Non-Coding RNA Search

Ss1.1-Thy1-THY010202A09.5

Sequence:


               
               GGCGCTGGTGTCCCTCAAGGCCATAGGGTGGATGAGCAGCCACACGGACTTTGGCAACAT
CAATGGCTGCTATTTGAACTATTATTTTTTTCTTCTGGCTGCTATTCAAGGAGCCACCCT
CCTGCTTTTCCTCATTGTTTCTGTGAAATACGACCGGCAGCGGTCAAGAGCGAACGGCAT
GCCCACCGGCAGGAGGACCTGAGGCTCCTGCACCCATTAGGTCTGTTGGACGAACAAATC
CAGGGGAAGGAGCTGCCGGAGCTCGGAGAGTGGGCGGGATTTCACGTGGCCGCCAGTGGC
TAACTTTCCTAAAACTTGCATGATTCCTGGATGGTTTCTTTTCTACCCAGTGACCTAGGT
AAGTGCCTTCCTGGAGCAGAAGTGCAGATGTGCCATGCATTGCTTCTCACCACTCAAGAA
CCCGGAAATCCTGCAGCCAGTTTCCTCTCCAACAAATGCTTGCCGACGCAGATGCAGAGT
CTCGGGAGATGACGCCCATACTGGTTGGCATCCAGTATTTTAAACAGATATCTCGAGTTC
CCTGGTGGCTCAGTGGGTTAAGGACCCAGCATTGTCACTGCCGTGGCTTAGCTCGCTGTC
ATGGCGCAGGTTTAATCCCTGGCCCAGGAAGTTTTTGGCTATGAGCACAGCCAGAAAGCA
AAAACAACACAAATATTATCTCCTTTTCCATAAAAGACCATCTCAGTTACTTCTTTTACC
TTCATATTGAGGACTGGGAGGGTTTGTTAAGAAGTAAAAGTGTGGTTAGATGCTGCAAAG
CTCCTGTAGAGAAGTCATGCCTATGGTTTCTTTCACAAGCCACAGATCTTGCCAGCGCCA
GATTCCTTGGTACAAGCCGGTACCAGTACGGAATATATTTTATCTGCCGCTTCAAATAAT
ACTTATTTTTTAAACTATTAACATTGCTTTTTTGTTGTTTCCTTAAGAATGTGCTATTTC
ATCCAATATTTAAGACCACAGGTTCCATCTCAGTCTGCAAAGCACCCTAATGTGTGTTCA
AAGCCTTACTGAGTCAGTCCTGTGCATAATTCCGTTTCTGTACTGTTGAGCCTGGAAACC
TGTCACAGGGTCGGAAAGAGAGCCCTTCTGAACAGCATGGGTGTGGTTGGAGGTGGTTGG
AAGTGATAATGTGAACTTGAACTCTGGATGCTCACCGACTTTGGTGGGGGTATTTTATGT
GTATGTGGAGGTTCTCATTTTGTTTAATAAACTATTCTTTATCTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCTGGTGTCCCTCAAGGCCATAGGGTGGATGAGCAGCCACACGGACTTTGGCAACAT
CAATGGCTGCTATTTGAACTATTATTTTTTTCTTCTGGCTGCTATTCAAGGAGCCACCCT
CCTGCTTTTCCTCATTGTTTCTGTGAAATACGACCGGCAGCGGTCAAGAGCGAACGGCAT
GCCCACCGGCAGGAGGACCTGAGGCTCCTGCACCCATTAGGTCTGTTGGACGAACAAATC
CAGGGGAAGGAGCTGCCGGAGCTCGGAGAGTGGGCGGGATTTCACGTGGCCGCCAGTGGC
TAACTTTCCTAAAACTTGCATGATTCCTGGATGGTTTCTTTTCTACCCAGTGACCTAGGT
AAGTGCCTTCCTGGAGCAGAAGTGCAGATGTGCCATGCATTGCTTCTCACCACTCAAGAA
CCCGGAAATCCTGCAGCCAGTTTCCTCTCCAACAAATGCTTGCCGACGCAGATGCAGAGT
CTCGGGAGATGACGCCCATACTGGTTGGCATCCAGTATTTTAAACAGATATCTCGAGTTC
CCTGGTGGCTCAGTGGGTTAAGGACCCAGCATTGTCACTGCCGTGGCTTAGCTCGCTGTC
ATGGCGCAGGTTTAATCCCTGGCCCAGGAAGTTTTTGGCTATGAGCACAGCCAGAAAGCA
AAAACAACACAAATATTATCTCCTTTTCCATAAAAGACCATCTCAGTTACTTCTTTTACC
TTCATATTGAGGACTGGGAGGGTTTGTTAAGAAGTAAAAGTGTGGTTAGATGCTGCAAAG
CTCCTGTAGAGAAGTCATGCCTATGGTTTCTTTCACAAGCCACAGATCTTGCCAGCGCCA
GATTCCTTGGTACAAGCCGGTACCAGTACGGAATATATTTTATCTGCCGCTTCAAATAAT
ACTTATTTTTTAAACTATTAACATTGCTTTTTTGTTGTTTCCTTAAGAATGTGCTATTTC
ATCCAATATTTAAGACCACAGGTTCCATCTCAGTCTGCAAAGCACCCTAATGTGTGTTCA
AAGCCTTACTGAGTCAGTCCTGTGCATAATTCCGTTTCTGTACTGTTGAGCCTGGAAACC
TGTCACAGGGTCGGAAAGAGAGCCCTTCTGAACAGCATGGGTGTGGTTGGAGGTGGTTGG
AAGTGATAATGTGAACTTGAACTCTGGATGCTCACCGACTTTGGTGGGGGTATTTTATGT
GTATGTGGAGGTTCTCATTTTGTTTAATAAACTATTCTTTATCTGTTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               53-534, gnl|bosTau2|chr17 (25055340-25055841)
               

               
               53-534, gnl|Hg17|chr12 (127803782-127803250)
               

               
               53-534, gnl|Mm7|chr5 (126828350-126827872)
               


               
               726-1168, gnl|bosTau2|chr17 (25055907-25056342)
               

               
               726-1168, gnl|Hg17|chr12 (127803191-127802747)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-534, gnl|bosTau2|chr17 (25055340-25055841)
               

               
               53-534, gnl|Hg17|chr12 (127803782-127803250)
               

               
               53-534, gnl|Mm7|chr5 (126828350-126827872)
               


               
               726-1168, gnl|bosTau2|chr17 (25055907-25056342)
               

               
               726-1168, gnl|Hg17|chr12 (127803191-127802747)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               lun (0.451467)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cly (0.120642)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.451467)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               bla (0.248694)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               cly (0.120642)

	53-534, gnl\|bosTau2\|chr17 (25055340-25055841)
	53-534, gnl\|Hg17\|chr12 (127803782-127803250)
	53-534, gnl\|Mm7\|chr5 (126828350-126827872)

	726-1168, gnl\|bosTau2\|chr17 (25055907-25056342)
	726-1168, gnl\|Hg17\|chr12 (127803191-127802747)

	lun (0.451467)
	sme (0.305437)
	csk (0.281492)
	cga (0.279096)
	bla (0.248694)
	tes (0.207814)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	duo (0.172801)
	eye (0.170503)
	mga (0.160205)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	ova (0.129132)
	sug (0.127291)
	cly (0.120642)