Ss1.1-Thy1-THY010201B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGGAGGAGGAGGAGGAGAATGAGGAGGAGGATGAAGCTGGAGGGGAAGATGCAGCTG ATGCCAACAATGGGGCACAGGATGACATGAACTGGAATGCTTTAGAATGGGATCGAGCTG CAGAAGAGCTTACATGGGAAAGAATGCTAGGACTTGATGGATCACTAGTTTTTCTAGAAC ATGTCTTCTGGGTGGTGTCTTTGAACACACTGTTCATTCTTGTTTTTGCATTTTGCCCTT ACCACATTGGTCATTTCTCCCTTGTTGGTTTGGGATTTGAAGAACATGTCCAGGCATCTC ATTTTGAAGGCCTCATCACCACCATAGTTGGGTATATACTTTTAGCAATAACGCTGATAA TTTGTCATGGCTTGGCAACTCTTGTTAAATTTCACAGGTCTCGTCGCTTGCTGGGAGTCT GCTATATTGTTGTTAAGGTCTCTTTGTTAGTGGTGGTAGAAATTGGAGTATTCCCTCTCA TTTGTGGCTGGTGGCTGGATATCTGTTCCCTGGAAATGTTTGATGCTACTCTGAAAGATC GAGAATTGAGCTTTCAGTCCGCTCCAGGTACTGCCATGTTTCTGCACTGGCTGGTGGGAA TGGTGTATGTGTTCTACTTCGCCTCCTTCATCCTGTTACTGAGAGAGGTACTTCGACCTG GTGTCTTGTGGTTTCTTGGGAATTTGAACGATCCAGATTTTAATCCAGTACAAGAAATGA TTCACTTGCCTATTTATAGGCATCTCCGAAGATTTATTTTGTCAGTGATTGTCTTTGGCT CCATTGTCCTCCTGATGCTTTGGCTACCTATACGGATAATTAAGAGTCTGCTGCCTAATT TTCTTCCATATAATGTCATGCTCTATAGTGATGCTCCAGTGAGCGAACTGTCCCTTGAGC TGCTTCTGCTTCAGGTTGTCTTACCAGCGTTACTTGAGCAGGGACATACACGGCAGTGGC TGAAGGGGCTTGTGCGAGCATGGACTGTTACTGCTGGATACTTGCTGGATCTTCATTCCT ATTTGTTGGGAGACCAGGAAGAAAATGAGAACAGTGCAAACCAACAAGTTAACAATAACC AGCATGCCCGAAATAACAACGCTATTCCTGTGGTGGGGAAAGGCCTGCATGCAGCCCACC AAGCCATACTCCAGCAGGGAGGGCCTGTCGGCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGGAGGAGGAGGAGGAGAATGAGGAGGAGGATGAAGCTGGAGGGGAAGATGCAGCTG ATGCCAACAATGGGGCACAGGATGACATGAACTGGAATGCTTTAGAATGGGATCGAGCTG CAGAAGAGCTTACATGGGAAAGAATGCTAGGACTTGATGGATCACTAGTTTTTCTAGAAC ATGTCTTCTGGGTGGTGTCTTTGAACACACTGTTCATTCTTGTTTTTGCATTTTGCCCTT ACCACATTGGTCATTTCTCCCTTGTTGGTTTGGGATTTGAAGAACATGTCCAGGCATCTC ATTTTGAAGGCCTCATCACCACCATAGTTGGGTATATACTTTTAGCAATAACGCTGATAA TTTGTCATGGCTTGGCAACTCTTGTTAAATTTCACAGGTCTCGTCGCTTGCTGGGAGTCT GCTATATTGTTGTTAAGGTCTCTTTGTTAGTGGTGGTAGAAATTGGAGTATTCCCTCTCA TTTGTGGCTGGTGGCTGGATATCTGTTCCCTGGAAATGTTTGATGCTACTCTGAAAGATC GAGAATTGAGCTTTCAGTCCGCTCCAGGTACTGCCATGTTTCTGCACTGGCTGGTGGGAA TGGTGTATGTGTTCTACTTCGCCTCCTTCATCCTGTTACTGAGAGAGGTACTTCGACCTG GTGTCTTGTGGTTTCTTGGGAATTTGAACGATCCAGATTTTAATCCAGTACAAGAAATGA TTCACTTGCCTATTTATAGGCATCTCCGAAGATTTATTTTGTCAGTGATTGTCTTTGGCT CCATTGTCCTCCTGATGCTTTGGCTACCTATACGGATAATTAAGAGTCTGCTGCCTAATT TTCTTCCATATAATGTCATGCTCTATAGTGATGCTCCAGTGAGCGAACTGTCCCTTGAGC TGCTTCTGCTTCAGGTTGTCTTACCAGCGTTACTTGAGCAGGGACATACACGGCAGTGGC TGAAGGGGCTTGTGCGAGCATGGACTGTTACTGCTGGATACTTGCTGGATCTTCATTCCT ATTTGTTGGGAGACCAGGAAGAAAATGAGAACAGTGCAAACCAACAAGTTAACAATAACC AGCATGCCCGAAATAACAACGCTATTCCTGTGGTGGGGAAAGGCCTGCATGCAGCCCACC AAGCCATACTCCAGCAGGGAGGGCCTGTCGGCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1059-1176, - strand, RNAz p=0.580695 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1059-1176, - strand, RNAz p=0.580695 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 512-650, gnl|bosTau2|chr20 (37716553-37716415) | |
| 512-650, gnl|canFam2|chr34 (6918675-6918518) | |
| 512-650, gnl|danRer3|chr2 (23168509-23168358) | |
| 512-650, gnl|echTel1|scaffold_247268 (19082-19239) | |
| 512-650, gnl|fr1|chrUn (205896811-205896659) | |
| 512-650, gnl|galGal2|chr2 (78178938-78178780) | |
| 512-650, gnl|hg17|chr5 (10456504-10456662) | |
| 512-650, gnl|Hg17|chr5 (10456518-10456656) | |
| 512-650, gnl|mm7|chr15 (31597212-31597054) | |
| 512-650, gnl|Mm7|chr15 (31597196-31597058) | |
| 512-650, gnl|monDom2|scaffold_4 (30269436-30269594) | |
| 512-650, gnl|oryCun1|scaffold_168928 (798-639) | |
| 512-650, gnl|panTro1|chr4 (10858899-10859057) | |
| 512-650, gnl|rheMac2|chr6 (10334283-10334441) | |
| 512-650, gnl|rn3|chr2 (83522152-83521994) | |
| 512-650, gnl|tetNig1|chr6 (1472158-1471995) | |
| 512-650, gnl|xenTro1|scaffold_989 (82587-82429) | |
| 767-868, gnl|bosTau2|chr20 (37713514-37713413) | |
| 767-868, gnl|canFam2|chr34 (6914789-6914682) | |
| 767-868, gnl|danRer3|chr2 (23166329-23166226) | |
| 767-868, gnl|echTel1|scaffold_247268 (21006-21111) | |
| 767-868, gnl|fr1|chrUn (205896450-205896347) | |
| 767-868, gnl|galGal2|chr2 (78177368-78177261) | |
| 767-868, gnl|hg17|chr5 (10460212-10460319) | |
| 767-868, gnl|Hg17|chr5 (10460213-10460314) | |
| 767-868, gnl|mm7|chr15 (31594717-31594610) | |
| 767-868, gnl|Mm7|chr15 (31594714-31594613) | |
| 767-868, gnl|monDom2|scaffold_4 (30273260-30273367) | |
| 767-868, gnl|oryCun1|scaffold_176717 (37791-37898) | |
| 767-868, gnl|panTro1|chr4 (10862598-10862705) | |
| 767-868, gnl|rheMac2|chr6 (10338018-10338125) | |
| 767-868, gnl|rn3|chr2 (83520568-83520464) | |
| 767-868, gnl|tetNig1|chr6 (1471798-1471695) | |
| 767-868, gnl|xenTro1|scaffold_989 (81300-81194) | |
| 1007-1176, gnl|bosTau2|chr20 (37709885-37709716) | |
| 1007-1176, gnl|Hg17|chr5 (10464445-10464614) | |
| 1007-1176, gnl|Mm7|chr15 (31590611-31590445) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 512-650, gnl|bosTau2|chr20 (37716553-37716415) | |
| 512-650, gnl|canFam2|chr34 (6918675-6918518) | |
| 512-650, gnl|danRer3|chr2 (23168509-23168358) | |
| 512-650, gnl|echTel1|scaffold_247268 (19082-19239) | |
| 512-650, gnl|fr1|chrUn (205896811-205896659) | |
| 512-650, gnl|galGal2|chr2 (78178938-78178780) | |
| 512-650, gnl|hg17|chr5 (10456504-10456662) | |
| 512-650, gnl|Hg17|chr5 (10456518-10456656) | |
| 512-650, gnl|mm7|chr15 (31597212-31597054) | |
| 512-650, gnl|Mm7|chr15 (31597196-31597058) | |
| 512-650, gnl|monDom2|scaffold_4 (30269436-30269594) | |
| 512-650, gnl|oryCun1|scaffold_168928 (798-639) | |
| 512-650, gnl|panTro1|chr4 (10858899-10859057) | |
| 512-650, gnl|rheMac2|chr6 (10334283-10334441) | |
| 512-650, gnl|rn3|chr2 (83522152-83521994) | |
| 512-650, gnl|tetNig1|chr6 (1472158-1471995) | |
| 512-650, gnl|xenTro1|scaffold_989 (82587-82429) | |
| 767-868, gnl|bosTau2|chr20 (37713514-37713413) | |
| 767-868, gnl|canFam2|chr34 (6914789-6914682) | |
| 767-868, gnl|danRer3|chr2 (23166329-23166226) | |
| 767-868, gnl|echTel1|scaffold_247268 (21006-21111) | |
| 767-868, gnl|fr1|chrUn (205896450-205896347) | |
| 767-868, gnl|galGal2|chr2 (78177368-78177261) | |
| 767-868, gnl|hg17|chr5 (10460212-10460319) | |
| 767-868, gnl|Hg17|chr5 (10460213-10460314) | |
| 767-868, gnl|mm7|chr15 (31594717-31594610) | |
| 767-868, gnl|Mm7|chr15 (31594714-31594613) | |
| 767-868, gnl|monDom2|scaffold_4 (30273260-30273367) | |
| 767-868, gnl|oryCun1|scaffold_176717 (37791-37898) | |
| 767-868, gnl|panTro1|chr4 (10862598-10862705) | |
| 767-868, gnl|rheMac2|chr6 (10338018-10338125) | |
| 767-868, gnl|rn3|chr2 (83520568-83520464) | |
| 767-868, gnl|tetNig1|chr6 (1471798-1471695) | |
| 767-868, gnl|xenTro1|scaffold_989 (81300-81194) | |
| 1007-1176, gnl|bosTau2|chr20 (37709885-37709716) | |
| 1007-1176, gnl|Hg17|chr5 (10464445-10464614) | |
| 1007-1176, gnl|Mm7|chr15 (31590611-31590445) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |