Non-Coding RNA Search

Ss1.1-Thy1-THY010203D02.5

Sequence:


               
               ATTGCCGCGCGCCGAGGTCGCGCGGAGCCGGTCCTCGGAAGAGCTGAGGGGCTGTGCAGC
CGGGCAGTGAGAGCTGTCTGGCCTTAAGCCCTTCATCCTTGGGGAAGGAAATGACTAACC
AGTACAGTATTCTCTTCAAACAAGAGCAAGCCCATGATGATGCCATTTGGTCAGTTGCCT
GGGGGACAAACAAGAAAGAAAACTCAGAGACAGTGGTCACAGGATCCCTGGATGACCTGG
TGAAGGTCTGGAAATGGCGTGATGAGAAGCTGGATCTACAGTGGAGCCTGGAGGGCCATC
AGCTGGGTGTGGTGTCTGTGGACATAAGCCACACCCTGCCCATTGCTGCATCCAGTTCTC
TTGATGCTCATATTCGTCTCTGGGACTTGGAAAACGGCAAACAGATAAAGTCTATAGATG
CAGGACCTGTGGATGCCTGGACTTTGGCCTTTTCTCCTGATTCCCAGTATCTGGCCACAG
GAACTCATGTGGGGAAAGTGAACATTTTTGGTGTTGAAAGTGGGAAAAAGGAATATTCTT
TGGACACAAGAGGAAAATTCATTCTTAGTATTGCATATAGTCCTGATGGGAAGTATCTGG
CCAGTGGCGCTATAGACGGAATCATCAATATTTTTGATATTGCAACTGGAAAACTTCTTC
ATACGCTGGAAGGCCATGCTATGCCCATTCGCTCCTTGACTTTTTCCCCGGATTCGCAGC
TCCTTGTCACTGCTTCAGATGATGGCTACATCAAGATCTATGACGTACAACATGCCAACT
TGGCTGGCACACTGAGTGGCCATGCATCCTGGGTGTTGAATGTTGCATTTTGTCCAGATG
ACACACACTTTGTTTCCAGTTCATCTGACAAAAGTGTAAAAGTTTGGGATGTTGGAACGA
GGACATGTGTTCACACCTTCTTTGATCACCAGGATCAGGTCTGGGGAGTAAAATACAATG
GAAATGGCTCAAAAATTGTGTCTGTTGGAGATGACCAGGAAATTCACATCTATGATTGTC
CAATTTAAACGTCAAAGTCCTCCAGGCTAAAGCTGCAAAGAGAATGTATAGCTTGATCAT
GACATTCCTTACCTTTCTAACTGGTTTAAAAGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCCGCGCGCCGAGGTCGCGCGGAGCCGGTCCTCGGAAGAGCTGAGGGGCTGTGCAGC
CGGGCAGTGAGAGCTGTCTGGCCTTAAGCCCTTCATCCTTGGGGAAGGAAATGACTAACC
AGTACAGTATTCTCTTCAAACAAGAGCAAGCCCATGATGATGCCATTTGGTCAGTTGCCT
GGGGGACAAACAAGAAAGAAAACTCAGAGACAGTGGTCACAGGATCCCTGGATGACCTGG
TGAAGGTCTGGAAATGGCGTGATGAGAAGCTGGATCTACAGTGGAGCCTGGAGGGCCATC
AGCTGGGTGTGGTGTCTGTGGACATAAGCCACACCCTGCCCATTGCTGCATCCAGTTCTC
TTGATGCTCATATTCGTCTCTGGGACTTGGAAAACGGCAAACAGATAAAGTCTATAGATG
CAGGACCTGTGGATGCCTGGACTTTGGCCTTTTCTCCTGATTCCCAGTATCTGGCCACAG
GAACTCATGTGGGGAAAGTGAACATTTTTGGTGTTGAAAGTGGGAAAAAGGAATATTCTT
TGGACACAAGAGGAAAATTCATTCTTAGTATTGCATATAGTCCTGATGGGAAGTATCTGG
CCAGTGGCGCTATAGACGGAATCATCAATATTTTTGATATTGCAACTGGAAAACTTCTTC
ATACGCTGGAAGGCCATGCTATGCCCATTCGCTCCTTGACTTTTTCCCCGGATTCGCAGC
TCCTTGTCACTGCTTCAGATGATGGCTACATCAAGATCTATGACGTACAACATGCCAACT
TGGCTGGCACACTGAGTGGCCATGCATCCTGGGTGTTGAATGTTGCATTTTGTCCAGATG
ACACACACTTTGTTTCCAGTTCATCTGACAAAAGTGTAAAAGTTTGGGATGTTGGAACGA
GGACATGTGTTCACACCTTCTTTGATCACCAGGATCAGGTCTGGGGAGTAAAATACAATG
GAAATGGCTCAAAAATTGTGTCTGTTGGAGATGACCAGGAAATTCACATCTATGATTGTC
CAATTTAAACGTCAAAGTCCTCCAGGCTAAAGCTGCAAAGAGAATGTATAGCTTGATCAT
GACATTCCTTACCTTTCTAACTGGTTTAAAAGAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9GZS3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GZS3_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1114, gnl|bosTau2|chr18 (44163266-44162169)
               

               
               17-1114, gnl|Hg17|chr15 (76372669-76362743)
               

               
               17-1114, gnl|Mm7|chr9 (54757617-54746589)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1114, gnl|bosTau2|chr18 (44163266-44162169)
               

               
               17-1114, gnl|Hg17|chr15 (76372669-76362743)
               

               
               17-1114, gnl|Mm7|chr9 (54757617-54746589)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	17-1114, gnl\|bosTau2\|chr18 (44163266-44162169)
	17-1114, gnl\|Hg17\|chr15 (76372669-76362743)
	17-1114, gnl\|Mm7\|chr9 (54757617-54746589)

	elu (0.385356)
	nlu (0.383362)
	ill (0.351185)
	lnt (0.284616)
	gul (0.177588)
	fbs (0.175346)
	duo (0.172801)
	nje (0.16592)
	cli (0.152812)
	cag (0.151194)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)