Ss1.1-Thy1-THY010203B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGGGTAGCAGTTTCGGCGCAGCTTGGGTCATGGTGCAGCTCCGGCCGCGCGCGTCTCG CGCCCCGGCCTCGGCGTCCGCGATGGTGGACGAGGGCCCGCCCGCCTCGGAGGAGGAGGC GGAGCACGGCCTGCTGCTTGGGCAGCCCAGCAGCGGCTCGGCCGCCGAGCCGCTGGAAGA AGACGAAGAGGATGATGAGCTTGACGACGAGGCCCCGGAGGAGCTCACTTTCGCCAGCGC CCAGGCGGAAGCAAAAGAAGAAGAGCGGCGAGTTCGGGAGACTGTGCGCAGGGATAAGAC GCTTCTGAAGGAGAAGAGGAAGCGACGCGAGGAGCTGTTCATCGAACAAAAGAAAAGAAA ACTTCTTCCAGATACTATCCTAGACAAGTTAACTGCAGCGTCACAGACTGATCTGAAGAA ATCACCGGTAAAGTTGAAAGAAGTTAAGTTGCAAAAGAAAAATGAAGAATGTGAGCAAGG AAGTGACTCCAAGAAAGCTAAAGTGCGAAAAGTACAGACTGTTGGCCAGAATAAAAGCTA CTTGGCTCTAAGGCTAAAAGACCAAGATTTGAGAGACTCAAGGCAGCAAGCAGCCAAAGC CTTCATACAAAATTGCTTATATGGTCCCGGAACCAACAGAACTACTGTAAACAAGTTCCT GTCTCTTGACAATAAGAGGTTACCAGTGAAAAAGGCTGCAGCCCAGTTTTTGAATCATGC TTGGGGATCCCAGAAAAAGCAAAATGCCAAGAGATTTAAAAGACGTTGGATGGTCAGAAA GATGAAAACTTCTAAGTAACACATCAAAGCTAAATGAAGAATGAGTACTTTGTATGTATA GAACTTACTTATTTAGAGGATTTAACTTTTCTGAAAAAATTAATCATTTTAAAGGGTCAT TATAAAAATCCTAAATCTGTTTGGGGATGTTTCATCCTCCTGGAGTATAATTATGCCTTG CAGGGTTTTTTTTGAGTCCTGGAAGAAAAAGCATTTTCAAAGGACTTCTTTCATTTATCC CTGTTTACCCGTAATACCCACACCACAGGGGCACCTCTGCTGCCCCTCCCTCCAGCCTGC AGCACGTGCAGCAGGTAAAGCTCCACTGCTGCTCTCGGATGCTTTAGTCCGTGGGATGTG TTGCTGCTGTTGACAAGAATCTCACAGACTGTGTGGAAGTGTGCAGTATCCTAGCACAGC TAAAAATTCCATTCTTTGTAAAGAAAGTTTAAGCCTCAGTGTACAAAACACAGCCAATAA ACACCTTTGCCAAACCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGGGTAGCAGTTTCGGCGCAGCTTGGGTCATGGTGCAGCTCCGGCCGCGCGCGTCTCG CGCCCCGGCCTCGGCGTCCGCGATGGTGGACGAGGGCCCGCCCGCCTCGGAGGAGGAGGC GGAGCACGGCCTGCTGCTTGGGCAGCCCAGCAGCGGCTCGGCCGCCGAGCCGCTGGAAGA AGACGAAGAGGATGATGAGCTTGACGACGAGGCCCCGGAGGAGCTCACTTTCGCCAGCGC CCAGGCGGAAGCAAAAGAAGAAGAGCGGCGAGTTCGGGAGACTGTGCGCAGGGATAAGAC GCTTCTGAAGGAGAAGAGGAAGCGACGCGAGGAGCTGTTCATCGAACAAAAGAAAAGAAA ACTTCTTCCAGATACTATCCTAGACAAGTTAACTGCAGCGTCACAGACTGATCTGAAGAA ATCACCGGTAAAGTTGAAAGAAGTTAAGTTGCAAAAGAAAAATGAAGAATGTGAGCAAGG AAGTGACTCCAAGAAAGCTAAAGTGCGAAAAGTACAGACTGTTGGCCAGAATAAAAGCTA CTTGGCTCTAAGGCTAAAAGACCAAGATTTGAGAGACTCAAGGCAGCAAGCAGCCAAAGC CTTCATACAAAATTGCTTATATGGTCCCGGAACCAACAGAACTACTGTAAACAAGTTCCT GTCTCTTGACAATAAGAGGTTACCAGTGAAAAAGGCTGCAGCCCAGTTTTTGAATCATGC TTGGGGATCCCAGAAAAAGCAAAATGCCAAGAGATTTAAAAGACGTTGGATGGTCAGAAA GATGAAAACTTCTAAGTAACACATCAAAGCTAAATGAAGAATGAGTACTTTGTATGTATA GAACTTACTTATTTAGAGGATTTAACTTTTCTGAAAAAATTAATCATTTTAAAGGGTCAT TATAAAAATCCTAAATCTGTTTGGGGATGTTTCATCCTCCTGGAGTATAATTATGCCTTG CAGGGTTTTTTTTGAGTCCTGGAAGAAAAAGCATTTTCAAAGGACTTCTTTCATTTATCC CTGTTTACCCGTAATACCCACACCACAGGGGCACCTCTGCTGCCCCTCCCTCCAGCCTGC AGCACGTGCAGCAGGTAAAGCTCCACTGCTGCTCTCGGATGCTTTAGTCCGTGGGATGTG TTGCTGCTGTTGACAAGAATCTCACAGACTGTGTGGAAGTGTGCAGTATCCTAGCACAGC TAAAAATTCCATTCTTTGTAAAGAAAGTTTAAGCCTCAGTGTACAAAACACAGCCAATAA ACACCTTTGCCAAACCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 978-1198, - strand, RNAz p=0.999145 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 978-1198, - strand, RNAz p=0.999145 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-292, gnl|bosTau2|chr23 (38892998-38893292) | |
| 1-292, gnl|canFam2|chr35 (16068305-16068511) | |
| 1-292, gnl|dasNov1|scaffold_59004 (5795-5598) | |
| 1-292, gnl|echTel1|scaffold_325025 (103992-103796) | |
| 1-292, gnl|galGal2|chr2 (60270061-60270303) | |
| 1-292, gnl|hg17|chr6 (13723547-13723747) | |
| 1-292, gnl|Hg17|chr6 (13723547-13723836) | |
| 1-292, gnl|loxAfr1|scaffold_21566 (919-1117) | |
| 1-292, gnl|mm7|chr13 (42838649-42838836) | |
| 1-292, gnl|Mm7|chr13 (42838649-42838925) | |
| 1-292, gnl|monDom2|scaffold_3 (101426520-101426723) | |
| 1-292, gnl|panTro1|chr5 (14015155-14015355) | |
| 1-292, gnl|rheMac2|chr4 (13582783-13582983) | |
| 1-292, gnl|rn3|chr17 (27135349-27135159) | |
| 525-647, gnl|bosTau2|chr23 (38896333-38896455) | |
| 525-647, gnl|canFam2|chr35 (16071649-16071795) | |
| 525-647, gnl|danRer3|chr24 (7442630-7442792) | |
| 525-647, gnl|dasNov1|scaffold_59004 (2571-2431) | |
| 525-647, gnl|echTel1|scaffold_325025 (101481-101335) | |
| 525-647, gnl|galGal2|chr2 (60271615-60271765) | |
| 525-647, gnl|hg17|chr6 (13728403-13728549) | |
| 525-647, gnl|Hg17|chr6 (13728418-13728540) | |
| 525-647, gnl|loxAfr1|scaffold_21566 (3704-3826) | |
| 525-647, gnl|mm7|chr13 (42841547-42841693) | |
| 525-647, gnl|Mm7|chr13 (42841562-42841684) | |
| 525-647, gnl|monDom2|scaffold_3 (101432015-101432165) | |
| 525-647, gnl|oryCun1|scaffold_205544 (45061-44914) | |
| 525-647, gnl|panTro1|chr5 (14019669-14019815) | |
| 525-647, gnl|rheMac2|chr4 (13586148-13586294) | |
| 525-647, gnl|rn3|chr17 (27132800-27132661) | |
| 525-647, gnl|xenTro1|scaffold_923 (294390-294532) | |
| 725-1279, gnl|bosTau2|chr23 (38897057-38897624) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-292, gnl|bosTau2|chr23 (38892998-38893292) | |
| 1-292, gnl|canFam2|chr35 (16068305-16068511) | |
| 1-292, gnl|dasNov1|scaffold_59004 (5795-5598) | |
| 1-292, gnl|echTel1|scaffold_325025 (103992-103796) | |
| 1-292, gnl|galGal2|chr2 (60270061-60270303) | |
| 1-292, gnl|hg17|chr6 (13723547-13723747) | |
| 1-292, gnl|Hg17|chr6 (13723547-13723836) | |
| 1-292, gnl|loxAfr1|scaffold_21566 (919-1117) | |
| 1-292, gnl|mm7|chr13 (42838649-42838836) | |
| 1-292, gnl|Mm7|chr13 (42838649-42838925) | |
| 1-292, gnl|monDom2|scaffold_3 (101426520-101426723) | |
| 1-292, gnl|panTro1|chr5 (14015155-14015355) | |
| 1-292, gnl|rheMac2|chr4 (13582783-13582983) | |
| 1-292, gnl|rn3|chr17 (27135349-27135159) | |
| 525-647, gnl|bosTau2|chr23 (38896333-38896455) | |
| 525-647, gnl|canFam2|chr35 (16071649-16071795) | |
| 525-647, gnl|danRer3|chr24 (7442630-7442792) | |
| 525-647, gnl|dasNov1|scaffold_59004 (2571-2431) | |
| 525-647, gnl|echTel1|scaffold_325025 (101481-101335) | |
| 525-647, gnl|galGal2|chr2 (60271615-60271765) | |
| 525-647, gnl|hg17|chr6 (13728403-13728549) | |
| 525-647, gnl|Hg17|chr6 (13728418-13728540) | |
| 525-647, gnl|loxAfr1|scaffold_21566 (3704-3826) | |
| 525-647, gnl|mm7|chr13 (42841547-42841693) | |
| 525-647, gnl|Mm7|chr13 (42841562-42841684) | |
| 525-647, gnl|monDom2|scaffold_3 (101432015-101432165) | |
| 525-647, gnl|oryCun1|scaffold_205544 (45061-44914) | |
| 525-647, gnl|panTro1|chr5 (14019669-14019815) | |
| 525-647, gnl|rheMac2|chr4 (13586148-13586294) | |
| 525-647, gnl|rn3|chr17 (27132800-27132661) | |
| 525-647, gnl|xenTro1|scaffold_923 (294390-294532) | |
| 725-1279, gnl|bosTau2|chr23 (38897057-38897624) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| tbr (0.462535) | |
| mas (0.42061) | |
| cty (0.41632) | |
| elu (0.385356) | |
| bla (0.373042) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| med (0.232504) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.462535) | |
| mas (0.42061) | |
| cty (0.41632) | |
| elu (0.385356) | |
| bla (0.373042) | |
| ski (0.29347) | |
| lin (0.291206) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| med (0.232504) | |
| col (0.195008) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| eru (0.120048) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |