Non-Coding RNA Search

Ss1.1-Thy1-THY010202B05.5

Sequence:


               
               AGAGTGGTGCGCGCCGGGGCTCTCGAACGCTTGAACTCCCGCAGCCCTTTTTCAACCGGC
GATTTTTGTCCCGACTCGCGGCCGAGCGCACGACGTGCAGTGACGTGAAGAAGCCCCGCG
CCACCTAGCAGGCCTCAGTCGTTCCGGAGCTCAAGACTCTTAAGATGGCAGAACAACTTT
CTCCGGGAAAGACAACGGACCAGGTGTGCACTTTCCTTTTCAAAAAGCCTGGGCGGAAAG
GGGCTGCAGGCCGCCGAAAGCGCCCGATCTGCGACCAAGAGTCCGGAGACAGCAGCAGCA
GCAGTGACGAAGGCAGCACTGTGGTTCGCCCTGAAAAGAAGCGGGCGACCCACAATCCGA
TGATACAGAAGACCCGTGGTAGCGGTAAACAGAAGGCGGCTTACGGCGACCTGAGTAGCG
AAGAGGAGGAGGAGGAGAACGAGCCCGAGAGCCTTGGCGTGGTCTACAAGTCCACTCGCT
CGGCGAAACCCGTTGGGCCAGAGGATATGGGGGCGACTGCTGTGTACGAGCTAGACACAG
AGAAGGAGCGTGACGCACAAGCCATCTTTGAGCGCAGCCAGAAGATCCAGGAGGAGCTGA
GGGGCAAGGAAGATGACAAGATCTATCGGGGAATCAATAATTATCAGAAATACATGAAGC
CCAAGGATACGTCTATGGGCAATGCTTCCTCCGGGATGGTGAGGAAGGGCCCCATCCGAG
CTCCCGAGCATCTGCGTGCCACCGTGCGCTGGGATTACCAGCCTGACATTTGCAAGGACT
ACAAGGAGACTGGCTTTTGCGGCTTCGGAGACAGCTGCAAATTCCTCCATGACCGTTCAG
ATTACAAGCATGGGTGGCAGATCGAACGTGAGCTTGATGAGGGTCGCTATGGTGTCTATG
AGGATGAAAACTATGAAGTGGGAAGTGATGAGGAGGAAATACCATTCAAGTGTTTCATCT
GTCGCCAGACCTTCCGAAACCCAGTTGTCACCAAATGCAGGCATTATTTCTGCGAGAGCT
GTGCACTGCAGCATTTCCGCACCACCCCGCGCTGCTATGTCTGTGACCAGCAGACCAATG
GCGTCTTCAATCCAGCGAAAGAATTGATCGCCAAACTGGAGAAGCATCGAGCTGCAGAAG
AGGGTGGTGCTTCCGATTTCCCAGAAGACACCGATGAGGGTCCAATTCCCATTACTTAGT
TTTCCCATTATTCTCGAATCGCGAAATAAATGTTGTTTTGAAAATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTGGTGCGCGCCGGGGCTCTCGAACGCTTGAACTCCCGCAGCCCTTTTTCAACCGGC
GATTTTTGTCCCGACTCGCGGCCGAGCGCACGACGTGCAGTGACGTGAAGAAGCCCCGCG
CCACCTAGCAGGCCTCAGTCGTTCCGGAGCTCAAGACTCTTAAGATGGCAGAACAACTTT
CTCCGGGAAAGACAACGGACCAGGTGTGCACTTTCCTTTTCAAAAAGCCTGGGCGGAAAG
GGGCTGCAGGCCGCCGAAAGCGCCCGATCTGCGACCAAGAGTCCGGAGACAGCAGCAGCA
GCAGTGACGAAGGCAGCACTGTGGTTCGCCCTGAAAAGAAGCGGGCGACCCACAATCCGA
TGATACAGAAGACCCGTGGTAGCGGTAAACAGAAGGCGGCTTACGGCGACCTGAGTAGCG
AAGAGGAGGAGGAGGAGAACGAGCCCGAGAGCCTTGGCGTGGTCTACAAGTCCACTCGCT
CGGCGAAACCCGTTGGGCCAGAGGATATGGGGGCGACTGCTGTGTACGAGCTAGACACAG
AGAAGGAGCGTGACGCACAAGCCATCTTTGAGCGCAGCCAGAAGATCCAGGAGGAGCTGA
GGGGCAAGGAAGATGACAAGATCTATCGGGGAATCAATAATTATCAGAAATACATGAAGC
CCAAGGATACGTCTATGGGCAATGCTTCCTCCGGGATGGTGAGGAAGGGCCCCATCCGAG
CTCCCGAGCATCTGCGTGCCACCGTGCGCTGGGATTACCAGCCTGACATTTGCAAGGACT
ACAAGGAGACTGGCTTTTGCGGCTTCGGAGACAGCTGCAAATTCCTCCATGACCGTTCAG
ATTACAAGCATGGGTGGCAGATCGAACGTGAGCTTGATGAGGGTCGCTATGGTGTCTATG
AGGATGAAAACTATGAAGTGGGAAGTGATGAGGAGGAAATACCATTCAAGTGTTTCATCT
GTCGCCAGACCTTCCGAAACCCAGTTGTCACCAAATGCAGGCATTATTTCTGCGAGAGCT
GTGCACTGCAGCATTTCCGCACCACCCCGCGCTGCTATGTCTGTGACCAGCAGACCAATG
GCGTCTTCAATCCAGCGAAAGAATTGATCGCCAAACTGGAGAAGCATCGAGCTGCAGAAG
AGGGTGGTGCTTCCGATTTCCCAGAAGACACCGATGAGGGTCCAATTCCCATTACTTAGT
TTTCCCATTATTCTCGAATCGCGAAATAAATGTTGTTTTGAAAATCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q67ER4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q67ER4_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               850-969, + strand, RNAz p=0.850532

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               850-969, + strand, RNAz p=0.850532

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               290-1244, gnl|bosTau2|chr29 (17214560-17213611)
               

               
               290-1244, gnl|Hg17|chrX (118787326-118786384)
               

               
               290-1244, gnl|Mm7|chrX (31951281-31952229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               290-1244, gnl|bosTau2|chr29 (17214560-17213611)
               

               
               290-1244, gnl|Hg17|chrX (118787326-118786384)
               

               
               290-1244, gnl|Mm7|chrX (31951281-31952229)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	290-1244, gnl\|bosTau2\|chr29 (17214560-17213611)
	290-1244, gnl\|Hg17\|chrX (118787326-118786384)
	290-1244, gnl\|Mm7\|chrX (31951281-31952229)

	ece (0.229305)
	hea (0.204499)
	fbs (0.175346)
	cut (0.169924)
	fhi (0.169578)
	nmm (0.132802)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)