Ss1.1-Thy1-THY010203B03.5
|
AGAAGAATTACAGAAGAGAAAGCTGGAACTGGTAGCTCAAGCCATCACCCTTCCGCTGGC
TGGAACAACTGGACTGACCCTTTTAAGATGTGTTTGCAGGGTGGTGGGAACATGGATAGT
TGTCAGCTTTGCAGAGCGCACGTGTGTGCGTGCATGTGTGTGTGTGCGCGCGCTTGCGCG
AGAGTGTGTGGTCTCTATGCTGAAGTCAAGTGTGTGTTGGAGGACTACTTATCTCTTTGG
TGAGACTAGTTTTGTTGTGGGGACGGGAGAAATGAGGTTCCTGTGCTCCTTCTTAGTACA
AACAGGAAAATCCCCAAAGCCCTGCTCTCCAGCAACCTGGGCTGGTCCCTGGCTCCCTGT
GCCACTTCTGGTTCCTGCCTTACACTGGAGCTTCTGGACATTGGACCCTCATTCCAGAGT
CCTCTTGTCACAGGAGGAGGGCACCCTGGGCAAAGCTGGTGCTGTGCTCCCAGTTATACT
GGGTCTGATCCTCTCGGGGAGAGGAAGAGCACCCACCCTCCCACCTCGGCCAGCCCTCCC
ACCTGGGCCAACCAGATGCACAAGGAGGCTTCCCCCAGGCTGCAGGGAAAGCTGCTCCAG
AGCCTGCGACAGGATGTCTCCCATCACTTGGAGAATCACTTCTTTAGTAGTAAAGTAGTG
CTCCTGCTTTATTTGGTGGTGTAGGTGTGCGTGAGAGCAGCAATGAGCAAGGACGACCTG
CCTGTCACTACGTCCCTCTCCCTACACAGACCCCTCTTTGCCCTCACATCTGTTTCTCCC
TCTCCCCAGCACCCCTAGCCTATTTATTAACTGGCAAGAGGGCAAATAAGGGGTCTTCTA
GGGTTGACTTTGCTTATGTCGGTGGAGGATACCAAGCGCCACTTTGCCATCATCTGCTCC
CTTATCTGGAAATTCCTCGCAGAACTGAGCTTTCTTTGCATCAAGGATCCAGAAAGAAAA
ACAAAAACCAAATCAAACCGTCACACACCAATAAAAAGTAAACTTTCCAGATGGAGGTAA
TATCTAATTAGGCAATAAAAGTAGAGACTGTGACACGGTTCAATAAGAATGAGATTTTTG
AAGTATGTTTCAGTTTTGTATGGTGGCTGGGAGACGGGGTGGGAGGGATGTGAAAGAAAG
AGCACAGGGAAGCAGAGGTGAATCATTGCTCCTGTATGTCTGAGGCGAATGGTCCCTCCC
TCCCTAGGTCACTGTGAGGAGTATGAGTCAGTTGTTACCAGCCTTGGAATTTACCTCCCC
AGCTTGCAACAGCCCCTATGAGTTGAAAAACACCTTGTCTGCTTTCATTTTAGAATGTTA
AAACTAATTTTTTTGTAATAAATGTTTATTTTTCAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGAAGAATTACAGAAGAGAAAGCTGGAACTGGTAGCTCAAGCCATCACCCTTCCGCTGGC
TGGAACAACTGGACTGACCCTTTTAAGATGTGTTTGCAGGGTGGTGGGAACATGGATAGT
TGTCAGCTTTGCAGAGCGCACGTGTGTGCGTGCATGTGTGTGTGTGCGCGCGCTTGCGCG
AGAGTGTGTGGTCTCTATGCTGAAGTCAAGTGTGTGTTGGAGGACTACTTATCTCTTTGG
TGAGACTAGTTTTGTTGTGGGGACGGGAGAAATGAGGTTCCTGTGCTCCTTCTTAGTACA
AACAGGAAAATCCCCAAAGCCCTGCTCTCCAGCAACCTGGGCTGGTCCCTGGCTCCCTGT
GCCACTTCTGGTTCCTGCCTTACACTGGAGCTTCTGGACATTGGACCCTCATTCCAGAGT
CCTCTTGTCACAGGAGGAGGGCACCCTGGGCAAAGCTGGTGCTGTGCTCCCAGTTATACT
GGGTCTGATCCTCTCGGGGAGAGGAAGAGCACCCACCCTCCCACCTCGGCCAGCCCTCCC
ACCTGGGCCAACCAGATGCACAAGGAGGCTTCCCCCAGGCTGCAGGGAAAGCTGCTCCAG
AGCCTGCGACAGGATGTCTCCCATCACTTGGAGAATCACTTCTTTAGTAGTAAAGTAGTG
CTCCTGCTTTATTTGGTGGTGTAGGTGTGCGTGAGAGCAGCAATGAGCAAGGACGACCTG
CCTGTCACTACGTCCCTCTCCCTACACAGACCCCTCTTTGCCCTCACATCTGTTTCTCCC
TCTCCCCAGCACCCCTAGCCTATTTATTAACTGGCAAGAGGGCAAATAAGGGGTCTTCTA
GGGTTGACTTTGCTTATGTCGGTGGAGGATACCAAGCGCCACTTTGCCATCATCTGCTCC
CTTATCTGGAAATTCCTCGCAGAACTGAGCTTTCTTTGCATCAAGGATCCAGAAAGAAAA
ACAAAAACCAAATCAAACCGTCACACACCAATAAAAAGTAAACTTTCCAGATGGAGGTAA
TATCTAATTAGGCAATAAAAGTAGAGACTGTGACACGGTTCAATAAGAATGAGATTTTTG
AAGTATGTTTCAGTTTTGTATGGTGGCTGGGAGACGGGGTGGGAGGGATGTGAAAGAAAG
AGCACAGGGAAGCAGAGGTGAATCATTGCTCCTGTATGTCTGAGGCGAATGGTCCCTCCC
TCCCTAGGTCACTGTGAGGAGTATGAGTCAGTTGTTACCAGCCTTGGAATTTACCTCCCC
AGCTTGCAACAGCCCCTATGAGTTGAAAAACACCTTGTCTGCTTTCATTTTAGAATGTTA
AAACTAATTTTTTTGTAATAAATGTTTATTTTTCAC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
11-166, gnl|bosTau2|chr3 (7801603-7801760) |
|
11-166, gnl|canFam2|chr38 (24455113-24454856) |
|
11-166, gnl|echTel1|scaffold_238802 (13376-13256) |
|
11-166, gnl|hg17|chr1 (157780622-157780820) |
|
11-166, gnl|Hg17|chr1 (157780879-157780649) |
|
11-166, gnl|loxAfr1|scaffold_156718 (4063-3887) |
|
11-166, gnl|mm7|chr1 (171434043-171433795) |
|
11-166, gnl|Mm7|chr1 (171433786-171433945) |
|
11-166, gnl|panTro1|chr1 (139845963-139846161) |
|
11-166, gnl|rheMac2|chr1 (139612719-139612919) |
|
11-166, gnl|rn3|chr13 (87582342-87582096) |
| |
|
534-1356, gnl|bosTau2|chr3 (7801885-7802704) |
|
534-1356, gnl|Hg17|chr1 (157780261-157779062) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
11-166, gnl|bosTau2|chr3 (7801603-7801760) |
|
11-166, gnl|canFam2|chr38 (24455113-24454856) |
|
11-166, gnl|echTel1|scaffold_238802 (13376-13256) |
|
11-166, gnl|hg17|chr1 (157780622-157780820) |
|
11-166, gnl|Hg17|chr1 (157780879-157780649) |
|
11-166, gnl|loxAfr1|scaffold_156718 (4063-3887) |
|
11-166, gnl|mm7|chr1 (171434043-171433795) |
|
11-166, gnl|Mm7|chr1 (171433786-171433945) |
|
11-166, gnl|panTro1|chr1 (139845963-139846161) |
|
11-166, gnl|rheMac2|chr1 (139612719-139612919) |
|
11-166, gnl|rn3|chr13 (87582342-87582096) |
| |
|
534-1356, gnl|bosTau2|chr3 (7801885-7802704) |
|
534-1356, gnl|Hg17|chr1 (157780261-157779062) |
|
pla (0.534688) |
|
elu (0.385356) |
|
ton (0.351) |
|
cje (0.330469) |
|
eli (0.303628) |
|
cte (0.29274) |
|
ute (0.265569) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fco (0.157208) |
|
cli (0.152812) |
|
cst (0.140036) |
|
che (0.136314) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
bla (0.124347) |
|
cly (0.120642) |
|
spc (0.113366) |
|
pla (0.534688) |
|
elu (0.385356) |
|
ton (0.351) |
|
cje (0.330469) |
|
eli (0.303628) |
|
cte (0.29274) |
|
ute (0.265569) |
|
nbm (0.198649) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
sag (0.182715) |
|
sto (0.179824) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
mga (0.160205) |
|
fco (0.157208) |
|
cli (0.152812) |
|
cst (0.140036) |
|
che (0.136314) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
bla (0.124347) |
|
cly (0.120642) |
|
spc (0.113366) |
