Non-Coding RNA Search

Ss1.1-Thy1-THY010119G02.5

Sequence:


               
               AAAAGACCGAAAAAAAAAAAAAGATACTGATTTGTAATGAAATTGCATAAATGCTGCATC
TTCTATTGGATTGCAATTAAGTTTGTATTCTTCAAAGCACCTAACATGGTATGAGGCTAA
TAATAATAATAATAATAATAATAATAAATAATAGATCTACCACCAATTGAGTGCTTACAT
GTGCCAGGAACTCTGTTAAGCACTTTATGGACATCACAACTCACATCACATCATAGCTGT
TTCTTGAATGCATGGTACTAGTCCATATGGAACAATGCATAGTTGTTTTTCTACTGCTTA
TGGGAACCATCCCAGCAGAGAATCTGAAGTCATTGCTAGTGGTGGGACTGTGCAGCCATG
GACAGGGTAGCAGCCAGGAAACACTAGTTGATGCTCAAACACATACCAAGGTCATGGGCC
CTTGGATCACATCCTGGTTCTCCATTTACCAACCTTGGCAGGTTTGTGCTTATGTTCTTC
ATCGACTAGGAGATGATAATTCATCTTAAGTAAAAGGAGACAGTGTGCTAAGTACCTACG
ACAGCACTGAGTCTATCGTAGGGACTCAGTCAATAGTAGCTCTTCTTAGTATTATACGTA
AGGCACAGCGCTGAGTACCATGAGGTACAGAAGTAAGCAGATTAGAGTGGCGAATCTTGT
CCCTCCATCCGAAGGCAGAAAAGTCTGAATCCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGACCGAAAAAAAAAAAAAGATACTGATTTGTAATGAAATTGCATAAATGCTGCATC
TTCTATTGGATTGCAATTAAGTTTGTATTCTTCAAAGCACCTAACATGGTATGAGGCTAA
TAATAATAATAATAATAATAATAATAAATAATAGATCTACCACCAATTGAGTGCTTACAT
GTGCCAGGAACTCTGTTAAGCACTTTATGGACATCACAACTCACATCACATCATAGCTGT
TTCTTGAATGCATGGTACTAGTCCATATGGAACAATGCATAGTTGTTTTTCTACTGCTTA
TGGGAACCATCCCAGCAGAGAATCTGAAGTCATTGCTAGTGGTGGGACTGTGCAGCCATG
GACAGGGTAGCAGCCAGGAAACACTAGTTGATGCTCAAACACATACCAAGGTCATGGGCC
CTTGGATCACATCCTGGTTCTCCATTTACCAACCTTGGCAGGTTTGTGCTTATGTTCTTC
ATCGACTAGGAGATGATAATTCATCTTAAGTAAAAGGAGACAGTGTGCTAAGTACCTACG
ACAGCACTGAGTCTATCGTAGGGACTCAGTCAATAGTAGCTCTTCTTAGTATTATACGTA
AGGCACAGCGCTGAGTACCATGAGGTACAGAAGTAAGCAGATTAGAGTGGCGAATCTTGT
CCCTCCATCCGAAGGCAGAAAAGTCTGAATCCACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-365, + strand, RNAz p=0.963369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-365, + strand, RNAz p=0.963369

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-694, gnl|bosTau2|chr19 (32404072-32403405)
               

               
               20-694, gnl|Hg17|chr17 (35181251-35180370)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-694, gnl|bosTau2|chr19 (32404072-32403405)
               

               
               20-694, gnl|Hg17|chr17 (35181251-35180370)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	20-694, gnl\|bosTau2\|chr19 (32404072-32403405)
	20-694, gnl\|Hg17\|chr17 (35181251-35180370)