Ss1.1-Thy1-THY010201D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGCCGGAAAAATGGCGCCTCCCAGTCCCCGAGAGCCCAAGGCCCCGTCGGCGAAGAG CGCGTCCAAGTCTGATGGGGAGATGGTACTACCGGGCTTCTCGGACGCAGATAGCTTCGT GAAGTTCGCTCTTGGGTCAGTGGTGGCAGTCACCAAGGCCTCTGGGGGCCTTCCACAGTT TGGCGACGAGTATGATTTTTACCGAAGTTTTCCTGGCTTCCAAGCATTTTGTGAAACACA AGGAGACAGGTTGCTTCAGTGCATGAGCAGGGTGATGCAGTACCACGGGTGTCGAAGCAA CATTAAGGACCGGAGTAAAGTGACTGAGCTGGAGGACAAGTTTGACTTGCTAGTTGACAC CAATGACGTTATTCTGGAAAGAGTGGGCATTTTATTGGATGAAGCATCAGGTGTGAATAA GAATCAACAGCCCGTCCTCCCTGCAGGATTGCAGGTCCCCAAAACCATCGTGTCCAGCTG GAACCGTAAGGCAGGAGAATATAGCAAAAAAACAAAATCTGAAACTTTCCGGCTGCTTCA TGCAAAAAACATCATCCGACCTCAGCTTAAATTCCGAGAGAAGATCGACAATTCCAACAC GCCATTTCTTCCTAAAATCTTCATCAAGCCCAATGCTCAGAAACCTCTCCCTCAGGCTCT CTCTAAGGACAGGCGGGAGCGCCCACAGGACCGGCCCGAGGACTTGGATGTGCCCCCTGC CCTGGCGGATTTCATCCATCAGCAGAGGACCCGGCAGGTGGAGCAGGACATGTTTGCACA TCCTTATCAGTACGAACTGGATCACTTCACTCCACCAGAGTCAGTTCTTCAGAAGCCAGA ACCTCAGTTATACAGACCTGTAGAAGAGACCCCCTGCCATTTTGTGTCCTCGCTGGATGA GCTAGTGGAACTCAACGAAAAGCTCCTGAAGTGCCAGGAATTTGCCGTAGACTTGGAGCA CCACTCTTATAGGAGCTTCCTGGGGCTCACCTGCCTGATGCAGATTTCCACCCGCACAGA AGACTTCATCATTGACACCCTGGAGCTTCGCAGTGACATGTACATTCTCAACGAGAGCCT CACAGACCCAGCTATTGTCAAGGTCTTCCACGGGGCTGATTCCGACATCGAATGGCTGCA GAAGGACTTCGGGTTGTACGTGGTGAACATGTTTGACACCCACCAGGCAGCACGCCTTCT CAACTTGGGTCGGCACTCCCTCGACCACCTGCTGAAGCTCTACTGCAGTGTGGAATCCAA CAAGCAGTATCAGCTGGCTGACTGGAGAATACGGCCTCTGCCTGAGGAGATGCTCAGCTA CGCCCGAGATGACACTCACTACCTGCTCTACATCTACGACAAGATGAGGCTGGCACTGTG GGAGCGAGGCAACGAGCAGCCCGCGCAGCTGCAGGTGGTGTGGCAGCGGAGCAGGGACAT CTGCCTCAAGAAATTCATCAAACCTATCTTCACAGACGAGTCTTACCTTGACCTGTATAG GAAGCAAAAGAAGCATCTCAACACCCAGCAGTTGACAGCCTTTCAGCTGCTGTTTGCCTG GAGGGACAAAACAGCCCGGAGGGAAGATGAGAGTTACGGATACGTCCTGCCAAACCATAT GATGCTCAAGATAGCTGAAGAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGCCGGAAAAATGGCGCCTCCCAGTCCCCGAGAGCCCAAGGCCCCGTCGGCGAAGAG CGCGTCCAAGTCTGATGGGGAGATGGTACTACCGGGCTTCTCGGACGCAGATAGCTTCGT GAAGTTCGCTCTTGGGTCAGTGGTGGCAGTCACCAAGGCCTCTGGGGGCCTTCCACAGTT TGGCGACGAGTATGATTTTTACCGAAGTTTTCCTGGCTTCCAAGCATTTTGTGAAACACA AGGAGACAGGTTGCTTCAGTGCATGAGCAGGGTGATGCAGTACCACGGGTGTCGAAGCAA CATTAAGGACCGGAGTAAAGTGACTGAGCTGGAGGACAAGTTTGACTTGCTAGTTGACAC CAATGACGTTATTCTGGAAAGAGTGGGCATTTTATTGGATGAAGCATCAGGTGTGAATAA GAATCAACAGCCCGTCCTCCCTGCAGGATTGCAGGTCCCCAAAACCATCGTGTCCAGCTG GAACCGTAAGGCAGGAGAATATAGCAAAAAAACAAAATCTGAAACTTTCCGGCTGCTTCA TGCAAAAAACATCATCCGACCTCAGCTTAAATTCCGAGAGAAGATCGACAATTCCAACAC GCCATTTCTTCCTAAAATCTTCATCAAGCCCAATGCTCAGAAACCTCTCCCTCAGGCTCT CTCTAAGGACAGGCGGGAGCGCCCACAGGACCGGCCCGAGGACTTGGATGTGCCCCCTGC CCTGGCGGATTTCATCCATCAGCAGAGGACCCGGCAGGTGGAGCAGGACATGTTTGCACA TCCTTATCAGTACGAACTGGATCACTTCACTCCACCAGAGTCAGTTCTTCAGAAGCCAGA ACCTCAGTTATACAGACCTGTAGAAGAGACCCCCTGCCATTTTGTGTCCTCGCTGGATGA GCTAGTGGAACTCAACGAAAAGCTCCTGAAGTGCCAGGAATTTGCCGTAGACTTGGAGCA CCACTCTTATAGGAGCTTCCTGGGGCTCACCTGCCTGATGCAGATTTCCACCCGCACAGA AGACTTCATCATTGACACCCTGGAGCTTCGCAGTGACATGTACATTCTCAACGAGAGCCT CACAGACCCAGCTATTGTCAAGGTCTTCCACGGGGCTGATTCCGACATCGAATGGCTGCA GAAGGACTTCGGGTTGTACGTGGTGAACATGTTTGACACCCACCAGGCAGCACGCCTTCT CAACTTGGGTCGGCACTCCCTCGACCACCTGCTGAAGCTCTACTGCAGTGTGGAATCCAA CAAGCAGTATCAGCTGGCTGACTGGAGAATACGGCCTCTGCCTGAGGAGATGCTCAGCTA CGCCCGAGATGACACTCACTACCTGCTCTACATCTACGACAAGATGAGGCTGGCACTGTG GGAGCGAGGCAACGAGCAGCCCGCGCAGCTGCAGGTGGTGTGGCAGCGGAGCAGGGACAT CTGCCTCAAGAAATTCATCAAACCTATCTTCACAGACGAGTCTTACCTTGACCTGTATAG GAAGCAAAAGAAGCATCTCAACACCCAGCAGTTGACAGCCTTTCAGCTGCTGTTTGCCTG GAGGGACAAAACAGCCCGGAGGGAAGATGAGAGTTACGGATACGTCCTGCCAAACCATAT GATGCTCAAGATAGCTGAAGAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 123-261, gnl|bosTau2|chr16 (22214580-22214718) | |
| 123-261, gnl|canFam2|chr2 (87827909-87827755) | |
| 123-261, gnl|danRer3|chr23 (15131071-15131221) | |
| 123-261, gnl|dasNov1|scaffold_5066 (9330-9485) | |
| 123-261, gnl|echTel1|scaffold_186809 (8005-8159) | |
| 123-261, gnl|fr1|chrUn (104913662-104913515) | |
| 123-261, gnl|galGal2|chr21 (3983908-3984052) | |
| 123-261, gnl|hg17|chr1 (11092340-11092494) | |
| 123-261, gnl|Hg17|chr1 (11092481-11092343) | |
| 123-261, gnl|mm7|chr4 (147549231-147549079) | |
| 123-261, gnl|Mm7|chr4 (147549088-147549226) | |
| 123-261, gnl|monDom2|scaffold_175 (1122482-1122322) | |
| 123-261, gnl|panTro1|chr1_random (4112904-4113058) | |
| 123-261, gnl|rheMac2|chr1 (14207309-14207463) | |
| 123-261, gnl|rn3|chr5 (165653375-165653224) | |
| 123-261, gnl|tetNig1|chr9 (2185902-2185751) | |
| 123-261, gnl|xenTro1|scaffold_522 (876705-876857) | |
| 489-656, gnl|bosTau2|chr16 (22217417-22217584) | |
| 489-656, gnl|canFam2|chr2 (87831674-87831515) | |
| 489-656, gnl|danRer3|chr23 (15125895-15126043) | |
| 489-656, gnl|dasNov1|scaffold_5066 (5673-5842) | |
| 489-656, gnl|echTel1|scaffold_186809 (2896-3056) | |
| 489-656, gnl|fr1|chrUn (104914571-104914388) | |
| 489-656, gnl|galGal2|chr21 (3982384-3982528) | |
| 489-656, gnl|hg17|chr1 (11085307-11085476) | |
| 489-656, gnl|Hg17|chr1 (11085504-11085337) | |
| 489-656, gnl|loxAfr1|scaffold_84683 (9145-9314) | |
| 489-656, gnl|mm7|chr4 (147552448-147552283) | |
| 489-656, gnl|Mm7|chr4 (147552253-147552420) | |
| 489-656, gnl|monDom2|scaffold_175 (1125580-1125433) | |
| 489-656, gnl|oryCun1|scaffold_201999 (9995-10155) | |
| 489-656, gnl|panTro1|chr1 (11293333-11293502) | |
| 489-656, gnl|rheMac2|chr1 (14200312-14200481) | |
| 489-656, gnl|rn3|chr5 (165655985-165655820) | |
| 489-656, gnl|tetNig1|chr9 (2186738-2186595) | |
| 489-656, gnl|xenTro1|scaffold_5489 (7018-6849) | |
| 845-958, gnl|bosTau2|chr16 (22220073-22220186) | |
| 845-958, gnl|canFam2|chr2 (87833406-87833284) | |
| 845-958, gnl|danRer3|chr23 (15121314-15121433) | |
| 845-958, gnl|dasNov1|scaffold_5066 (3994-4120) | |
| 845-958, gnl|echTel1|scaffold_186809 (818-944) | |
| 845-958, gnl|fr1|chrUn (104915059-104914932) | |
| 845-958, gnl|galGal2|chr21 (3980940-3981057) | |
| 845-958, gnl|hg17|chr1 (11082112-11082239) | |
| 845-958, gnl|Hg17|chr1 (11082236-11082123) | |
| 845-958, gnl|loxAfr1|scaffold_84683 (4236-4362) | |
| 845-958, gnl|mm7|chr4 (147553778-147553651) | |
| 845-958, gnl|Mm7|chr4 (147553652-147553765) | |
| 845-958, gnl|monDom2|scaffold_175 (1128333-1128205) | |
| 845-958, gnl|oryCun1|scaffold_201999 (7413-7540) | |
| 845-958, gnl|panTro1|chr1 (11290140-11290267) | |
| 845-958, gnl|rheMac2|chr1 (14196459-14196586) | |
| 845-958, gnl|rn3|chr5 (165657606-165657479) | |
| 845-958, gnl|tetNig1|chr9 (2187251-2187133) | |
| 845-958, gnl|xenTro1|scaffold_522 (867881-867981) | |
| 1093-1294, gnl|bosTau2|chr16 (22221044-22221244) | |
| 1093-1294, gnl|Hg17|chr1 (11077210-11077010) | |
| 1093-1294, gnl|Mm7|chr4 (147554737-147554937) | |
| 1449-1626, gnl|bosTau2|chr16 (22223191-22223369) | |
| 1449-1626, gnl|canFam2|chr2 (87835872-87835685) | |
| 1449-1626, gnl|danRer3|chr23 (15117066-15117280) | |
| 1449-1626, gnl|dasNov1|scaffold_5066 (1536-1723) | |
| 1449-1626, gnl|echTel1|scaffold_322126 (29451-29267) | |
| 1449-1626, gnl|fr1|chrUn (104916498-104916317) | |
| 1449-1626, gnl|galGal2|chr21 (3978374-3978573) | |
| 1449-1626, gnl|hg17|chr1 (11075057-11075244) | |
| 1449-1626, gnl|Hg17|chr1 (11075237-11075059) | |
| 1449-1626, gnl|loxAfr1|scaffold_84683 (1255-1440) | |
| 1449-1626, gnl|mm7|chr4 (147558084-147557902) | |
| 1449-1626, gnl|Mm7|chr4 (147557907-147558085) | |
| 1449-1626, gnl|monDom2|scaffold_175 (1135376-1135180) | |
| 1449-1626, gnl|oryCun1|scaffold_201999 (4460-4645) | |
| 1449-1626, gnl|panTro1|chr1 (11283159-11283346) | |
| 1449-1626, gnl|rheMac2|chr1 (14192503-14192689) | |
| 1449-1626, gnl|rn3|chr5 (165662000-165661815) | |
| 1449-1626, gnl|tetNig1|chr9 (2188536-2188352) | |
| 1449-1626, gnl|xenTro1|scaffold_522 (866869-867057) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-261, gnl|bosTau2|chr16 (22214580-22214718) | |
| 123-261, gnl|canFam2|chr2 (87827909-87827755) | |
| 123-261, gnl|danRer3|chr23 (15131071-15131221) | |
| 123-261, gnl|dasNov1|scaffold_5066 (9330-9485) | |
| 123-261, gnl|echTel1|scaffold_186809 (8005-8159) | |
| 123-261, gnl|fr1|chrUn (104913662-104913515) | |
| 123-261, gnl|galGal2|chr21 (3983908-3984052) | |
| 123-261, gnl|hg17|chr1 (11092340-11092494) | |
| 123-261, gnl|Hg17|chr1 (11092481-11092343) | |
| 123-261, gnl|mm7|chr4 (147549231-147549079) | |
| 123-261, gnl|Mm7|chr4 (147549088-147549226) | |
| 123-261, gnl|monDom2|scaffold_175 (1122482-1122322) | |
| 123-261, gnl|panTro1|chr1_random (4112904-4113058) | |
| 123-261, gnl|rheMac2|chr1 (14207309-14207463) | |
| 123-261, gnl|rn3|chr5 (165653375-165653224) | |
| 123-261, gnl|tetNig1|chr9 (2185902-2185751) | |
| 123-261, gnl|xenTro1|scaffold_522 (876705-876857) | |
| 489-656, gnl|bosTau2|chr16 (22217417-22217584) | |
| 489-656, gnl|canFam2|chr2 (87831674-87831515) | |
| 489-656, gnl|danRer3|chr23 (15125895-15126043) | |
| 489-656, gnl|dasNov1|scaffold_5066 (5673-5842) | |
| 489-656, gnl|echTel1|scaffold_186809 (2896-3056) | |
| 489-656, gnl|fr1|chrUn (104914571-104914388) | |
| 489-656, gnl|galGal2|chr21 (3982384-3982528) | |
| 489-656, gnl|hg17|chr1 (11085307-11085476) | |
| 489-656, gnl|Hg17|chr1 (11085504-11085337) | |
| 489-656, gnl|loxAfr1|scaffold_84683 (9145-9314) | |
| 489-656, gnl|mm7|chr4 (147552448-147552283) | |
| 489-656, gnl|Mm7|chr4 (147552253-147552420) | |
| 489-656, gnl|monDom2|scaffold_175 (1125580-1125433) | |
| 489-656, gnl|oryCun1|scaffold_201999 (9995-10155) | |
| 489-656, gnl|panTro1|chr1 (11293333-11293502) | |
| 489-656, gnl|rheMac2|chr1 (14200312-14200481) | |
| 489-656, gnl|rn3|chr5 (165655985-165655820) | |
| 489-656, gnl|tetNig1|chr9 (2186738-2186595) | |
| 489-656, gnl|xenTro1|scaffold_5489 (7018-6849) | |
| 845-958, gnl|bosTau2|chr16 (22220073-22220186) | |
| 845-958, gnl|canFam2|chr2 (87833406-87833284) | |
| 845-958, gnl|danRer3|chr23 (15121314-15121433) | |
| 845-958, gnl|dasNov1|scaffold_5066 (3994-4120) | |
| 845-958, gnl|echTel1|scaffold_186809 (818-944) | |
| 845-958, gnl|fr1|chrUn (104915059-104914932) | |
| 845-958, gnl|galGal2|chr21 (3980940-3981057) | |
| 845-958, gnl|hg17|chr1 (11082112-11082239) | |
| 845-958, gnl|Hg17|chr1 (11082236-11082123) | |
| 845-958, gnl|loxAfr1|scaffold_84683 (4236-4362) | |
| 845-958, gnl|mm7|chr4 (147553778-147553651) | |
| 845-958, gnl|Mm7|chr4 (147553652-147553765) | |
| 845-958, gnl|monDom2|scaffold_175 (1128333-1128205) | |
| 845-958, gnl|oryCun1|scaffold_201999 (7413-7540) | |
| 845-958, gnl|panTro1|chr1 (11290140-11290267) | |
| 845-958, gnl|rheMac2|chr1 (14196459-14196586) | |
| 845-958, gnl|rn3|chr5 (165657606-165657479) | |
| 845-958, gnl|tetNig1|chr9 (2187251-2187133) | |
| 845-958, gnl|xenTro1|scaffold_522 (867881-867981) | |
| 1093-1294, gnl|bosTau2|chr16 (22221044-22221244) | |
| 1093-1294, gnl|Hg17|chr1 (11077210-11077010) | |
| 1093-1294, gnl|Mm7|chr4 (147554737-147554937) | |
| 1449-1626, gnl|bosTau2|chr16 (22223191-22223369) | |
| 1449-1626, gnl|canFam2|chr2 (87835872-87835685) | |
| 1449-1626, gnl|danRer3|chr23 (15117066-15117280) | |
| 1449-1626, gnl|dasNov1|scaffold_5066 (1536-1723) | |
| 1449-1626, gnl|echTel1|scaffold_322126 (29451-29267) | |
| 1449-1626, gnl|fr1|chrUn (104916498-104916317) | |
| 1449-1626, gnl|galGal2|chr21 (3978374-3978573) | |
| 1449-1626, gnl|hg17|chr1 (11075057-11075244) | |
| 1449-1626, gnl|Hg17|chr1 (11075237-11075059) | |
| 1449-1626, gnl|loxAfr1|scaffold_84683 (1255-1440) | |
| 1449-1626, gnl|mm7|chr4 (147558084-147557902) | |
| 1449-1626, gnl|Mm7|chr4 (147557907-147558085) | |
| 1449-1626, gnl|monDom2|scaffold_175 (1135376-1135180) | |
| 1449-1626, gnl|oryCun1|scaffold_201999 (4460-4645) | |
| 1449-1626, gnl|panTro1|chr1 (11283159-11283346) | |
| 1449-1626, gnl|rheMac2|chr1 (14192503-14192689) | |
| 1449-1626, gnl|rn3|chr5 (165662000-165661815) | |
| 1449-1626, gnl|tetNig1|chr9 (2188536-2188352) | |
| 1449-1626, gnl|xenTro1|scaffold_522 (866869-867057) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fty (0.17584) | |
| nco (0.161734) | |
| lin (0.145603) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| nco (0.161734) | |
| lin (0.145603) | |
| eep (0.122564) |