Non-Coding RNA Search

Ss1.1-Thy1-THY010202H12.5

Sequence:


               
               GTGACTGACCAAGCGGAGCCGGAGACCAGTTTCCTAGGAGAAGACCCACCGTGGGTGGTG
CGCCCGGCGGACGGCGGCGGGATGGAAGCAACCTTGGAGCAGCACTTGGAGGACACAATG
AAGAATCCATCCATTGTTGGAGTCCTGTGCACAGATTCACAAGGACTCAATCTGGGATGC
CGAGGGACCCTGTCTGATGAGCATGCTGGGGTGATATCTGTCCTAGCCCAGCAAGCAGCT
AAGCTAACCTCAGACCCCACCGATATTCCTGTCGTGTGTCTAGAATCAGATAACGGGAAC
ATCATGATCCAGAAGCACGATGGCATCACAGTGGCCGTGCATAAAATGGCCTCTTGACAC
CCTGTGTCCATTCTCCTGCAGCCTGTCACAGGGCCTCATTCATACTTACCTTACAGAACT
ATTCAAGTTCCAGTAGTTAGGCTGTTCGTATAATGTGCATTGGGTGCTTTTCTATTAATT
TTAGAGTAAGCTGCTTTTTGCCATTCCATGGATTGACTTATCAAAATACTGGTTAGGAAA
GTATCATGTTTTGAAGCAGCAGGTTTAGGTCACTTTATATATAGAATCTTGTTATGTTTA
ATAAACCTGGTTAGAGGAAAAAAAAAAAAAAAAAAAGATTCTTTAAATTCTTATCAAATG
TTTATTTTTCAATTACCAAATTGTAATCTTTAAAAGGTAACTGCTCCAAACTCTTCCCTT
GTGGAAGCTCCTGAAATACAGAGGATCTCACAGATGCATCCGTGGATATTCTGTATTTCC
CAAATGCTCTGTTGTGTTTATATATTGCTTTTATACATAGAAAAATGATAAGTACTATTT
TTTTAGTTGTATCCTAAACCAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACTGACCAAGCGGAGCCGGAGACCAGTTTCCTAGGAGAAGACCCACCGTGGGTGGTG
CGCCCGGCGGACGGCGGCGGGATGGAAGCAACCTTGGAGCAGCACTTGGAGGACACAATG
AAGAATCCATCCATTGTTGGAGTCCTGTGCACAGATTCACAAGGACTCAATCTGGGATGC
CGAGGGACCCTGTCTGATGAGCATGCTGGGGTGATATCTGTCCTAGCCCAGCAAGCAGCT
AAGCTAACCTCAGACCCCACCGATATTCCTGTCGTGTGTCTAGAATCAGATAACGGGAAC
ATCATGATCCAGAAGCACGATGGCATCACAGTGGCCGTGCATAAAATGGCCTCTTGACAC
CCTGTGTCCATTCTCCTGCAGCCTGTCACAGGGCCTCATTCATACTTACCTTACAGAACT
ATTCAAGTTCCAGTAGTTAGGCTGTTCGTATAATGTGCATTGGGTGCTTTTCTATTAATT
TTAGAGTAAGCTGCTTTTTGCCATTCCATGGATTGACTTATCAAAATACTGGTTAGGAAA
GTATCATGTTTTGAAGCAGCAGGTTTAGGTCACTTTATATATAGAATCTTGTTATGTTTA
ATAAACCTGGTTAGAGGAAAAAAAAAAAAAAAAAAAGATTCTTTAAATTCTTATCAAATG
TTTATTTTTCAATTACCAAATTGTAATCTTTAAAAGGTAACTGCTCCAAACTCTTCCCTT
GTGGAAGCTCCTGAAATACAGAGGATCTCACAGATGCATCCGTGGATATTCTGTATTTCC
CAAATGCTCTGTTGTGTTTATATATTGCTTTTATACATAGAAAAATGATAAGTACTATTT
TTTTAGTTGTATCCTAAACCAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51512143|gb|AAU05316.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51512143|gb|AAU05316.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-329, - strand, RNAz p=0.830049

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-329, - strand, RNAz p=0.830049

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-631, gnl|bosTau2|chr14 (36862805-36863377)
               

               
               53-631, gnl|Hg17|chr1 (62216504-62217073)
               

               
               53-631, gnl|Mm7|chrX (154359451-154358748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-631, gnl|bosTau2|chr14 (36862805-36863377)
               

               
               53-631, gnl|Hg17|chr1 (62216504-62217073)
               

               
               53-631, gnl|Mm7|chrX (154359451-154358748)

Expressed library(ies): 54 entry(ies)

More info

Expressed library(ies): 54 entry(ies)

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               hea (0.817996)
               

               
               che (0.817884)
               

               
               eye (0.511509)
               

               
               sug (0.509165)
               

               
               cje (0.495704)
               

               
               ece (0.45861)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 54 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.817996)
               

               
               che (0.817884)
               

               
               eye (0.511509)
               

               
               sug (0.509165)
               

               
               cje (0.495704)
               

               
               ece (0.45861)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               spc (0.226732)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	53-631, gnl\|bosTau2\|chr14 (36862805-36863377)
	53-631, gnl\|Hg17\|chr1 (62216504-62217073)
	53-631, gnl\|Mm7\|chrX (154359451-154358748)

	hea (0.817996)
	che (0.817884)
	eye (0.511509)
	sug (0.509165)
	cje (0.495704)
	ece (0.45861)
	fcc (0.39557)
	elu (0.385356)
	nlu (0.383362)
	ebs (0.354904)
	fhi (0.339155)
	nco (0.323468)
	csp (0.322373)
	sme (0.305437)
	bfe (0.299715)
	eje (0.296501)
	cst (0.280073)
	cga (0.279096)
	hlv (0.278513)
	nca (0.273748)
	ssp (0.271039)
	ova (0.258264)
	pgl (0.236967)
	spc (0.226732)
	fli (0.202881)
	nbm (0.198649)
	gul (0.177588)
	ill (0.175593)
	rec (0.17307)
	cut (0.169924)
	nje (0.16592)
	cki (0.165235)
	fco (0.157208)
	cag (0.151194)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)