Non-Coding RNA Search

Ss1.1-Thy1-THY010120E09.5

Sequence:


               
               AGCAGATGGAGGCTGAGGAGCCTAAAGCCCGAGTTCTCCGCTCAAAGTCCTTGTGTCACG
ACGAGATTGAGAACATCCTGGACAGTGACCACCGAGAGCTGATTGGGGATTACTCCAAGG
CTTTCCTCCTACAGACCGTGGATGGCAAGCATCAAGACCTCAAGTACATCTCACCGGAAA
CGATGGTGGCCCTGCTGACCGGCAAGTTCAGCAACATCGTGGAGAGGTTTGTGATTGTGG
ACTGCAGATACCCCTACGAGTATGAAGGCGGGCACATCAAGACTGCTGTGAACTTGCCTC
TGGAACGGGACGCTGAGAACTTCCAGCTACAGAACCCCATCACCCCCCGAAGCCTGGACA
AGAGGATCATCCTCATTTTCCACTGTGAATTCTCATCCGAGCGGGGGCCCCGCATGTGCC
GTTTCATCAGGGAACGAGACAGAGCCTCCAATGACTACCCCAGCCTCTACTATCCCGAGA
TGTATATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCGCAGCACCCGACCTTCTGTGAGC
CTCAGGACTACCGACCCATGAACCACGAGGCCTTCAAGGAGGAGCTGAAGACCTTCCGCC
TCAAGACCCGCAGCTGGGCTGGCGAGCGGAGCCGGCGGGAGCTGTGCAGTCGCCTGCAGG
ACCAGTGAAGGGCCATCAACCCTTCCACCCGCCTCCCTTGCCTCGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGATGGAGGCTGAGGAGCCTAAAGCCCGAGTTCTCCGCTCAAAGTCCTTGTGTCACG
ACGAGATTGAGAACATCCTGGACAGTGACCACCGAGAGCTGATTGGGGATTACTCCAAGG
CTTTCCTCCTACAGACCGTGGATGGCAAGCATCAAGACCTCAAGTACATCTCACCGGAAA
CGATGGTGGCCCTGCTGACCGGCAAGTTCAGCAACATCGTGGAGAGGTTTGTGATTGTGG
ACTGCAGATACCCCTACGAGTATGAAGGCGGGCACATCAAGACTGCTGTGAACTTGCCTC
TGGAACGGGACGCTGAGAACTTCCAGCTACAGAACCCCATCACCCCCCGAAGCCTGGACA
AGAGGATCATCCTCATTTTCCACTGTGAATTCTCATCCGAGCGGGGGCCCCGCATGTGCC
GTTTCATCAGGGAACGAGACAGAGCCTCCAATGACTACCCCAGCCTCTACTATCCCGAGA
TGTATATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCGCAGCACCCGACCTTCTGTGAGC
CTCAGGACTACCGACCCATGAACCACGAGGCCTTCAAGGAGGAGCTGAAGACCTTCCGCC
TCAAGACCCGCAGCTGGGCTGGCGAGCGGAGCCGGCGGGAGCTGTGCAGTCGCCTGCAGG
ACCAGTGAAGGGCCATCAACCCTTCCACCCGCCTCCCTTGCCTCGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10120709|pdb|1CWR|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10120709|pdb|1CWR|A

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               280-418, gnl|bosTau2|chr13 (33793907-33794045)
               

               
               280-418, gnl|Hg17|chr20 (3732049-3732187)
               

               
               280-418, gnl|Mm7|chr2 (130935477-130935615)
               


               
               527-699, gnl|bosTau2|chr13 (33795008-33795180)
               

               
               527-699, gnl|Hg17|chr20 (3733467-3733638)
               

               
               527-699, gnl|Mm7|chr2 (130938081-130938244)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-418, gnl|bosTau2|chr13 (33793907-33794045)
               

               
               280-418, gnl|Hg17|chr20 (3732049-3732187)
               

               
               280-418, gnl|Mm7|chr2 (130935477-130935615)
               


               
               527-699, gnl|bosTau2|chr13 (33795008-33795180)
               

               
               527-699, gnl|Hg17|chr20 (3733467-3733638)
               

               
               527-699, gnl|Mm7|chr2 (130938081-130938244)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	280-418, gnl\|bosTau2\|chr13 (33793907-33794045)
	280-418, gnl\|Hg17\|chr20 (3732049-3732187)
	280-418, gnl\|Mm7\|chr2 (130935477-130935615)

	527-699, gnl\|bosTau2\|chr13 (33795008-33795180)
	527-699, gnl\|Hg17\|chr20 (3733467-3733638)
	527-699, gnl\|Mm7\|chr2 (130938081-130938244)