Ss1.1-Thy1-THY010203B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACACATCCCTCACACTGTCCAGAGCGGAGATGGCGGCGGCGGCGGCCCGAGCGGTGTT TTTGCCCGCGGTGCGGAAGCGGCTCTGGGGTTTCTCCAAGAGGCTCTTGGTCGGAGGCCC TGCAAGGCAGTCATTATATTTTGGAGGAAACAGATTGAGAAGTACACAGGCTGCTACACA AGTTTTTCTGAATGTTCCTGAAACGAGAGTAACCTGTTTGGAGAACGGACTCAGAGTGGC CTCTGAAGACTCTGGGCTCTCAACATGCACAGTTGGGCTTTGGATTGATGCTGGGAGTCG ATATGAAAATGAGAAGAATAATGGAACAGCTCACTTTCTGGAACATATGGCTTTCAAGGG CACCAAAAAGAGATCCCAGTTAGATTTGGAACTTGAGATTGAAAACATGGGTGCTCATCT CAATGCCTATACCTCCAGAGAGCAGACTGTATATTATGCCAAAGCATTCTCTAAAGATTT GCCAAGAGCTGTAGAAATTCTTGCTGATATAATACAAAACAGCACATTGGGAGAAGCAGA GATTGAACGTGAACGTGGAGTGATCCTTAGAGAGATGCAGGAAGTCGAAACCAATTTACA GGAAGTTGTTTTTGATTATCTTCATGCCACAGCTTATCAAAATACTGCACTTGGACGGAC AATTTTGGGACCAACTGAAAATATCAAATCTATAAATCGTAAGGACTTAGTCGATTATAT AACCACACATTATAAGGGACCAAGAATAGTTCTTGCTGCTGCTGGAGGAGTTTCCCATGA TGAACTGCTTGAATTGGCGAAGTTTCATTTTGGTGACTCTTTGTCCCCAGACGAAGGAGA AATACCAGCTCTGCCTCCCTGCAAATTCACAGGAAGTGAGATCCGAGTGAGGGATGACAA GATGCCTTTGGCACACCTTGCAATAGCTGTTGAAGCTGTCGGTTGGGCACATCCAGATAC AATCTGTCTCATGGTTGCAAACACATTGATTGGCAACTGGGATCGCTCCTTTGGAGGAGG AATGAATTTATCTAGCAAGCTGGCCCAGCTCACCTGTCATGGCAACCTCTGCCATAGCTT CCAGTCTTTCAACACTTCCTACACAGATACAGGATTATGGGGAATCTACATGGTTTGTGA ACCAGCCACTGTTGCAGACATGCTCCATGTTGTTCAAAAAGAATGGATGCGACTCTGTAC AAGTGTCACTGAAAGTGAAGTTGCACGAGCCAAAAATCTTCTGAAAACAAACATGTTGCT GCAACTTGATGGTTCCACTCCCATCTGTGAAGATATTGGTAGGCAGATGTTATGCTATAA TAGAAGAATTCCCATCCCTGAGCTTGAAGCAAGAATTGATGCTGTAAATGCTGAGACAAT TCGAGAAGTATGTACCAAATATATTTATGATAAGAGTCCAGCTGTTGCTGCTGTTGGTCC CATTGAGCAGTTACCAGATTTTAACCAGATTCGCAGTAACATGTGTTGGCTTCGTGATTA AGTTTCTTAATAAAAATATTTTGAACACAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACACATCCCTCACACTGTCCAGAGCGGAGATGGCGGCGGCGGCGGCCCGAGCGGTGTT TTTGCCCGCGGTGCGGAAGCGGCTCTGGGGTTTCTCCAAGAGGCTCTTGGTCGGAGGCCC TGCAAGGCAGTCATTATATTTTGGAGGAAACAGATTGAGAAGTACACAGGCTGCTACACA AGTTTTTCTGAATGTTCCTGAAACGAGAGTAACCTGTTTGGAGAACGGACTCAGAGTGGC CTCTGAAGACTCTGGGCTCTCAACATGCACAGTTGGGCTTTGGATTGATGCTGGGAGTCG ATATGAAAATGAGAAGAATAATGGAACAGCTCACTTTCTGGAACATATGGCTTTCAAGGG CACCAAAAAGAGATCCCAGTTAGATTTGGAACTTGAGATTGAAAACATGGGTGCTCATCT CAATGCCTATACCTCCAGAGAGCAGACTGTATATTATGCCAAAGCATTCTCTAAAGATTT GCCAAGAGCTGTAGAAATTCTTGCTGATATAATACAAAACAGCACATTGGGAGAAGCAGA GATTGAACGTGAACGTGGAGTGATCCTTAGAGAGATGCAGGAAGTCGAAACCAATTTACA GGAAGTTGTTTTTGATTATCTTCATGCCACAGCTTATCAAAATACTGCACTTGGACGGAC AATTTTGGGACCAACTGAAAATATCAAATCTATAAATCGTAAGGACTTAGTCGATTATAT AACCACACATTATAAGGGACCAAGAATAGTTCTTGCTGCTGCTGGAGGAGTTTCCCATGA TGAACTGCTTGAATTGGCGAAGTTTCATTTTGGTGACTCTTTGTCCCCAGACGAAGGAGA AATACCAGCTCTGCCTCCCTGCAAATTCACAGGAAGTGAGATCCGAGTGAGGGATGACAA GATGCCTTTGGCACACCTTGCAATAGCTGTTGAAGCTGTCGGTTGGGCACATCCAGATAC AATCTGTCTCATGGTTGCAAACACATTGATTGGCAACTGGGATCGCTCCTTTGGAGGAGG AATGAATTTATCTAGCAAGCTGGCCCAGCTCACCTGTCATGGCAACCTCTGCCATAGCTT CCAGTCTTTCAACACTTCCTACACAGATACAGGATTATGGGGAATCTACATGGTTTGTGA ACCAGCCACTGTTGCAGACATGCTCCATGTTGTTCAAAAAGAATGGATGCGACTCTGTAC AAGTGTCACTGAAAGTGAAGTTGCACGAGCCAAAAATCTTCTGAAAACAAACATGTTGCT GCAACTTGATGGTTCCACTCCCATCTGTGAAGATATTGGTAGGCAGATGTTATGCTATAA TAGAAGAATTCCCATCCCTGAGCTTGAAGCAAGAATTGATGCTGTAAATGCTGAGACAAT TCGAGAAGTATGTACCAAATATATTTATGATAAGAGTCCAGCTGTTGCTGCTGTTGGTCC CATTGAGCAGTTACCAGATTTTAACCAGATTCGCAGTAACATGTGTTGGCTTCGTGATTA AGTTTCTTAATAAAAATATTTTGAACACAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 766-880, - strand, RNAz p=0.632296 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 766-880, - strand, RNAz p=0.632296 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 24-371, gnl|bosTau2|chr6 (36257600-36257257) | |
| 24-371, gnl|Hg17|chr7 (102531851-102534588) | |
| 128-288, gnl|bosTau2|chr4 (21887456-21887617) | |
| 128-288, gnl|canFam2|chr18 (19895454-19895305) | |
| 128-288, gnl|danRer3|chr4 (1386531-1386643) | |
| 128-288, gnl|dasNov1|scaffold_36642 (36285-36136) | |
| 128-288, gnl|echTel1|scaffold_228074 (2908-3057) | |
| 128-288, gnl|fr1|chrUn (112440970-112440834) | |
| 128-288, gnl|galGal2|chr1 (10718937-10718828) | |
| 128-288, gnl|hg17|chr7 (102532964-102533113) | |
| 128-288, gnl|Hg17|chr7 (102532963-102533137) | |
| 128-288, gnl|loxAfr1|scaffold_8592 (84751-84602) | |
| 128-288, gnl|mm7|chr5 (20776829-20776978) | |
| 128-288, gnl|Mm7|chr5 (20776828-20776976) | |
| 128-288, gnl|monDom2|scaffold_30 (29280928-29281076) | |
| 128-288, gnl|oryCun1|scaffold_4290 (5786-5644) | |
| 128-288, gnl|panTro1|chr6 (104355199-104355348) | |
| 128-288, gnl|rn3|chr4 (8757558-8757409) | |
| 128-288, gnl|tetNig1|chrUn_random (111322236-111322363) | |
| 128-288, gnl|xenTro1|scaffold_61 (1912603-1912749) | |
| 395-711, gnl|bosTau2|chr6 (36257258-36256944) | |
| 395-711, gnl|Hg17|chr7 (102534587-102538462) | |
| 395-711, gnl|Mm7|chr5 (20778458-20780929) | |
| 477-687, gnl|bosTau2|chr4 (21890966-21891176) | |
| 477-687, gnl|Hg17|chr7 (102538228-102538438) | |
| 477-687, gnl|Mm7|chr5 (20780693-20780918) | |
| 713-1529, gnl|bosTau2|chr6 (36256823-36256036) | |
| 713-1529, gnl|Hg17|chr7 (102538834-102546618) | |
| 766-880, gnl|bosTau2|chr4 (21894104-21894218) | |
| 766-880, gnl|canFam2|chr18 (19887407-19887267) | |
| 766-880, gnl|danRer3|chrUn (21093444-21093580) | |
| 766-880, gnl|dasNov1|scaffold_17885 (11136-10995) | |
| 766-880, gnl|echTel1|scaffold_304129 (5937-6079) | |
| 766-880, gnl|fr1|chrUn (112439748-112439598) | |
| 766-880, gnl|galGal2|chr1 (10715869-10715733) | |
| 766-880, gnl|hg17|chr7 (102541973-102542114) | |
| 766-880, gnl|Hg17|chr7 (102541992-102542106) | |
| 766-880, gnl|loxAfr1|scaffold_8592 (70928-70787) | |
| 766-880, gnl|mm7|chr5 (20783919-20784060) | |
| 766-880, gnl|Mm7|chr5 (20783938-20784052) | |
| 766-880, gnl|monDom2|scaffold_30 (29288022-29288184) | |
| 766-880, gnl|oryCun1|scaffold_189791 (8541-8682) | |
| 766-880, gnl|panTro1|chr6 (104364288-104364429) | |
| 766-880, gnl|rheMac2|chr3 (140696828-140696969) | |
| 766-880, gnl|rn3|chr4 (8750708-8750567) | |
| 766-880, gnl|xenTro1|scaffold_61 (1915809-1915953) | |
| 1024-1186, gnl|bosTau2|chr4 (21897876-21898038) | |
| 1024-1186, gnl|canFam2|chr18 (19885180-19885003) | |
| 1024-1186, gnl|danRer3|chr4 (1392405-1392579) | |
| 1024-1186, gnl|dasNov1|scaffold_17885 (9216-9030) | |
| 1024-1186, gnl|echTel1|scaffold_304129 (7728-7903) | |
| 1024-1186, gnl|fr1|chrUn (112439066-112438888) | |
| 1024-1186, gnl|galGal2|chr1 (10714471-10714287) | |
| 1024-1186, gnl|hg17|chr7 (102544695-102544873) | |
| 1024-1186, gnl|Hg17|chr7 (102544712-102544874) | |
| 1024-1186, gnl|loxAfr1|scaffold_8592 (69124-68946) | |
| 1024-1186, gnl|mm7|chr5 (20786693-20786871) | |
| 1024-1186, gnl|Mm7|chr5 (20786710-20786872) | |
| 1024-1186, gnl|monDom2|scaffold_30 (29294634-29294812) | |
| 1024-1186, gnl|oryCun1|scaffold_4290 (4879-4719) | |
| 1024-1186, gnl|panTro1|chr6 (104367015-104367193) | |
| 1024-1186, gnl|rheMac2|chr3 (140699788-140699967) | |
| 1024-1186, gnl|rn3|chr4 (8748623-8748447) | |
| 1024-1186, gnl|tetNig1|chr11 (1022890-1022715) | |
| 1024-1186, gnl|xenTro1|scaffold_61 (1917006-1917186) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-371, gnl|bosTau2|chr6 (36257600-36257257) | |
| 24-371, gnl|Hg17|chr7 (102531851-102534588) | |
| 128-288, gnl|bosTau2|chr4 (21887456-21887617) | |
| 128-288, gnl|canFam2|chr18 (19895454-19895305) | |
| 128-288, gnl|danRer3|chr4 (1386531-1386643) | |
| 128-288, gnl|dasNov1|scaffold_36642 (36285-36136) | |
| 128-288, gnl|echTel1|scaffold_228074 (2908-3057) | |
| 128-288, gnl|fr1|chrUn (112440970-112440834) | |
| 128-288, gnl|galGal2|chr1 (10718937-10718828) | |
| 128-288, gnl|hg17|chr7 (102532964-102533113) | |
| 128-288, gnl|Hg17|chr7 (102532963-102533137) | |
| 128-288, gnl|loxAfr1|scaffold_8592 (84751-84602) | |
| 128-288, gnl|mm7|chr5 (20776829-20776978) | |
| 128-288, gnl|Mm7|chr5 (20776828-20776976) | |
| 128-288, gnl|monDom2|scaffold_30 (29280928-29281076) | |
| 128-288, gnl|oryCun1|scaffold_4290 (5786-5644) | |
| 128-288, gnl|panTro1|chr6 (104355199-104355348) | |
| 128-288, gnl|rn3|chr4 (8757558-8757409) | |
| 128-288, gnl|tetNig1|chrUn_random (111322236-111322363) | |
| 128-288, gnl|xenTro1|scaffold_61 (1912603-1912749) | |
| 395-711, gnl|bosTau2|chr6 (36257258-36256944) | |
| 395-711, gnl|Hg17|chr7 (102534587-102538462) | |
| 395-711, gnl|Mm7|chr5 (20778458-20780929) | |
| 477-687, gnl|bosTau2|chr4 (21890966-21891176) | |
| 477-687, gnl|Hg17|chr7 (102538228-102538438) | |
| 477-687, gnl|Mm7|chr5 (20780693-20780918) | |
| 713-1529, gnl|bosTau2|chr6 (36256823-36256036) | |
| 713-1529, gnl|Hg17|chr7 (102538834-102546618) | |
| 766-880, gnl|bosTau2|chr4 (21894104-21894218) | |
| 766-880, gnl|canFam2|chr18 (19887407-19887267) | |
| 766-880, gnl|danRer3|chrUn (21093444-21093580) | |
| 766-880, gnl|dasNov1|scaffold_17885 (11136-10995) | |
| 766-880, gnl|echTel1|scaffold_304129 (5937-6079) | |
| 766-880, gnl|fr1|chrUn (112439748-112439598) | |
| 766-880, gnl|galGal2|chr1 (10715869-10715733) | |
| 766-880, gnl|hg17|chr7 (102541973-102542114) | |
| 766-880, gnl|Hg17|chr7 (102541992-102542106) | |
| 766-880, gnl|loxAfr1|scaffold_8592 (70928-70787) | |
| 766-880, gnl|mm7|chr5 (20783919-20784060) | |
| 766-880, gnl|Mm7|chr5 (20783938-20784052) | |
| 766-880, gnl|monDom2|scaffold_30 (29288022-29288184) | |
| 766-880, gnl|oryCun1|scaffold_189791 (8541-8682) | |
| 766-880, gnl|panTro1|chr6 (104364288-104364429) | |
| 766-880, gnl|rheMac2|chr3 (140696828-140696969) | |
| 766-880, gnl|rn3|chr4 (8750708-8750567) | |
| 766-880, gnl|xenTro1|scaffold_61 (1915809-1915953) | |
| 1024-1186, gnl|bosTau2|chr4 (21897876-21898038) | |
| 1024-1186, gnl|canFam2|chr18 (19885180-19885003) | |
| 1024-1186, gnl|danRer3|chr4 (1392405-1392579) | |
| 1024-1186, gnl|dasNov1|scaffold_17885 (9216-9030) | |
| 1024-1186, gnl|echTel1|scaffold_304129 (7728-7903) | |
| 1024-1186, gnl|fr1|chrUn (112439066-112438888) | |
| 1024-1186, gnl|galGal2|chr1 (10714471-10714287) | |
| 1024-1186, gnl|hg17|chr7 (102544695-102544873) | |
| 1024-1186, gnl|Hg17|chr7 (102544712-102544874) | |
| 1024-1186, gnl|loxAfr1|scaffold_8592 (69124-68946) | |
| 1024-1186, gnl|mm7|chr5 (20786693-20786871) | |
| 1024-1186, gnl|Mm7|chr5 (20786710-20786872) | |
| 1024-1186, gnl|monDom2|scaffold_30 (29294634-29294812) | |
| 1024-1186, gnl|oryCun1|scaffold_4290 (4879-4719) | |
| 1024-1186, gnl|panTro1|chr6 (104367015-104367193) | |
| 1024-1186, gnl|rheMac2|chr3 (140699788-140699967) | |
| 1024-1186, gnl|rn3|chr4 (8748623-8748447) | |
| 1024-1186, gnl|tetNig1|chr11 (1022890-1022715) | |
| 1024-1186, gnl|xenTro1|scaffold_61 (1917006-1917186) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| pro (1.02407) | |
| hea (0.613497) | |
| aor (0.390549) | |
| cmu (0.372787) | |
| vin (0.332557) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| kid (0.259471) | |
| ova (0.258264) | |
| sug (0.254582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| hea (0.613497) | |
| aor (0.390549) | |
| cmu (0.372787) | |
| vin (0.332557) | |
| fat (0.294855) | |
| ldo (0.291008) | |
| kid (0.259471) | |
| ova (0.258264) | |
| sug (0.254582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| med (0.116252) | |
| spc (0.113366) | |
| cty (0.10408) |