Non-Coding RNA Search

Ss1.1-Thy1-THY010203C04.5

Sequence:


               
               AGTAAAAAGTTGACCTGAGGAGTACAGTATGGCAGCCCAGAGGAGAGCCTGGTGTGGTCC
AGGAGGTGACGGCTGCCTCTGCCTCAAGTTCCCAACTCAGCTAGCACTGTCTGCCCACCC
TTCAAGTCCTGTGGCACCTTATAAAACAGAAATATGCAGGCAGCTCTGGGGTGACACCTC
AGGTTGTCATGGCGGCTGGGAATGGGTCTTAACATAATATGATTCACTTTCAAGACCCAG
TTCCCCCCCGACGGGCAGAGGGGTCTGAAGCATGGAGCAAGCATTTTGGGATGGGGGGTA
CTGCTTTCTCCTAGTCCCTTTTAGCAGCTCGTAGAGAGGAGGGCAGTAAGGGGGTGAGAG
CAGAGAGCAGGACTGGATCCCACAGTATCTGCCTCTGCCTTCCGCAGCTCAGCAACAGAG
AAGGAGGTGGAGTCTGGATTGAGCCCCAAGATAAGGACTTTGCAGCAGCTGACTGAGAAG
ATCAAAATAAACAGCTGTGCCCCCAGGAGAATGGACTCCGCATTCCGTTCCTGACCCCGC
CCCCAATTCCCACTTCTCTCCAGTGCCTCCCTGCCCCCCACATGCACACTCAGCATCCCC
ATGGGCTGGAAGGGCCTCCCCTCAGCCTTGGCTTAGGTCCCTTAGAACCTTCCCACACCC
GCCCAGTCTCCAGTAACCAGAGGCTCGGGGTGCGCTCCAGCTGTCTGGAAGGGAGTGAGT
GCCCCCGACAGGTGGCCGGAGGCGGATGGGGACAGGGGGCCTCGTCCAGGGCCTTGCTCC
ACCTGCCAGGCTGGGCCACCCTCAGGCTCACACGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAAAAGTTGACCTGAGGAGTACAGTATGGCAGCCCAGAGGAGAGCCTGGTGTGGTCC
AGGAGGTGACGGCTGCCTCTGCCTCAAGTTCCCAACTCAGCTAGCACTGTCTGCCCACCC
TTCAAGTCCTGTGGCACCTTATAAAACAGAAATATGCAGGCAGCTCTGGGGTGACACCTC
AGGTTGTCATGGCGGCTGGGAATGGGTCTTAACATAATATGATTCACTTTCAAGACCCAG
TTCCCCCCCGACGGGCAGAGGGGTCTGAAGCATGGAGCAAGCATTTTGGGATGGGGGGTA
CTGCTTTCTCCTAGTCCCTTTTAGCAGCTCGTAGAGAGGAGGGCAGTAAGGGGGTGAGAG
CAGAGAGCAGGACTGGATCCCACAGTATCTGCCTCTGCCTTCCGCAGCTCAGCAACAGAG
AAGGAGGTGGAGTCTGGATTGAGCCCCAAGATAAGGACTTTGCAGCAGCTGACTGAGAAG
ATCAAAATAAACAGCTGTGCCCCCAGGAGAATGGACTCCGCATTCCGTTCCTGACCCCGC
CCCCAATTCCCACTTCTCTCCAGTGCCTCCCTGCCCCCCACATGCACACTCAGCATCCCC
ATGGGCTGGAAGGGCCTCCCCTCAGCCTTGGCTTAGGTCCCTTAGAACCTTCCCACACCC
GCCCAGTCTCCAGTAACCAGAGGCTCGGGGTGCGCTCCAGCTGTCTGGAAGGGAGTGAGT
GCCCCCGACAGGTGGCCGGAGGCGGATGGGGACAGGGGGCCTCGTCCAGGGCCTTGCTCC
ACCTGCCAGGCTGGGCCACCCTCAGGCTCACACGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               416-534, + strand, RNAz p=0.957836
               

               
               575-685, - strand, RNAz p=0.974463

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-534, + strand, RNAz p=0.957836
               

               
               575-685, - strand, RNAz p=0.974463

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               487-583, - strand, RNAmicro p=0.914651

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               487-583, - strand, RNAmicro p=0.914651

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-812, gnl|bosTau2|chr23 (13448063-13448877)
               

               
               4-812, gnl|Hg17|chr6 (42107185-42106408)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-812, gnl|bosTau2|chr23 (13448063-13448877)
               

               
               4-812, gnl|Hg17|chr6 (42107185-42106408)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	416-534, + strand, RNAz p=0.957836
	575-685, - strand, RNAz p=0.974463

	4-812, gnl\|bosTau2\|chr23 (13448063-13448877)
	4-812, gnl\|Hg17\|chr6 (42107185-42106408)