Ss1.1-Thy1-THY010202F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTATTGCCGCCGCCGTCGCCGCGGTCAGAGGGAGCGCGATGGCTGGGCCAGCGTGGATC TCCAAGGTCTCTCGGCTGCTGGGGGCCTTCCACAACCAAAAACAGGTGACCAGAGGTTTT GCTGGTGGTGTTAAGACAGTAACTTTAATTCCAGGCGATGGAATTGGCCCAGAAATTTCA GCGGCAGTTATGAAGATTTTTGATGCTGCCAAAGCGCCTATTCAGTGGGAGGAACGGAAT GTCACTGCCATTCAAGGACCGGGAGGAAAGTGGATGATCCCTCCGGAGGCCAAGGAGTCC ATGGATAAGAACAAGATGGGCTTGAAAGGCCCCTTAAAAACTCCAATAGCTGCTGGTCAC CCATCTATGAATTTATTGCTGCGTAAAACATTTGACCTTTATGCCAATGTCCGACCGTGT GTCTCAATCGAAGGCTATAAAACCCCTTACACAGATGTAAATATTGTCACCATTCGCGAG AACACGGAAGGAGAATACAGTGGAATCGAGCATGTGATCGTGGATGGAGTCGTGCAGAGT ATCAAGCTCATCACCGAGGGGGCGAGCAAGCGCATCGCCGAGTTCGCCTTTGAATACGCA CGGAACAATCACCGGAGCAACGTCACGGCGGTGCACAAAGCCAACATCATGCGCATGTCA GATGGGCTTTTTCTGCAAAAATGCAGGGAAGTTGCAGAAAACTGTAAAGATATTAAATTT AATGAGATGTACCTTGATACAGTATGTTTGAATATGGTCCAAGATCCGTCTCAGTTTGAT GTTCTTGTTATGCCAAATTTGTATGGAGACATTCTTAGTGACCTGTGTGCGGGATTGATC GGAGGTCTTGGTGTGACACCAAGCGGCAACATTGGAGCCAACGGGGTTGCAATCTTTGAG TCGGTTCACGGGACTGCGCCTGACATCGCCGGCAAGGACATGGCCAACCCCACAGCCCTC CTGCTCAGTGCTGTGATGATGCTGCGCCACATGGGGCTCTTCGACCACGCTGCAAAGATT GAGACCGCGTGCTTTGCTACGATTAAGGATGGGAAGAGCTTAACAAAAGATTTGGGAGGC AACGCAAAATGCTCAGACTTCACAGAAGAAATCTGTCGCCGAGTAAAAGATTTAGATTAA GACGGCTCCAAACAGTATTTGCATCAGTTGCTTCTAACGGACGCCATCTCAGCCTGTATT AGAATACCTCCCATTCTATATGCATTTGTTGCTTGTTTCTTGACAGAGTCCATTTCTAGA CCTGGCCTTTTCCTAACAAAAATCTGTGCAAAGGATGCAGGCGATGTCCCTAGGCCTGCT TTCAAAGGACTTTTTCCAAGTGCTTGTTTTATTTATTACATGTCTATCTGGTATACTTTT TTTGTACACTTCAAGTGGACTGTATCATTTGCCATTGTTAACCATCTTACATTTCAGTTA AAAGTTTTTCTTCCACTGTAAATACCATGATACAGAATTGATAAGAGAAAAATCTAACTT TTTAAAGAAAATCTCTGATTTCCTTGGTTTGTGAAAAATATAACAGAAATAAAGTAGAAT ATTGAGGCAATAGCACAAGATGATCTTCTTATAAAACTAAACAGGCACAAGAGAAATTTC CTGGGAAAGTTTCCATCAAAACAGTAAATACGGTATATTTCTTAGTGACATGGAAAGTAA AGACTGATTTGTCCTTTTACGTGAATTACTGAGTATAAGTAAAGACTTCAGATCCAAGAA ATATATAATGAGAAATGTAATTTTTGTTAATAAGATATGGATAATATATTGGGTACAGAC ACAAATGCATTGTGTGTTCAATTATTTTTGTTACCTTGAGACTTAATGTTCTCAGCGAGA GCTTTTAATGAAGTGAAAGGGTGGTCCTTCCTTCTCATTGGCCACACATCAGGCATCGTG CGAGACACAGCCCCTGTGCAGACACTGAGCCGGGACGTGGGAGCTGACCCTTGTGTTCCT TCACTCCCGCAGCATGTATGTCATTGTCCGGAAGCGGACCACACTCCCACTGATACTGCT AAAAGGTCCGAACACATAATCTGACAGCAATTGAGGAGCCTGGGGTGCTGGCTATTCATT TTATATTTCACTGGCTGCCCCTTCCCCCAAAGCCGCAAATCACTGCCCTCTGCCTCAGCA CCGGCAAGATGAGAGATGAGCTGCAGACTCAGCCTGAGCTGGTTCACAAAATTCGTGCCA CACTGGCGCTTGGTTTCTGATCTTCAGGCACTTCCTCGTCTCTCCTCTGTTCCCACTCCT AGTGTGATTTCTCTTTAATCCTCAGATACTAAGTCACTATTTTCGTGCACCTTTTGGGCC CACCCCAAAGGCAACTCCCATCCTCCTTAGTCCTTGTGTAACACTGTAAACCGGCAGCTT CGCATAGTACACCCTGGTCACGGGGCTTTCCTAACAGCAACAAATAGCCCGTCTGGGTCC TTTTTCAGGCTTGTAACCAGACTCACGGACTTACGTGTATTTTACTTTGTTTAAACTGCT GCTGCTTCTGTTTTATTGGATTGTGCTAATTATCAGTGGTTCTTGGGTTTACACTAATAA AGAATTCCCAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTATTGCCGCCGCCGTCGCCGCGGTCAGAGGGAGCGCGATGGCTGGGCCAGCGTGGATC TCCAAGGTCTCTCGGCTGCTGGGGGCCTTCCACAACCAAAAACAGGTGACCAGAGGTTTT GCTGGTGGTGTTAAGACAGTAACTTTAATTCCAGGCGATGGAATTGGCCCAGAAATTTCA GCGGCAGTTATGAAGATTTTTGATGCTGCCAAAGCGCCTATTCAGTGGGAGGAACGGAAT GTCACTGCCATTCAAGGACCGGGAGGAAAGTGGATGATCCCTCCGGAGGCCAAGGAGTCC ATGGATAAGAACAAGATGGGCTTGAAAGGCCCCTTAAAAACTCCAATAGCTGCTGGTCAC CCATCTATGAATTTATTGCTGCGTAAAACATTTGACCTTTATGCCAATGTCCGACCGTGT GTCTCAATCGAAGGCTATAAAACCCCTTACACAGATGTAAATATTGTCACCATTCGCGAG AACACGGAAGGAGAATACAGTGGAATCGAGCATGTGATCGTGGATGGAGTCGTGCAGAGT ATCAAGCTCATCACCGAGGGGGCGAGCAAGCGCATCGCCGAGTTCGCCTTTGAATACGCA CGGAACAATCACCGGAGCAACGTCACGGCGGTGCACAAAGCCAACATCATGCGCATGTCA GATGGGCTTTTTCTGCAAAAATGCAGGGAAGTTGCAGAAAACTGTAAAGATATTAAATTT AATGAGATGTACCTTGATACAGTATGTTTGAATATGGTCCAAGATCCGTCTCAGTTTGAT GTTCTTGTTATGCCAAATTTGTATGGAGACATTCTTAGTGACCTGTGTGCGGGATTGATC GGAGGTCTTGGTGTGACACCAAGCGGCAACATTGGAGCCAACGGGGTTGCAATCTTTGAG TCGGTTCACGGGACTGCGCCTGACATCGCCGGCAAGGACATGGCCAACCCCACAGCCCTC CTGCTCAGTGCTGTGATGATGCTGCGCCACATGGGGCTCTTCGACCACGCTGCAAAGATT GAGACCGCGTGCTTTGCTACGATTAAGGATGGGAAGAGCTTAACAAAAGATTTGGGAGGC AACGCAAAATGCTCAGACTTCACAGAAGAAATCTGTCGCCGAGTAAAAGATTTAGATTAA GACGGCTCCAAACAGTATTTGCATCAGTTGCTTCTAACGGACGCCATCTCAGCCTGTATT AGAATACCTCCCATTCTATATGCATTTGTTGCTTGTTTCTTGACAGAGTCCATTTCTAGA CCTGGCCTTTTCCTAACAAAAATCTGTGCAAAGGATGCAGGCGATGTCCCTAGGCCTGCT TTCAAAGGACTTTTTCCAAGTGCTTGTTTTATTTATTACATGTCTATCTGGTATACTTTT TTTGTACACTTCAAGTGGACTGTATCATTTGCCATTGTTAACCATCTTACATTTCAGTTA AAAGTTTTTCTTCCACTGTAAATACCATGATACAGAATTGATAAGAGAAAAATCTAACTT TTTAAAGAAAATCTCTGATTTCCTTGGTTTGTGAAAAATATAACAGAAATAAAGTAGAAT ATTGAGGCAATAGCACAAGATGATCTTCTTATAAAACTAAACAGGCACAAGAGAAATTTC CTGGGAAAGTTTCCATCAAAACAGTAAATACGGTATATTTCTTAGTGACATGGAAAGTAA AGACTGATTTGTCCTTTTACGTGAATTACTGAGTATAAGTAAAGACTTCAGATCCAAGAA ATATATAATGAGAAATGTAATTTTTGTTAATAAGATATGGATAATATATTGGGTACAGAC ACAAATGCATTGTGTGTTCAATTATTTTTGTTACCTTGAGACTTAATGTTCTCAGCGAGA GCTTTTAATGAAGTGAAAGGGTGGTCCTTCCTTCTCATTGGCCACACATCAGGCATCGTG CGAGACACAGCCCCTGTGCAGACACTGAGCCGGGACGTGGGAGCTGACCCTTGTGTTCCT TCACTCCCGCAGCATGTATGTCATTGTCCGGAAGCGGACCACACTCCCACTGATACTGCT AAAAGGTCCGAACACATAATCTGACAGCAATTGAGGAGCCTGGGGTGCTGGCTATTCATT TTATATTTCACTGGCTGCCCCTTCCCCCAAAGCCGCAAATCACTGCCCTCTGCCTCAGCA CCGGCAAGATGAGAGATGAGCTGCAGACTCAGCCTGAGCTGGTTCACAAAATTCGTGCCA CACTGGCGCTTGGTTTCTGATCTTCAGGCACTTCCTCGTCTCTCCTCTGTTCCCACTCCT AGTGTGATTTCTCTTTAATCCTCAGATACTAAGTCACTATTTTCGTGCACCTTTTGGGCC CACCCCAAAGGCAACTCCCATCCTCCTTAGTCCTTGTGTAACACTGTAAACCGGCAGCTT CGCATAGTACACCCTGGTCACGGGGCTTTCCTAACAGCAACAAATAGCCCGTCTGGGTCC TTTTTCAGGCTTGTAACCAGACTCACGGACTTACGTGTATTTTACTTTGTTTAAACTGCT GCTGCTTCTGTTTTATTGGATTGTGCTAATTATCAGTGGTTCTTGGGTTTACACTAATAA AGAATTCCCAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1864-1973, - strand, RNAz p=0.847897 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1864-1973, - strand, RNAz p=0.847897 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 327-516, gnl|bosTau2|chr21 (1210266-1210455) | |
| 327-516, gnl|canFam2|chr3 (61176703-61176878) | |
| 327-516, gnl|danRer3|chr25 (20557842-20557684) | |
| 327-516, gnl|dasNov1|scaffold_59350 (1400-1567) | |
| 327-516, gnl|echTel1|scaffold_277861 (7406-7232) | |
| 327-516, gnl|fr1|chrUn (157719634-157719481) | |
| 327-516, gnl|galGal2|chr10 (4573241-4573062) | |
| 327-516, gnl|hg17|chr15 (76240949-76241127) | |
| 327-516, gnl|Hg17|chr15 (76240976-76241165) | |
| 327-516, gnl|loxAfr1|scaffold_48495 (289-467) | |
| 327-516, gnl|mm7|chr9 (54625302-54625477) | |
| 327-516, gnl|Mm7|chr9 (54625326-54625515) | |
| 327-516, gnl|monDom2|scaffold_41 (16591504-16591655) | |
| 327-516, gnl|oryCun1|scaffold_113162 (3841-3666) | |
| 327-516, gnl|panTro1|chr16 (76895707-76895885) | |
| 327-516, gnl|rheMac2|chr7 (57196572-57196750) | |
| 327-516, gnl|rn3|chr8 (58165199-58165374) | |
| 327-516, gnl|tetNig1|chr13 (7299477-7299326) | |
| 327-516, gnl|xenTro1|scaffold_62 (1577170-1577342) | |
| 648-753, gnl|bosTau2|chr21 (1211913-1212018) | |
| 648-753, gnl|canFam2|chr3 (61178208-61178315) | |
| 648-753, gnl|danRer3|chr25 (20546317-20546210) | |
| 648-753, gnl|dasNov1|scaffold_26034 (8710-8605) | |
| 648-753, gnl|echTel1|scaffold_277861 (5678-5571) | |
| 648-753, gnl|fr1|chrUn (157719069-157718962) | |
| 648-753, gnl|galGal2|chr10 (4572019-4571912) | |
| 648-753, gnl|hg17|chr15 (76242900-76243007) | |
| 648-753, gnl|Hg17|chr15 (76242901-76243006) | |
| 648-753, gnl|loxAfr1|scaffold_48495 (2027-2134) | |
| 648-753, gnl|mm7|chr9 (54627715-54627822) | |
| 648-753, gnl|Mm7|chr9 (54627716-54627821) | |
| 648-753, gnl|monDom2|scaffold_41 (16593557-16593664) | |
| 648-753, gnl|panTro1|chr16 (76897659-76897766) | |
| 648-753, gnl|rheMac2|chr7 (57198505-57198612) | |
| 648-753, gnl|rn3|chr8 (58169015-58169122) | |
| 648-753, gnl|tetNig1|chr13 (7298928-7298824) | |
| 648-753, gnl|xenTro1|scaffold_62 (1582817-1582919) | |
| 1055-2591, gnl|bosTau2|chr21 (1216179-1217733) | |
| 1055-2591, gnl|Hg17|chr15 (76248317-76249934) | |
| 1055-2591, gnl|Mm7|chr9 (54632606-54633983) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 327-516, gnl|bosTau2|chr21 (1210266-1210455) | |
| 327-516, gnl|canFam2|chr3 (61176703-61176878) | |
| 327-516, gnl|danRer3|chr25 (20557842-20557684) | |
| 327-516, gnl|dasNov1|scaffold_59350 (1400-1567) | |
| 327-516, gnl|echTel1|scaffold_277861 (7406-7232) | |
| 327-516, gnl|fr1|chrUn (157719634-157719481) | |
| 327-516, gnl|galGal2|chr10 (4573241-4573062) | |
| 327-516, gnl|hg17|chr15 (76240949-76241127) | |
| 327-516, gnl|Hg17|chr15 (76240976-76241165) | |
| 327-516, gnl|loxAfr1|scaffold_48495 (289-467) | |
| 327-516, gnl|mm7|chr9 (54625302-54625477) | |
| 327-516, gnl|Mm7|chr9 (54625326-54625515) | |
| 327-516, gnl|monDom2|scaffold_41 (16591504-16591655) | |
| 327-516, gnl|oryCun1|scaffold_113162 (3841-3666) | |
| 327-516, gnl|panTro1|chr16 (76895707-76895885) | |
| 327-516, gnl|rheMac2|chr7 (57196572-57196750) | |
| 327-516, gnl|rn3|chr8 (58165199-58165374) | |
| 327-516, gnl|tetNig1|chr13 (7299477-7299326) | |
| 327-516, gnl|xenTro1|scaffold_62 (1577170-1577342) | |
| 648-753, gnl|bosTau2|chr21 (1211913-1212018) | |
| 648-753, gnl|canFam2|chr3 (61178208-61178315) | |
| 648-753, gnl|danRer3|chr25 (20546317-20546210) | |
| 648-753, gnl|dasNov1|scaffold_26034 (8710-8605) | |
| 648-753, gnl|echTel1|scaffold_277861 (5678-5571) | |
| 648-753, gnl|fr1|chrUn (157719069-157718962) | |
| 648-753, gnl|galGal2|chr10 (4572019-4571912) | |
| 648-753, gnl|hg17|chr15 (76242900-76243007) | |
| 648-753, gnl|Hg17|chr15 (76242901-76243006) | |
| 648-753, gnl|loxAfr1|scaffold_48495 (2027-2134) | |
| 648-753, gnl|mm7|chr9 (54627715-54627822) | |
| 648-753, gnl|Mm7|chr9 (54627716-54627821) | |
| 648-753, gnl|monDom2|scaffold_41 (16593557-16593664) | |
| 648-753, gnl|panTro1|chr16 (76897659-76897766) | |
| 648-753, gnl|rheMac2|chr7 (57198505-57198612) | |
| 648-753, gnl|rn3|chr8 (58169015-58169122) | |
| 648-753, gnl|tetNig1|chr13 (7298928-7298824) | |
| 648-753, gnl|xenTro1|scaffold_62 (1582817-1582919) | |
| 1055-2591, gnl|bosTau2|chr21 (1216179-1217733) | |
| 1055-2591, gnl|Hg17|chr15 (76248317-76249934) | |
| 1055-2591, gnl|Mm7|chr9 (54632606-54633983) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| amn (1.25313) | |
| pro (1.02407) | |
| tbr (0.925069) | |
| hea (0.613497) | |
| bfe (0.599431) | |
| cbe (0.478469) | |
| isp (0.451128) | |
| nms (0.427716) | |
| csk (0.422238) | |
| mas (0.42061) | |
| ste (0.405625) | |
| col (0.390016) | |
| vin (0.332557) | |
| fco (0.314416) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| sug (0.254582) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| lin (0.145603) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (1.25313) | |
| pro (1.02407) | |
| tbr (0.925069) | |
| hea (0.613497) | |
| bfe (0.599431) | |
| cbe (0.478469) | |
| isp (0.451128) | |
| nms (0.427716) | |
| csk (0.422238) | |
| mas (0.42061) | |
| ste (0.405625) | |
| col (0.390016) | |
| vin (0.332557) | |
| fco (0.314416) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| ova (0.258264) | |
| sug (0.254582) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| lin (0.145603) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |