Ss1.1-Thy1-THY010202F04.5
|
CCGCAGGCGGCGGTTGCGCGGGGACGGTAGGACGGTAGGATGGCGGACGTGAGACTCGTG
GTGTTGGGGCTCGTGCTACTGAGCACCCAGGGCGGCTCTGGGGCAGGGAGCAGGATCTGG
ACCTCGATAGATGATGTTGGCTCCAAAACACGCCTCACCTGTGCCCTGAATCACAGCGCC
ACTGAGATCGCGGGCCACCGCTGGGAGAAGGGGGGCAAGGTGCTAAAGGAGGATGCGCTG
CCTGACCTGAGGACAGAGTTTGAGGTGGACTCAGACGACCGCTCAGGCCAGTACTCCTGC
ATCTTCCTGCCAGAGCACGCGGGCCGCACAGACCTGGAAGTGAAGGGGCCACCTAATGTC
AAGGCTGTGAAGAAGTCAGAGCACGCTACCGAGGGGGAGACCGTGGTGCTGGCCTGCAAG
TCGGACTCCTTCCCGCCAGTCACCGAGTGGCTATGGTACAAGATGAGTGACTCTGGGGAC
CAGGTCATCGCCAACAGCTCCCAGAACAAGTTCTTCGTGGTCTCCTCGGAGACCAAGACA
GAGCTGCACATCCCAGACCTGGACCTGAAGGAGGACCCGGGCAAGTACGCGTGCAATGGC
ACCAGCTCTGAGGGCACCGGCCAGGCGGTCATCGTGCTGCGTGTGCGCAACCGCTTTGCC
GCCCTCTGGCCCTTCCTGGGCATCGTGGCTGAGGTGCTTGTGCTGGTCACCGTCATCTTC
ATCTATGAGAAGCGGCGGAAGCCGGATGAGGTCCTGGATGATGAGGACACCGGCTCTGCT
CCACTGAAGAGCAGTGGACACCACGTGAATGACAAAGGCAAGAACGTTCGCCAGAGAAAT
GCCAGCTGAGAGGTGCTGAGCATGAGTCTGCATGGGCACGCCAGCCTGTCTGGAGGAGCC
TGGTGTTCCCCTGGTGTTTGCACAACCCCACGTTCCTTCCTCTTAAGGAAACCCGCCCAG
CAAAAGCAAACCACCTTGTGTGTTCAAATCACACATCTTCTCTTCTTTTTCACAAAACGA
AGCTAGGGTTTTCTATGTGTAGAATCCTGTCCCTCGGGGGTTTTGCTTCCCTTTTTAAAC
ATTTCACAAGCACCTCAGGGCAGTTGTGAGGCTCCTGTGATGTTCCTGCTGTGCCCTGGC
CCAGCCCCCACTGCCTCTGTCTTGTGCCCTCACTGTCCACCTGCCTGGAGCCCCACCCTG
ATGCCCCCCCCCCCCCCGCCCCATGTCCCCTGGGCTGTTGGCCTCCTAGTCTGCCACACT
GGGTGGGGTGTGGAGGACAGAACTTTTTCTGAGGTTCCCGCCCCAGGACCATCTCCCTGA
GGCTGCTGGGCCCTGTTGGGCCAGAGCCAGTTCCCTGCCTTCTGCAGAAGGTCACAGGTC
GTGTGCAGTGCCAATCCTCCTGCTGTGTGAAGCTGGTGCTGTTGAGTCACTGCAGGTCTG
TGTGGTGACTCGGGACAGCTCTGGCCACGTGGCCCCCCTCAGGGCTCCCCACTTCCCATA
CGCCCAGGAAGATGGCGGTCCGGCTCTCCACTTGGAGCAGGAGCTGCTGTGACCTCCCCA
GCTGGGCCTGAGCCCCTGCCCTACCTTCCTGCTCACCAATAAAGGCTGACCCTACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGCAGGCGGCGGTTGCGCGGGGACGGTAGGACGGTAGGATGGCGGACGTGAGACTCGTG
GTGTTGGGGCTCGTGCTACTGAGCACCCAGGGCGGCTCTGGGGCAGGGAGCAGGATCTGG
ACCTCGATAGATGATGTTGGCTCCAAAACACGCCTCACCTGTGCCCTGAATCACAGCGCC
ACTGAGATCGCGGGCCACCGCTGGGAGAAGGGGGGCAAGGTGCTAAAGGAGGATGCGCTG
CCTGACCTGAGGACAGAGTTTGAGGTGGACTCAGACGACCGCTCAGGCCAGTACTCCTGC
ATCTTCCTGCCAGAGCACGCGGGCCGCACAGACCTGGAAGTGAAGGGGCCACCTAATGTC
AAGGCTGTGAAGAAGTCAGAGCACGCTACCGAGGGGGAGACCGTGGTGCTGGCCTGCAAG
TCGGACTCCTTCCCGCCAGTCACCGAGTGGCTATGGTACAAGATGAGTGACTCTGGGGAC
CAGGTCATCGCCAACAGCTCCCAGAACAAGTTCTTCGTGGTCTCCTCGGAGACCAAGACA
GAGCTGCACATCCCAGACCTGGACCTGAAGGAGGACCCGGGCAAGTACGCGTGCAATGGC
ACCAGCTCTGAGGGCACCGGCCAGGCGGTCATCGTGCTGCGTGTGCGCAACCGCTTTGCC
GCCCTCTGGCCCTTCCTGGGCATCGTGGCTGAGGTGCTTGTGCTGGTCACCGTCATCTTC
ATCTATGAGAAGCGGCGGAAGCCGGATGAGGTCCTGGATGATGAGGACACCGGCTCTGCT
CCACTGAAGAGCAGTGGACACCACGTGAATGACAAAGGCAAGAACGTTCGCCAGAGAAAT
GCCAGCTGAGAGGTGCTGAGCATGAGTCTGCATGGGCACGCCAGCCTGTCTGGAGGAGCC
TGGTGTTCCCCTGGTGTTTGCACAACCCCACGTTCCTTCCTCTTAAGGAAACCCGCCCAG
CAAAAGCAAACCACCTTGTGTGTTCAAATCACACATCTTCTCTTCTTTTTCACAAAACGA
AGCTAGGGTTTTCTATGTGTAGAATCCTGTCCCTCGGGGGTTTTGCTTCCCTTTTTAAAC
ATTTCACAAGCACCTCAGGGCAGTTGTGAGGCTCCTGTGATGTTCCTGCTGTGCCCTGGC
CCAGCCCCCACTGCCTCTGTCTTGTGCCCTCACTGTCCACCTGCCTGGAGCCCCACCCTG
ATGCCCCCCCCCCCCCCGCCCCATGTCCCCTGGGCTGTTGGCCTCCTAGTCTGCCACACT
GGGTGGGGTGTGGAGGACAGAACTTTTTCTGAGGTTCCCGCCCCAGGACCATCTCCCTGA
GGCTGCTGGGCCCTGTTGGGCCAGAGCCAGTTCCCTGCCTTCTGCAGAAGGTCACAGGTC
GTGTGCAGTGCCAATCCTCCTGCTGTGTGAAGCTGGTGCTGTTGAGTCACTGCAGGTCTG
TGTGGTGACTCGGGACAGCTCTGGCCACGTGGCCCCCCTCAGGGCTCCCCACTTCCCATA
CGCCCAGGAAGATGGCGGTCCGGCTCTCCACTTGGAGCAGGAGCTGCTGTGACCTCCCCA
GCTGGGCCTGAGCCCCTGCCCTACCTTCCTGCTCACCAATAAAGGCTGACCCTACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|57101498|ref|XP_533964.1| |
Protein identifier
|
gi|57101498|ref|XP_533964.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
105-264, gnl|bosTau2|chr7 (10741626-10741785) |
|
105-264, gnl|canFam2|chr20 (61090467-61090351) |
|
105-264, gnl|hg17|chr19 (530495-530612) |
|
105-264, gnl|Hg17|chr19 (530498-530657) |
|
105-264, gnl|loxAfr1|scaffold_71883 (11870-11987) |
|
105-264, gnl|mm7|chr10 (79489674-79489789) |
|
105-264, gnl|monDom2|scaffold_155 (1378805-1378685) |
|
105-264, gnl|oryCun1|scaffold_174878 (112917-112799) |
|
105-264, gnl|panTro1|chr20 (573420-573537) |
|
105-264, gnl|rheMac2|chr19 (309002-309119) |
|
105-264, gnl|rn3|chr7 (11510192-11510077) |
|
105-264, gnl|xenTro1|scaffold_4214 (7626-7525) |
| |
|
346-765, gnl|bosTau2|chr7 (10742257-10742676) |
|
346-765, gnl|Hg17|chr19 (531645-532596) |
|
346-765, gnl|Mm7|chrX (87552730-87552369) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
105-264, gnl|bosTau2|chr7 (10741626-10741785) |
|
105-264, gnl|canFam2|chr20 (61090467-61090351) |
|
105-264, gnl|hg17|chr19 (530495-530612) |
|
105-264, gnl|Hg17|chr19 (530498-530657) |
|
105-264, gnl|loxAfr1|scaffold_71883 (11870-11987) |
|
105-264, gnl|mm7|chr10 (79489674-79489789) |
|
105-264, gnl|monDom2|scaffold_155 (1378805-1378685) |
|
105-264, gnl|oryCun1|scaffold_174878 (112917-112799) |
|
105-264, gnl|panTro1|chr20 (573420-573537) |
|
105-264, gnl|rheMac2|chr19 (309002-309119) |
|
105-264, gnl|rn3|chr7 (11510192-11510077) |
|
105-264, gnl|xenTro1|scaffold_4214 (7626-7525) |
| |
|
346-765, gnl|bosTau2|chr7 (10742257-10742676) |
|
346-765, gnl|Hg17|chr19 (531645-532596) |
|
346-765, gnl|Mm7|chrX (87552730-87552369) |
|
col (0.975039) |
|
nco (0.646935) |
|
fbs (0.526039) |
|
cty (0.5204) |
|
fhi (0.508733) |
|
eep (0.490256) |
|
ebs (0.473205) |
|
ece (0.45861) |
|
nca (0.410621) |
|
nmm (0.398406) |
|
cly (0.361925) |
|
ton (0.351) |
|
mcp (0.341297) |
|
jej (0.296765) |
|
cga (0.279096) |
|
pla (0.267344) |
|
ute (0.265569) |
|
ese (0.253004) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fli (0.202881) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cli (0.152812) |
|
cag (0.151194) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cov (0.132153) |
|
clu (0.119646) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
col (0.975039) |
|
nco (0.646935) |
|
fbs (0.526039) |
|
cty (0.5204) |
|
fhi (0.508733) |
|
eep (0.490256) |
|
ebs (0.473205) |
|
ece (0.45861) |
|
nca (0.410621) |
|
nmm (0.398406) |
|
cly (0.361925) |
|
ton (0.351) |
|
mcp (0.341297) |
|
jej (0.296765) |
|
cga (0.279096) |
|
pla (0.267344) |
|
ute (0.265569) |
|
ese (0.253004) |
|
jca (0.22792) |
|
nms (0.213858) |
|
mas (0.210305) |
|
fli (0.202881) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
cki (0.165235) |
|
csp (0.161186) |
|
cli (0.152812) |
|
cag (0.151194) |
|
lun (0.150489) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
cov (0.132153) |
|
clu (0.119646) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
