Non-Coding RNA Search

Ss1.1-Thy1-THY010201C04.5

Sequence:


               
               TCGACAGGAGTAAAAGCCAAGTCTCCCCGGAGGCTTTCCCACTCAGTCAGAAAAGGAGGG
CTAACGTAGGCAGATGACTCCCAGGGTCCTCAGATGGCCTTCCATTCACAGTGCCTCTTT
TCCAGCCATCATCCCCGGGTCGCTCTTGTTGGGCTGGCTGCTATCCCAGCGCGGGCCAGC
CCTGGCTTATTAAACGTGAACCTGACTTTTCCCCTCATGCTTTCCTGTACCTGGAAGCCC
ATCAGTACCTCATGGGCTGAGAGCAACACTTCCTGAAACTAGGGTAGGCTGAAAGACTAA
CCCATTTGCCCAGCGGTCCAGCTGCCCTTCCCCGAGCATCCCATGTTATCCTTTAATGCA
CACTTTTTTAAAAAAAAAAAGACTATTCTGTGTTGTCTGTAAGACCAAGAAAACTATAGC
GCCCTTCCTCCTTCCGTGTTGGTTTACATTTGAACTCCGTGGGGCAGAAGCTCTGGTGGC
CCATGTCGGCGCCAGATCCATTAGCAGCAACTCTCTGGACAGTCCTCCCCTTCAGTGGCT
GAATAGCTCATCTCTTCCCGGTGCATGATAGCTTTTGCCCCCAGACTTCTGCCTTGTGTG
TAAGTTTTCTATCTCCCCAGCGCTTTTAGCCAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGACAGGAGTAAAAGCCAAGTCTCCCCGGAGGCTTTCCCACTCAGTCAGAAAAGGAGGG
CTAACGTAGGCAGATGACTCCCAGGGTCCTCAGATGGCCTTCCATTCACAGTGCCTCTTT
TCCAGCCATCATCCCCGGGTCGCTCTTGTTGGGCTGGCTGCTATCCCAGCGCGGGCCAGC
CCTGGCTTATTAAACGTGAACCTGACTTTTCCCCTCATGCTTTCCTGTACCTGGAAGCCC
ATCAGTACCTCATGGGCTGAGAGCAACACTTCCTGAAACTAGGGTAGGCTGAAAGACTAA
CCCATTTGCCCAGCGGTCCAGCTGCCCTTCCCCGAGCATCCCATGTTATCCTTTAATGCA
CACTTTTTTAAAAAAAAAAAGACTATTCTGTGTTGTCTGTAAGACCAAGAAAACTATAGC
GCCCTTCCTCCTTCCGTGTTGGTTTACATTTGAACTCCGTGGGGCAGAAGCTCTGGTGGC
CCATGTCGGCGCCAGATCCATTAGCAGCAACTCTCTGGACAGTCCTCCCCTTCAGTGGCT
GAATAGCTCATCTCTTCCCGGTGCATGATAGCTTTTGCCCCCAGACTTCTGCCTTGTGTG
TAAGTTTTCTATCTCCCCAGCGCTTTTAGCCAACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               99-217, + strand, RNAz p=0.955328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-217, + strand, RNAz p=0.955328

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004840, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004840, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               19-636, gnl|bosTau2|chrX (4374339-4373728)
               

               
               19-636, gnl|Hg17|chrX (135475443-135474834)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-636, gnl|bosTau2|chrX (4374339-4373728)
               

               
               19-636, gnl|Hg17|chrX (135475443-135474834)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	19-636, gnl\|bosTau2\|chrX (4374339-4373728)
	19-636, gnl\|Hg17\|chrX (135475443-135474834)