | |
| 94-376, gnl|rn3|chr7 (73056775-73057204) | |
| 412-542, gnl|bosTau2|chr5 (14339154-14339025) | |
| 412-542, gnl|dasNov1|scaffold_5540 (20529-20978) | |
| 412-542, gnl|echTel1|scaffold_320287 (93858-94289) | |
| 412-542, gnl|hg17|chr8 (102935052-102935506) | |
| 412-542, gnl|Hg17|chr8 (102935225-102935104) | |
| 412-542, gnl|loxAfr1|scaffold_2181 (105067-105505) | |
| 412-542, gnl|mm7|chr15 (37645082-37645508) | |
| 412-542, gnl|monDom2|scaffold_3 (61518541-61518072) | |
| 412-542, gnl|panTro1|chr7 (105286369-105286823) | |
| 412-542, gnl|rheMac2|chr8 (104362993-104363449) | |
| 412-542, gnl|rn3|chr7 (73056775-73057204) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |