Non-Coding RNA Search

Ss1.1-Thy1-THY010201H03.5

Sequence:


               
               GCTGTGGCGAAGCTTGTCGGGTCAGGGCTCAGAAACCAACACCATGACTCTGATCCTGGG
TTACTGGGACATCCGTGGGCTGGCCCACGCCATCCGCCTGCTCCTGGAGTACACAGACTC
CAGCTACGAGGAGAAGAAGTACACGATGGGGGACGCTCCCGACTATGACAGAAGCCAGTG
GCTGAGTGAAAAATTCAAGCTGGGGCTGGACTTCCCCAATCTGCCCTACTTAATTGACGG
GGCTCACAAGCTGACCCAGAGCAATGCCATCCTGCGCTACATTGCTCGCAAGCACAACAT
GTGTGGGGAGACAGAGGAGGAGAAGATTCGAGTGGATGTTTTGGAGAACCAGACCAGGGA
CACAGCTGATGACTTGGCCAGTCTTTGCTACAGCTCTGACTTTGAGAAACTGAAGCCTGG
GTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGTTTCTGGGGAAGAGGCC
TTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTTACGATGTCCTTGACCT
GTACCGCATTTTCGATCCCAAGTGCCTGGATGAATTCCCAAACCTGAAAGACTTCCTCAG
CCGCTTTGAGGGCCTGGAGAGGATCTCAGCCTACATGAGGTCCAGCCGCTTCCTGCCACA
CCCCGTGTATACAAAGATGGCCACGTGGGGCAACAAGTAGTGCCCTGGAAGCAGGAGATG
GAGTGAGGACCAGGCCCTGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGGCGAAGCTTGTCGGGTCAGGGCTCAGAAACCAACACCATGACTCTGATCCTGGG
TTACTGGGACATCCGTGGGCTGGCCCACGCCATCCGCCTGCTCCTGGAGTACACAGACTC
CAGCTACGAGGAGAAGAAGTACACGATGGGGGACGCTCCCGACTATGACAGAAGCCAGTG
GCTGAGTGAAAAATTCAAGCTGGGGCTGGACTTCCCCAATCTGCCCTACTTAATTGACGG
GGCTCACAAGCTGACCCAGAGCAATGCCATCCTGCGCTACATTGCTCGCAAGCACAACAT
GTGTGGGGAGACAGAGGAGGAGAAGATTCGAGTGGATGTTTTGGAGAACCAGACCAGGGA
CACAGCTGATGACTTGGCCAGTCTTTGCTACAGCTCTGACTTTGAGAAACTGAAGCCTGG
GTACTTGAAGGAGATCCCTGAAAAGATGAAGCCCTTCTCCGAGTTTCTGGGGAAGAGGCC
TTGGTTTGCAGGGGACAAGCTCACCTATGTGGATTTCCTGGCTTACGATGTCCTTGACCT
GTACCGCATTTTCGATCCCAAGTGCCTGGATGAATTCCCAAACCTGAAAGACTTCCTCAG
CCGCTTTGAGGGCCTGGAGAGGATCTCAGCCTACATGAGGTCCAGCCGCTTCCTGCCACA
CCCCGTGTATACAAAGATGGCCACGTGGGGCAACAAGTAGTGCCCTGGAAGCAGGAGATG
GAGTGAGGACCAGGCCCTGGAGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61679558|pdb|1XWK|C

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61679558|pdb|1XWK|C

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               27-734, gnl|bosTau2|chr29 (27087387-27088068)
               

               
               27-734, gnl|Hg17|chr6 (111475433-111474716)
               

               
               27-734, gnl|Mm7|chr5 (115863175-115862451)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-734, gnl|bosTau2|chr29 (27087387-27088068)
               

               
               27-734, gnl|Hg17|chr6 (111475433-111474716)
               

               
               27-734, gnl|Mm7|chr5 (115863175-115862451)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	27-734, gnl\|bosTau2\|chr29 (27087387-27088068)
	27-734, gnl\|Hg17\|chr6 (111475433-111474716)
	27-734, gnl\|Mm7\|chr5 (115863175-115862451)

	ece (0.229305)
	jej (0.197844)
	nep (0.183925)
	mcp (0.170648)
	hyp (0.142837)
	nmm (0.132802)
	ese (0.126502)